Wall clock time and date at job start Tue Mar 31 2020 21:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.27176 * 2 1 4 4 C 1.53995 * 110.30460 * 237.91959 * 2 1 3 5 5 N 1.47903 * 107.05849 * 242.30643 * 4 2 1 6 6 C 1.46897 * 111.00178 * 214.15885 * 5 4 2 7 7 C 1.50704 * 109.47133 * 169.99747 * 6 5 4 8 8 C 1.39866 * 126.03937 * 269.99531 * 7 6 5 9 9 N 1.30841 * 108.19911 * 179.74249 * 8 7 6 10 10 N 1.40085 * 108.20773 * 0.40256 * 9 8 7 11 11 C 1.46499 * 126.03816 * 179.85105 * 10 9 8 12 12 C 1.34944 * 107.92454 * 359.59610 * 10 9 8 13 13 C 1.48533 * 105.81742 * 334.67182 * 5 4 2 14 14 C 1.54587 * 110.31271 * 122.20423 * 2 1 3 15 15 H 1.09002 * 110.72908 * 22.33154 * 14 2 1 16 16 N 1.46506 * 110.72248 * 259.23103 * 14 2 1 17 17 C 1.34778 * 119.99927 * 154.99830 * 16 14 2 18 18 O 1.21276 * 120.00148 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99503 * 179.97438 * 17 16 14 20 20 S 1.81003 * 109.46780 * 179.97438 * 19 17 16 21 21 C 1.76206 * 100.00015 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99939 * 179.97438 * 21 20 19 24 24 N 1.31627 * 119.99696 * 180.02562 * 23 21 20 25 25 Si 1.86792 * 120.00127 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47521 * 89.99467 * 25 23 21 27 27 H 1.48503 * 109.47261 * 209.99586 * 25 23 21 28 28 H 1.48503 * 109.47280 * 329.99327 * 25 23 21 29 29 H 1.09001 * 109.47260 * 180.63294 * 1 2 3 30 30 H 1.08998 * 109.46731 * 300.62411 * 1 2 3 31 31 H 1.09000 * 109.47414 * 60.63005 * 1 2 3 32 32 H 1.09001 * 109.91809 * 122.95388 * 4 2 1 33 33 H 1.08998 * 110.08651 * 1.74824 * 4 2 1 34 34 H 1.09004 * 109.47432 * 49.99659 * 6 5 4 35 35 H 1.08999 * 109.46793 * 289.99392 * 6 5 4 36 36 H 1.08002 * 125.89933 * 0.02562 * 8 7 6 37 37 H 1.09002 * 109.47391 * 269.69466 * 11 10 9 38 38 H 1.09001 * 109.46813 * 149.69523 * 11 10 9 39 39 H 1.09004 * 109.47041 * 29.69650 * 11 10 9 40 40 H 1.08004 * 126.13243 * 180.21912 * 12 10 9 41 41 H 1.08999 * 110.67003 * 157.64298 * 13 5 4 42 42 H 1.09009 * 110.66636 * 280.76756 * 13 5 4 43 43 H 0.96997 * 119.99342 * 334.99496 * 16 14 2 44 44 H 1.09002 * 109.47621 * 299.99978 * 19 17 16 45 45 H 1.08999 * 109.47282 * 60.00538 * 19 17 16 46 46 H 0.97004 * 119.99719 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0644 -0.7671 -1.2237 5 7 2.8313 -1.9229 -0.7103 6 6 3.9750 -2.2246 -1.5813 7 6 4.8664 -3.2360 -0.9077 8 6 5.9406 -2.9501 -0.0589 9 7 6.4655 -4.0832 0.3317 10 7 5.7466 -5.1272 -0.2645 11 6 6.0066 -6.5590 -0.0956 12 6 4.7689 -4.5812 -1.0174 13 6 3.2855 -1.5355 0.6497 14 6 2.0667 -0.7726 1.2267 15 1 1.3162 -1.4677 1.6034 16 7 2.4867 0.1547 2.2803 17 6 2.5033 -0.2490 3.5661 18 8 2.1710 -1.3800 3.8509 19 6 2.9360 0.7047 4.6496 20 16 2.8499 -0.1269 6.2550 21 6 3.3922 1.1794 7.3058 22 1 3.6539 2.1385 6.8839 23 6 3.4820 0.9761 8.6759 24 7 3.8866 1.9521 9.4609 25 14 3.0287 -0.6825 9.4057 26 1 4.2329 -1.5503 9.4487 27 1 2.5069 -0.4915 10.7828 28 1 1.9857 -1.3245 8.5659 29 1 -0.3634 -1.0276 0.0114 30 1 -0.3633 0.5235 0.8843 31 1 -0.3634 0.5040 -0.8956 32 1 2.7161 -0.1207 -1.8116 33 1 1.2347 -1.1156 -1.8386 34 1 4.5394 -1.3112 -1.7695 35 1 3.6147 -2.6303 -2.5266 36 1 6.2757 -1.9644 0.2285 37 1 6.7047 -6.8946 -0.8626 38 1 5.0715 -7.1115 -0.1887 39 1 6.4368 -6.7364 0.8901 40 1 4.0393 -5.1211 -1.6029 41 1 3.5047 -2.4195 1.2485 42 1 4.1565 -0.8824 0.5930 43 1 2.7529 1.0591 2.0523 44 1 3.9600 1.0278 4.4618 45 1 2.2763 1.5724 4.6546 46 1 3.9498 1.8099 10.4184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:22 Heat of formation + Delta-G solvation = 22.214774 kcal Electronic energy + Delta-G solvation = -26635.165419 eV Core-core repulsion = 22879.690471 eV Total energy + Delta-G solvation = -3755.474948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.19457 -41.09097 -39.55691 -35.92254 -34.68669 -34.43739 -33.54028 -31.50667 -31.26982 -29.12310 -28.31019 -27.84421 -26.55284 -25.08186 -22.67382 -22.07196 -21.65375 -21.20460 -20.94826 -19.82811 -18.04953 -17.79117 -17.53322 -17.10583 -16.62716 -16.42648 -16.19574 -15.99315 -15.48300 -15.28074 -15.20858 -14.89917 -14.68253 -14.58252 -14.15996 -13.99051 -13.90679 -13.59844 -13.43972 -13.36117 -13.23325 -13.17368 -13.03674 -12.67453 -12.64015 -12.37807 -12.16093 -11.87825 -11.85598 -11.60471 -11.44799 -11.18486 -11.00144 -10.54230 -10.39202 -10.10504 -9.53606 -9.15350 -9.00704 -8.52816 -6.23284 0.96925 0.97845 1.29892 1.45329 1.53899 1.55254 1.69599 1.77145 2.18797 2.24617 2.70491 2.85504 3.30035 3.49307 3.65454 3.70664 3.91078 3.95585 4.01929 4.22507 4.22659 4.26214 4.32053 4.39788 4.41967 4.45524 4.52216 4.59221 4.66773 4.71388 4.80884 4.85582 4.90234 4.97567 5.05273 5.14076 5.14383 5.23380 5.38058 5.48616 5.66065 5.69892 5.94658 6.10439 6.14363 6.17853 6.46787 6.72998 6.92661 7.20130 8.59671 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010792 B = 0.002831 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.984621 B = 9887.194855 C =11783.925967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.100 0.900 4 C 0.044 3.956 5 N -0.519 5.519 6 C 0.132 3.868 7 C -0.251 4.251 8 C 0.043 3.957 9 N -0.344 5.344 10 N -0.384 5.384 11 C 0.093 3.907 12 C 0.076 3.924 13 C 0.046 3.954 14 C 0.143 3.857 15 H 0.074 0.926 16 N -0.703 5.703 17 C 0.536 3.464 18 O -0.562 6.562 19 C -0.110 4.110 20 S -0.179 6.179 21 C -0.527 4.527 22 H 0.063 0.937 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.913 3.087 26 H -0.264 1.264 27 H -0.257 1.257 28 H -0.238 1.238 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.181 0.819 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.206 0.794 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.417 0.583 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.983 -9.549 -31.402 32.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.118 0.882 4 C -0.084 4.084 5 N -0.244 5.244 6 C 0.004 3.996 7 C -0.263 4.263 8 C -0.143 4.143 9 N -0.166 5.166 10 N -0.167 5.167 11 C -0.047 4.047 12 C -0.071 4.071 13 C -0.083 4.083 14 C 0.037 3.963 15 H 0.092 0.908 16 N -0.357 5.357 17 C 0.322 3.678 18 O -0.440 6.440 19 C -0.261 4.261 20 S 0.048 5.952 21 C -0.675 4.675 22 H 0.082 0.918 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.189 1.189 27 H -0.182 1.182 28 H -0.162 1.162 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.198 0.802 37 H 0.109 0.891 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.223 0.777 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.254 0.746 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.866 -12.546 -30.045 32.613 hybrid contribution 0.715 2.400 0.345 2.528 sum -1.151 -10.146 -29.700 31.407 Atomic orbital electron populations 1.21805 0.93329 1.02086 1.02445 1.22252 0.97374 0.99838 0.92351 0.88200 1.23026 0.98693 0.90668 0.96003 1.64838 1.21504 1.36592 1.01422 1.20531 0.88498 0.95491 0.95074 1.20136 1.02507 0.94445 1.09238 1.24018 0.95915 0.97357 0.97030 1.77321 1.21603 0.95697 1.22002 1.48822 1.24280 1.07427 1.36127 1.22157 1.04825 0.73449 1.04263 1.22882 0.93409 0.94297 0.96550 1.23249 0.96221 0.97889 0.90975 1.21963 0.96021 0.91339 0.86973 0.90760 1.45723 1.68372 1.16940 1.04644 1.19989 0.76546 0.87328 0.83946 1.90697 1.48638 1.21721 1.82942 1.23266 1.06485 1.01726 0.94616 1.84764 1.88395 1.21860 1.00196 1.22454 1.51029 0.99210 0.94769 0.91838 1.25543 0.93472 1.00460 0.96469 1.70013 1.46070 1.33848 1.05553 0.85886 0.80812 0.80082 0.79714 1.18875 1.18159 1.16161 0.92882 0.93442 0.90156 0.91541 0.88618 0.93069 0.88017 0.80169 0.89104 0.86845 0.90097 0.77719 0.93588 0.92922 0.74560 0.86918 0.86624 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.89 71.98 0.64 -1.26 16 2 C -0.10 -1.36 3.32 -9.92 -0.03 -1.40 16 3 H 0.10 1.04 7.75 -2.39 -0.02 1.02 16 4 C 0.04 0.51 6.35 86.45 0.55 1.06 16 5 N -0.52 -8.72 5.39 -887.55 -4.78 -13.51 16 6 C 0.13 1.83 5.52 85.56 0.47 2.30 16 7 C -0.25 -4.71 4.66 -20.14 -0.09 -4.81 16 8 C 0.04 0.99 10.90 85.23 0.93 1.92 16 9 N -0.34 -9.29 12.58 -57.02 -0.72 -10.00 16 10 N -0.38 -7.75 4.01 -369.55 -1.48 -9.23 16 11 C 0.09 1.07 11.47 127.77 1.47 2.53 16 12 C 0.08 1.28 11.40 83.54 0.95 2.23 16 13 C 0.05 1.03 4.74 86.65 0.41 1.44 16 14 C 0.14 3.19 2.97 46.19 0.14 3.33 16 15 H 0.07 2.16 7.26 -2.39 -0.02 2.15 16 16 N -0.70 -16.89 5.18 -436.85 -2.26 -19.15 16 17 C 0.54 18.88 7.85 87.66 0.69 19.57 16 18 O -0.56 -24.98 15.51 -3.02 -0.05 -25.03 16 19 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 20 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 21 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 22 H 0.06 3.93 8.03 -2.91 -0.02 3.90 16 23 C 0.05 2.73 5.50 84.86 0.47 3.20 16 24 N -0.92 -56.43 13.97 21.65 0.30 -56.13 16 25 Si 0.91 45.86 27.74 68.60 1.90 47.76 16 26 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.24 -11.96 6.74 99.48 0.67 -11.28 16 29 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.57 7.57 -2.39 -0.02 0.55 16 33 H 0.10 0.94 7.69 -2.39 -0.02 0.93 16 34 H 0.05 0.63 7.81 -2.39 -0.02 0.61 16 35 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.18 3.71 8.06 -2.91 -0.02 3.68 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 41 H 0.05 1.41 7.77 -2.39 -0.02 1.39 16 42 H 0.05 1.10 7.83 -2.38 -0.02 1.08 16 43 H 0.42 7.04 8.39 -92.71 -0.78 6.27 16 44 H 0.11 3.95 8.14 -2.39 -0.02 3.94 16 45 H 0.12 4.00 8.14 -2.40 -0.02 3.98 16 46 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -82.30 391.45 -0.27 -82.56 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.16 Total: 17.02 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 7.71 Total: -4.02 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -8.94 Total: -108.02 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.90 Total: 47.76 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -82.30 -0.27 -82.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.778 kcal (2) G-P(sol) polarization free energy of solvation -82.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds