Wall clock time and date at job start Tue Mar 31 2020 21:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50696 * 109.47078 * 169.99718 * 6 5 4 8 8 C 1.39874 * 125.89811 * 94.70958 * 7 6 5 9 9 C 1.35312 * 107.91961 * 179.86635 * 8 7 6 10 10 N 1.34952 * 107.74501 * 0.39187 * 9 8 7 11 11 C 1.46506 * 126.03742 * 179.75234 * 10 9 8 12 12 N 1.30832 * 125.90078 * 275.02090 * 7 6 5 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00336 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 119.99494 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47141 * 90.00156 * 25 23 21 27 27 H 1.48505 * 109.47177 * 209.99950 * 25 23 21 28 28 H 1.48496 * 109.47259 * 329.99923 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.09000 * 110.66988 * 85.78939 * 4 2 1 34 34 H 1.09010 * 109.46602 * 289.99451 * 6 5 4 35 35 H 1.08994 * 109.47243 * 49.99198 * 6 5 4 36 36 H 1.08003 * 126.04071 * 359.97438 * 8 7 6 37 37 H 1.07996 * 126.13022 * 180.14904 * 9 8 7 38 38 H 1.09003 * 109.46742 * 269.97652 * 11 10 9 39 39 H 1.09002 * 109.46933 * 29.97436 * 11 10 9 40 40 H 1.08994 * 109.47069 * 149.97979 * 11 10 9 41 41 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 42 42 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 43 43 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 44 44 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 45 45 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 46 46 H 0.97003 * 119.99714 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.3768 -2.5858 -1.2384 8 6 5.8786 -3.4868 -0.2935 9 6 7.2291 -3.4057 -0.3170 10 7 7.5696 -2.4797 -1.2378 11 6 8.9327 -2.0703 -1.5852 12 7 6.3895 -1.9792 -1.8026 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.9586 1.8381 9.4599 25 14 3.1145 -0.8005 9.3793 26 1 4.3240 -1.6619 9.3978 27 1 2.6067 -0.6305 10.7644 28 1 2.0661 -1.4373 8.5424 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1443 -0.1556 -2.0927 34 1 3.3463 -3.2401 -1.2932 35 1 3.8059 -2.1350 -2.6107 36 1 5.2919 -4.1342 0.3414 37 1 7.9120 -3.9766 0.2945 38 1 9.2350 -1.2377 -0.9499 39 1 9.6133 -2.9082 -1.4345 40 1 8.9638 -1.7602 -2.6297 41 1 4.1886 -1.2872 1.2113 42 1 3.1160 -2.6429 0.7605 43 1 2.7560 1.0338 2.0522 44 1 3.9823 0.9803 4.4493 45 1 2.2975 1.5122 4.6663 46 1 4.0330 1.6837 10.4147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:15 Heat of formation + Delta-G solvation = 23.229371 kcal Electronic energy + Delta-G solvation = -26486.523469 eV Core-core repulsion = 22731.092518 eV Total energy + Delta-G solvation = -3755.430951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.12187 -41.14594 -39.57360 -35.98913 -34.68182 -34.49368 -33.31689 -31.40033 -31.06051 -29.60849 -28.53702 -27.83778 -26.62920 -25.18818 -22.74754 -22.05996 -21.69052 -21.31027 -20.40196 -19.80790 -17.97488 -17.85268 -17.73485 -17.10115 -16.86725 -16.43933 -16.21106 -15.97927 -15.70793 -15.42457 -14.97811 -14.88652 -14.68990 -14.52869 -14.18396 -13.98488 -13.66375 -13.57047 -13.42332 -13.34749 -13.30944 -13.03034 -13.00070 -12.97222 -12.62579 -12.45698 -12.25189 -11.90137 -11.83960 -11.67541 -11.51242 -11.17369 -10.97093 -10.54278 -10.28322 -10.11005 -9.54946 -9.39996 -8.99605 -8.51864 -6.22582 0.94183 0.98603 1.31341 1.46721 1.54912 1.56508 1.67849 1.75679 2.21978 2.26466 2.71439 2.86346 3.08404 3.43031 3.57771 3.68166 3.86814 3.92175 4.03455 4.15251 4.22445 4.23968 4.30192 4.37351 4.42321 4.46079 4.53653 4.56556 4.66388 4.67761 4.76586 4.82215 4.87369 4.88002 4.91081 5.06951 5.11644 5.20968 5.35269 5.53506 5.65829 5.70414 5.83103 5.98763 6.11078 6.15456 6.46686 6.77757 6.93202 7.18901 8.60743 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.002728 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.055657 B =10262.586213 C =12092.004062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.097 0.903 4 C 0.045 3.955 5 N -0.518 5.518 6 C 0.129 3.871 7 C 0.071 3.929 8 C -0.291 4.291 9 C 0.056 3.944 10 N -0.384 5.384 11 C 0.094 3.906 12 N -0.317 5.317 13 C 0.039 3.961 14 C 0.139 3.861 15 H 0.083 0.917 16 N -0.703 5.703 17 C 0.538 3.462 18 O -0.559 6.559 19 C -0.112 4.112 20 S -0.171 6.171 21 C -0.530 4.530 22 H 0.061 0.939 23 C 0.045 3.955 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.259 1.259 28 H -0.236 1.236 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.206 0.794 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.415 0.585 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.917 -8.446 -28.600 29.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.115 0.885 4 C -0.083 4.083 5 N -0.243 5.243 6 C -0.001 4.001 7 C -0.096 4.096 8 C -0.321 4.321 9 C -0.090 4.090 10 N -0.167 5.167 11 C -0.046 4.046 12 N -0.141 5.141 13 C -0.090 4.090 14 C 0.033 3.967 15 H 0.101 0.899 16 N -0.356 5.356 17 C 0.323 3.677 18 O -0.437 6.437 19 C -0.263 4.263 20 S 0.056 5.944 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.161 4.161 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.187 1.187 27 H -0.183 1.183 28 H -0.160 1.160 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.166 0.834 37 H 0.222 0.778 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.252 0.748 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.350 -8.924 -28.970 30.404 hybrid contribution 0.100 0.216 1.359 1.379 sum 2.450 -8.708 -27.611 29.055 Atomic orbital electron populations 1.21756 0.92686 1.02627 1.02682 1.22335 0.96792 0.99960 0.91870 0.88528 1.23375 0.87474 0.99364 0.98050 1.64689 1.24662 1.33378 1.01563 1.20568 0.87117 0.93104 0.99308 1.22335 0.95675 0.95361 0.96198 1.21661 0.94606 1.08596 1.07243 1.23068 0.97275 0.94233 0.94461 1.48886 1.06951 1.30647 1.30182 1.22158 0.76078 1.03037 1.03319 1.77212 0.90970 1.22527 1.23425 1.23151 0.97871 0.98293 0.89710 1.21982 0.95437 0.91963 0.87285 0.89851 1.45836 1.68315 1.16702 1.04778 1.19935 0.76553 0.87380 0.83822 1.90680 1.48955 1.20935 1.83160 1.23272 1.06225 1.01892 0.94912 1.84652 1.88397 1.21292 1.00104 1.22470 1.51167 0.99064 0.95020 0.92120 1.25583 0.93370 1.00770 0.96331 1.70020 1.45933 1.34232 1.05431 0.85855 0.80924 0.79896 0.79625 1.18659 1.18299 1.15951 0.93023 0.90202 0.92193 0.91755 0.87929 0.91248 0.88318 0.83446 0.77775 0.90331 0.86540 0.89099 0.92497 0.93249 0.74830 0.87330 0.86836 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.16 71.98 0.66 -1.14 16 2 C -0.09 -1.35 3.37 -9.59 -0.03 -1.38 16 3 H 0.10 1.36 7.76 -2.39 -0.02 1.35 16 4 C 0.04 0.61 5.96 86.65 0.52 1.13 16 5 N -0.52 -10.11 5.23 -887.56 -4.65 -14.76 16 6 C 0.13 2.37 5.35 85.56 0.46 2.83 16 7 C 0.07 1.64 6.33 43.10 0.27 1.92 16 8 C -0.29 -6.31 10.67 21.99 0.23 -6.08 16 9 C 0.06 1.02 11.49 83.54 0.96 1.98 16 10 N -0.38 -7.61 4.01 -369.55 -1.48 -9.09 16 11 C 0.09 0.99 11.47 127.77 1.47 2.46 16 12 N -0.32 -8.04 12.57 -47.39 -0.60 -8.63 16 13 C 0.04 0.91 6.00 86.45 0.52 1.43 16 14 C 0.14 3.07 2.92 45.87 0.13 3.20 16 15 H 0.08 2.14 7.26 -2.38 -0.02 2.12 16 16 N -0.70 -17.58 5.01 -438.36 -2.20 -19.77 16 17 C 0.54 18.75 7.85 87.66 0.69 19.44 16 18 O -0.56 -23.82 15.51 -3.04 -0.05 -23.86 16 19 C -0.11 -4.31 6.16 71.24 0.44 -3.87 16 20 S -0.17 -8.71 18.55 -56.49 -1.05 -9.76 16 21 C -0.53 -31.14 10.04 67.95 0.68 -30.45 16 22 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 23 C 0.04 2.65 5.50 84.86 0.47 3.11 16 24 N -0.92 -56.34 13.97 21.65 0.30 -56.04 16 25 Si 0.92 45.19 27.74 68.60 1.90 47.09 16 26 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 32 H 0.06 0.74 7.90 -2.38 -0.02 0.72 16 33 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.10 7.74 -2.38 -0.02 1.09 16 35 H 0.10 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.21 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 1.65 7.92 -2.39 -0.02 1.63 16 42 H 0.05 1.18 7.52 -2.39 -0.02 1.16 16 43 H 0.41 8.16 8.38 -92.71 -0.78 7.38 16 44 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 45 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 46 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -80.09 394.07 -0.19 -80.28 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.16 Total: 19.97 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 7.46 Total: -5.43 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -8.62 Total: -108.29 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.05 Total: -9.76 kcal Total: -80.09 -0.19 -80.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.509 kcal (2) G-P(sol) polarization free energy of solvation -80.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds