Wall clock time and date at job start Tue Mar 31 2020 21:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.27176 * 2 1 4 4 C 1.53995 * 110.30460 * 237.91959 * 2 1 3 5 5 N 1.47903 * 107.05849 * 242.30643 * 4 2 1 6 6 C 1.46897 * 111.00178 * 214.15885 * 5 4 2 7 7 C 1.50704 * 109.47133 * 169.99747 * 6 5 4 8 8 C 1.39866 * 126.03937 * 269.99531 * 7 6 5 9 9 N 1.30841 * 108.19911 * 179.74249 * 8 7 6 10 10 N 1.40085 * 108.20773 * 0.40256 * 9 8 7 11 11 C 1.46499 * 126.03816 * 179.85105 * 10 9 8 12 12 C 1.34944 * 107.92454 * 359.59610 * 10 9 8 13 13 C 1.48533 * 105.81742 * 334.67182 * 5 4 2 14 14 C 1.54587 * 110.31271 * 122.20423 * 2 1 3 15 15 H 1.09002 * 110.72908 * 22.33154 * 14 2 1 16 16 N 1.46506 * 110.72248 * 259.23103 * 14 2 1 17 17 C 1.34778 * 119.99927 * 154.99830 * 16 14 2 18 18 O 1.21276 * 120.00148 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99503 * 179.97438 * 17 16 14 20 20 S 1.81003 * 109.46780 * 179.97438 * 19 17 16 21 21 C 1.76206 * 100.00015 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99939 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99696 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00127 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47521 * 89.99467 * 25 23 21 27 27 H 1.48503 * 109.47261 * 209.99586 * 25 23 21 28 28 H 1.48503 * 109.47280 * 329.99327 * 25 23 21 29 29 H 1.09001 * 109.47260 * 180.63294 * 1 2 3 30 30 H 1.08998 * 109.46731 * 300.62411 * 1 2 3 31 31 H 1.09000 * 109.47414 * 60.63005 * 1 2 3 32 32 H 1.09001 * 109.91809 * 122.95388 * 4 2 1 33 33 H 1.08998 * 110.08651 * 1.74824 * 4 2 1 34 34 H 1.09004 * 109.47432 * 49.99659 * 6 5 4 35 35 H 1.08999 * 109.46793 * 289.99392 * 6 5 4 36 36 H 1.08002 * 125.89933 * 0.02562 * 8 7 6 37 37 H 1.09002 * 109.47391 * 269.69466 * 11 10 9 38 38 H 1.09001 * 109.46813 * 149.69523 * 11 10 9 39 39 H 1.09004 * 109.47041 * 29.69650 * 11 10 9 40 40 H 1.08004 * 126.13243 * 180.21912 * 12 10 9 41 41 H 1.08999 * 110.67003 * 157.64298 * 13 5 4 42 42 H 1.09009 * 110.66636 * 280.76756 * 13 5 4 43 43 H 0.96997 * 119.99342 * 334.99496 * 16 14 2 44 44 H 1.09002 * 109.47621 * 299.99978 * 19 17 16 45 45 H 1.08999 * 109.47282 * 60.00538 * 19 17 16 46 46 H 0.97004 * 119.99719 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0644 -0.7671 -1.2237 5 7 2.8313 -1.9229 -0.7103 6 6 3.9750 -2.2246 -1.5813 7 6 4.8664 -3.2360 -0.9077 8 6 5.9406 -2.9501 -0.0589 9 7 6.4655 -4.0832 0.3317 10 7 5.7466 -5.1272 -0.2645 11 6 6.0066 -6.5590 -0.0956 12 6 4.7689 -4.5812 -1.0174 13 6 3.2855 -1.5355 0.6497 14 6 2.0667 -0.7726 1.2267 15 1 1.3162 -1.4677 1.6034 16 7 2.4867 0.1547 2.2803 17 6 2.5033 -0.2490 3.5661 18 8 2.1710 -1.3800 3.8509 19 6 2.9360 0.7047 4.6496 20 16 2.8499 -0.1269 6.2550 21 6 3.3922 1.1794 7.3058 22 1 3.6539 2.1385 6.8839 23 6 3.4820 0.9761 8.6759 24 7 3.8866 1.9521 9.4609 25 14 3.0287 -0.6825 9.4057 26 1 4.2329 -1.5503 9.4487 27 1 2.5069 -0.4915 10.7828 28 1 1.9857 -1.3245 8.5659 29 1 -0.3634 -1.0276 0.0114 30 1 -0.3633 0.5235 0.8843 31 1 -0.3634 0.5040 -0.8956 32 1 2.7161 -0.1207 -1.8116 33 1 1.2347 -1.1156 -1.8386 34 1 4.5394 -1.3112 -1.7695 35 1 3.6147 -2.6303 -2.5266 36 1 6.2757 -1.9644 0.2285 37 1 6.7047 -6.8946 -0.8626 38 1 5.0715 -7.1115 -0.1887 39 1 6.4368 -6.7364 0.8901 40 1 4.0393 -5.1211 -1.6029 41 1 3.5047 -2.4195 1.2485 42 1 4.1565 -0.8824 0.5930 43 1 2.7529 1.0591 2.0523 44 1 3.9600 1.0278 4.4618 45 1 2.2763 1.5724 4.6546 46 1 3.9498 1.8099 10.4184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:23 Heat of formation + Delta-G solvation = 49.915637 kcal Electronic energy + Delta-G solvation = -26633.964219 eV Core-core repulsion = 22879.690471 eV Total energy + Delta-G solvation = -3754.273748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45353 -39.99645 -38.42552 -34.97469 -33.53817 -32.73938 -32.41965 -30.72033 -29.96445 -28.13877 -27.58202 -25.90564 -25.59597 -24.25910 -21.81559 -21.20616 -20.63613 -20.23925 -20.15500 -17.81805 -17.16843 -16.60357 -16.45474 -15.76408 -15.41173 -15.11104 -14.99737 -14.80232 -14.55073 -14.40597 -13.88738 -13.80038 -13.48308 -13.34486 -13.32367 -13.02866 -12.84455 -12.78025 -12.57197 -12.44908 -12.20789 -11.89370 -11.56526 -11.36049 -11.23563 -11.16702 -10.98978 -10.85280 -10.68573 -10.56099 -9.83856 -9.61237 -9.48859 -8.99579 -8.93150 -8.81423 -8.47529 -8.43788 -6.89371 -6.27284 -3.98590 1.69788 2.31925 2.53616 2.78304 2.99565 3.29905 3.35552 3.52448 3.64131 4.07042 4.23637 4.32853 4.35277 4.50616 4.59549 4.65298 4.77625 4.83294 4.86307 4.96817 5.03741 5.11369 5.11908 5.16420 5.21087 5.26828 5.32156 5.37174 5.41992 5.55686 5.62036 5.71735 5.76551 5.79404 5.90421 5.93869 6.01999 6.03269 6.08779 6.41275 6.49295 6.75728 6.79351 6.82851 7.50318 7.64229 7.95915 8.43328 8.53154 9.19122 10.82014 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.002831 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.984621 B = 9887.194855 C =11783.925967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.080 0.920 4 C 0.041 3.959 5 N -0.511 5.511 6 C 0.128 3.872 7 C -0.239 4.239 8 C 0.057 3.943 9 N -0.294 5.294 10 N -0.378 5.378 11 C 0.102 3.898 12 C 0.075 3.925 13 C 0.034 3.966 14 C 0.147 3.853 15 H 0.104 0.896 16 N -0.729 5.729 17 C 0.532 3.468 18 O -0.516 6.516 19 C -0.124 4.124 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.881 5.881 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.178 0.822 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.173 0.827 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.398 0.602 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 -9.348 -28.505 30.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.098 0.902 4 C -0.087 4.087 5 N -0.236 5.236 6 C 0.000 4.000 7 C -0.251 4.251 8 C -0.130 4.130 9 N -0.115 5.115 10 N -0.160 5.160 11 C -0.040 4.040 12 C -0.072 4.072 13 C -0.095 4.095 14 C 0.041 3.959 15 H 0.122 0.878 16 N -0.383 5.383 17 C 0.318 3.682 18 O -0.390 6.390 19 C -0.275 4.275 20 S 0.085 5.915 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.518 5.518 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.195 0.805 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.190 0.810 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.232 0.768 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.930 -12.385 -27.103 29.813 hybrid contribution 0.413 2.317 -0.391 2.386 sum -0.517 -10.068 -27.494 29.284 Atomic orbital electron populations 1.21816 0.93671 1.02504 1.01874 1.22258 0.97193 0.99250 0.94141 0.90195 1.22959 0.98258 0.91143 0.96374 1.64863 1.20875 1.35534 1.02290 1.20459 0.89102 0.95481 0.94983 1.19863 1.02564 0.93509 1.09194 1.23791 0.95195 0.97382 0.96631 1.77419 1.19585 0.94430 1.20046 1.48485 1.24417 1.06633 1.36460 1.21857 1.02935 0.75053 1.04119 1.22293 0.93618 0.94148 0.97175 1.23539 0.96301 0.99681 0.89953 1.21886 0.96332 0.91317 0.86412 0.87822 1.45971 1.70262 1.15898 1.06179 1.20289 0.76754 0.88434 0.82749 1.90705 1.46174 1.20049 1.82080 1.23280 1.04802 1.01518 0.97863 1.84805 1.88480 1.21666 0.96563 1.22322 1.51380 0.99224 0.93897 0.89405 1.24711 0.93468 0.97198 0.95946 1.69940 1.44950 1.31993 1.04891 0.86736 0.81069 0.84179 0.79886 1.19211 1.19954 1.15907 0.91948 0.92265 0.92464 0.93557 0.89898 0.93926 0.90142 0.80502 0.90840 0.89453 0.89182 0.80956 0.89597 0.93446 0.76752 0.88553 0.88499 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.89 37.16 0.33 -0.81 16 2 C -0.11 -0.92 3.32 -89.27 -0.30 -1.21 16 3 H 0.08 0.59 7.75 -51.93 -0.40 0.19 16 4 C 0.04 0.31 6.35 -2.75 -0.02 0.30 16 5 N -0.51 -4.87 5.39 -231.89 -1.25 -6.12 16 6 C 0.13 1.06 5.52 -4.98 -0.03 1.03 16 7 C -0.24 -2.38 4.66 -105.05 -0.49 -2.87 16 8 C 0.06 0.66 10.90 -17.36 -0.19 0.47 16 9 N -0.29 -3.86 12.58 30.62 0.39 -3.47 16 10 N -0.38 -3.90 4.01 -68.16 -0.27 -4.17 16 11 C 0.10 0.63 11.47 59.85 0.69 1.32 16 12 C 0.07 0.68 11.40 -17.22 -0.20 0.49 16 13 C 0.03 0.40 4.74 -1.90 -0.01 0.39 16 14 C 0.15 1.72 2.97 -66.07 -0.20 1.53 16 15 H 0.10 1.50 7.26 -51.93 -0.38 1.12 16 16 N -0.73 -9.30 5.18 -52.01 -0.27 -9.57 16 17 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 18 O -0.52 -11.29 15.51 5.56 0.09 -11.20 16 19 C -0.12 -2.41 6.16 36.00 0.22 -2.19 16 20 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 21 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 22 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 23 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 24 N -0.88 -26.82 13.97 55.49 0.78 -26.05 16 25 Si 0.86 22.06 27.74 -169.99 -4.71 17.35 16 26 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 28 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.08 0.58 7.69 -51.93 -0.40 0.18 16 34 H 0.04 0.33 7.81 -51.93 -0.41 -0.08 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.17 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.09 1.28 7.77 -51.93 -0.40 0.87 16 42 H 0.05 0.53 7.83 -51.92 -0.41 0.12 16 43 H 0.40 3.91 8.39 -40.82 -0.34 3.57 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 45 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -36.61 391.45 -8.77 -45.38 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.36 Total: 1.85 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.05 Total: -4.27 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.63 Total: -49.38 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.35 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.61 -8.77 -45.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.295 kcal (2) G-P(sol) polarization free energy of solvation -36.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds