Wall clock time and date at job start Tue Mar 31 2020 21:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50696 * 109.47078 * 169.99718 * 6 5 4 8 8 C 1.39874 * 125.89811 * 94.70958 * 7 6 5 9 9 C 1.35312 * 107.91961 * 179.86635 * 8 7 6 10 10 N 1.34952 * 107.74501 * 0.39187 * 9 8 7 11 11 C 1.46506 * 126.03742 * 179.75234 * 10 9 8 12 12 N 1.30832 * 125.90078 * 275.02090 * 7 6 5 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00336 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99494 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47141 * 90.00156 * 25 23 21 27 27 H 1.48505 * 109.47177 * 209.99950 * 25 23 21 28 28 H 1.48496 * 109.47259 * 329.99923 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.09000 * 110.66988 * 85.78939 * 4 2 1 34 34 H 1.09010 * 109.46602 * 289.99451 * 6 5 4 35 35 H 1.08994 * 109.47243 * 49.99198 * 6 5 4 36 36 H 1.08003 * 126.04071 * 359.97438 * 8 7 6 37 37 H 1.07996 * 126.13022 * 180.14904 * 9 8 7 38 38 H 1.09003 * 109.46742 * 269.97652 * 11 10 9 39 39 H 1.09002 * 109.46933 * 29.97436 * 11 10 9 40 40 H 1.08994 * 109.47069 * 149.97979 * 11 10 9 41 41 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 42 42 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 43 43 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 44 44 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 45 45 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 46 46 H 0.97003 * 119.99714 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.3768 -2.5858 -1.2384 8 6 5.8786 -3.4868 -0.2935 9 6 7.2291 -3.4057 -0.3170 10 7 7.5696 -2.4797 -1.2378 11 6 8.9327 -2.0703 -1.5852 12 7 6.3895 -1.9792 -1.8026 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.9586 1.8381 9.4599 25 14 3.1145 -0.8005 9.3793 26 1 4.3240 -1.6619 9.3978 27 1 2.6067 -0.6305 10.7644 28 1 2.0661 -1.4373 8.5424 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1443 -0.1556 -2.0927 34 1 3.3463 -3.2401 -1.2932 35 1 3.8059 -2.1350 -2.6107 36 1 5.2919 -4.1342 0.3414 37 1 7.9120 -3.9766 0.2945 38 1 9.2350 -1.2377 -0.9499 39 1 9.6133 -2.9082 -1.4345 40 1 8.9638 -1.7602 -2.6297 41 1 4.1886 -1.2872 1.2113 42 1 3.1160 -2.6429 0.7605 43 1 2.7560 1.0338 2.0522 44 1 3.9823 0.9803 4.4493 45 1 2.2975 1.5122 4.6663 46 1 4.0330 1.6837 10.4147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:16 Heat of formation + Delta-G solvation = 50.214492 kcal Electronic energy + Delta-G solvation = -26485.353307 eV Core-core repulsion = 22731.092518 eV Total energy + Delta-G solvation = -3754.260789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35791 -40.04901 -38.41251 -35.04121 -33.53248 -32.54506 -32.42265 -30.38583 -29.98767 -28.70606 -27.59375 -25.98924 -25.59941 -24.35910 -21.79533 -21.29380 -20.81337 -20.10457 -19.58742 -17.81137 -17.15926 -16.81840 -16.40690 -15.96601 -15.46191 -15.20303 -14.94935 -14.84831 -14.67210 -14.17326 -13.95284 -13.82530 -13.44491 -13.29011 -13.06520 -12.96061 -12.82842 -12.78374 -12.66155 -12.36150 -12.18954 -12.07723 -11.62335 -11.37953 -11.24998 -11.17679 -10.99973 -10.92514 -10.72046 -10.56232 -9.84391 -9.49214 -9.46489 -9.00100 -8.92276 -8.77373 -8.61492 -8.48183 -6.89814 -6.27666 -3.98989 1.70548 2.30926 2.55122 2.79246 2.99667 3.32252 3.35723 3.51336 3.68347 3.87372 4.16659 4.30990 4.34304 4.46256 4.59480 4.71868 4.74697 4.79409 4.85058 4.97029 5.07869 5.09918 5.11409 5.15820 5.23413 5.30021 5.31540 5.39910 5.45771 5.51108 5.61947 5.63829 5.75413 5.79909 5.86923 5.88433 5.96414 6.00592 6.05840 6.42925 6.61698 6.67535 6.74672 6.81261 7.56734 7.67139 7.95536 8.43317 8.53326 9.18607 10.81661 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.002728 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.055657 B =10262.586213 C =12092.004062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.041 3.959 5 N -0.509 5.509 6 C 0.128 3.872 7 C 0.082 3.918 8 C -0.265 4.265 9 C 0.053 3.947 10 N -0.379 5.379 11 C 0.103 3.897 12 N -0.279 5.279 13 C 0.029 3.971 14 C 0.142 3.858 15 H 0.097 0.903 16 N -0.726 5.726 17 C 0.532 3.468 18 O -0.520 6.520 19 C -0.124 4.124 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.173 0.827 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.400 0.600 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -7.776 -26.869 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 H 0.108 0.892 4 C -0.087 4.087 5 N -0.234 5.234 6 C -0.002 4.002 7 C -0.085 4.085 8 C -0.295 4.295 9 C -0.093 4.093 10 N -0.161 5.161 11 C -0.039 4.039 12 N -0.102 5.102 13 C -0.100 4.100 14 C 0.035 3.965 15 H 0.115 0.885 16 N -0.379 5.379 17 C 0.318 3.682 18 O -0.395 6.395 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.518 5.518 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.163 0.837 37 H 0.190 0.810 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.235 0.765 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.553 -8.299 -27.185 28.538 hybrid contribution -0.046 -0.067 0.975 0.979 sum 2.507 -8.366 -26.210 27.626 Atomic orbital electron populations 1.21776 0.93739 1.02218 1.02371 1.22352 0.96081 1.00111 0.93443 0.89181 1.23290 0.88641 0.98713 0.98010 1.64723 1.23150 1.33018 1.02491 1.20500 0.87877 0.92863 0.98956 1.21993 0.94942 0.95374 0.96172 1.21429 0.93636 1.07836 1.06563 1.22524 0.97031 0.94778 0.94941 1.48526 1.06275 1.30910 1.30440 1.21840 0.77481 1.01545 1.03032 1.77304 0.89878 1.21101 1.21933 1.23386 0.99324 0.98613 0.88689 1.21834 0.95725 0.91904 0.87006 0.88493 1.46028 1.70069 1.15803 1.06041 1.20292 0.76678 0.88404 0.82848 1.90690 1.46777 1.19594 1.82440 1.23282 1.04814 1.01648 0.97728 1.84756 1.88539 1.21286 0.96960 1.22327 1.51369 0.99092 0.94031 0.89412 1.24717 0.93464 0.97280 0.95884 1.69942 1.44838 1.32253 1.04758 0.86732 0.81039 0.84244 0.79816 1.19232 1.19975 1.15896 0.91919 0.92156 0.92387 0.93111 0.89523 0.92317 0.89333 0.83693 0.80972 0.90687 0.89570 0.89412 0.89677 0.92810 0.76490 0.88548 0.88495 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.16 37.16 0.34 -0.76 16 2 C -0.10 -0.87 3.37 -88.76 -0.30 -1.17 16 3 H 0.09 0.77 7.76 -51.93 -0.40 0.36 16 4 C 0.04 0.34 5.96 -1.89 -0.01 0.33 16 5 N -0.51 -5.32 5.23 -231.89 -1.21 -6.53 16 6 C 0.13 1.25 5.35 -4.98 -0.03 1.22 16 7 C 0.08 0.97 6.33 -82.41 -0.52 0.45 16 8 C -0.26 -2.91 10.67 -40.01 -0.43 -3.34 16 9 C 0.05 0.51 11.49 -17.22 -0.20 0.31 16 10 N -0.38 -3.94 4.01 -68.16 -0.27 -4.21 16 11 C 0.10 0.62 11.47 59.85 0.69 1.30 16 12 N -0.28 -3.59 12.57 33.67 0.42 -3.16 16 13 C 0.03 0.34 6.00 -2.76 -0.02 0.33 16 14 C 0.14 1.64 2.92 -66.57 -0.19 1.45 16 15 H 0.10 1.28 7.26 -51.93 -0.38 0.90 16 16 N -0.73 -9.51 5.01 -52.49 -0.26 -9.78 16 17 C 0.53 9.46 7.85 -10.98 -0.09 9.37 16 18 O -0.52 -11.11 15.51 5.55 0.09 -11.02 16 19 C -0.12 -2.43 6.16 36.01 0.22 -2.20 16 20 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 21 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 22 H 0.09 2.66 8.03 -52.48 -0.42 2.23 16 23 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 24 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 25 Si 0.86 21.88 27.74 -169.99 -4.72 17.17 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.05 0.37 7.90 -51.92 -0.41 -0.04 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.50 7.74 -51.92 -0.40 0.10 16 35 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.15 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 42 H 0.05 0.64 7.52 -51.93 -0.39 0.25 16 43 H 0.40 4.33 8.38 -40.82 -0.34 3.98 16 44 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 45 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 394.07 15.07 5.94 5.94 Total: -1.00 -36.50 394.07 -8.93 -45.44 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -7.38 Total: 2.55 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.32 Total: -4.79 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.55 Total: -49.67 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.17 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.50 -8.93 -45.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.652 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds