Wall clock time and date at job start Tue Mar 31 2020 21:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64224 * 2 1 4 4 C 1.54331 * 110.85278 * 236.83134 * 2 1 3 5 5 N 1.47024 * 107.26485 * 219.67552 * 4 2 1 6 6 C 1.36942 * 125.64804 * 178.85190 * 5 4 2 7 7 H 1.08001 * 119.99606 * 347.84527 * 6 5 4 8 8 C 1.38816 * 119.99979 * 167.85098 * 6 5 4 9 9 N 1.31619 * 119.99549 * 326.25223 * 8 6 5 10 10 Si 1.86798 * 119.99876 * 145.98230 * 8 6 5 11 11 H 1.48493 * 109.47224 * 59.99521 * 10 8 6 12 12 H 1.48498 * 109.46688 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46793 * 299.99425 * 10 8 6 14 14 C 1.47426 * 108.70412 * 358.58104 * 5 4 2 15 15 C 1.54912 * 104.83023 * 24.36134 * 14 5 4 16 16 H 1.08998 * 111.00580 * 81.06222 * 15 14 5 17 17 N 1.46501 * 111.00258 * 204.87571 * 15 14 5 18 18 C 1.34772 * 119.99794 * 273.54330 * 17 15 14 19 19 O 1.21280 * 120.00206 * 0.02562 * 18 17 15 20 20 C 1.50705 * 119.99715 * 179.97438 * 18 17 15 21 21 C 1.52998 * 109.47028 * 179.97438 * 20 18 17 22 22 C 1.50705 * 109.47028 * 179.97438 * 21 20 18 23 23 C 1.38203 * 120.00015 * 264.72761 * 22 21 20 24 24 C 1.38431 * 119.99923 * 179.81588 * 23 22 21 25 25 F 1.35095 * 120.00386 * 180.23050 * 24 23 22 26 26 C 1.38480 * 119.99581 * 0.43797 * 24 23 22 27 27 C 1.38160 * 120.00092 * 359.79316 * 26 24 23 28 28 C 1.38431 * 119.99524 * 85.00428 * 22 21 20 29 29 F 1.35095 * 120.00060 * 359.95385 * 28 22 21 30 30 H 1.09000 * 109.47248 * 296.86104 * 1 2 3 31 31 H 1.08999 * 109.46789 * 56.86362 * 1 2 3 32 32 H 1.08999 * 109.46849 * 176.86040 * 1 2 3 33 33 H 1.09001 * 109.99174 * 100.20040 * 4 2 1 34 34 H 1.08999 * 109.77777 * 339.02466 * 4 2 1 35 35 H 0.97003 * 120.00486 * 353.97561 * 9 8 6 36 36 H 1.08998 * 110.36308 * 143.19575 * 14 5 4 37 37 H 1.08997 * 110.36799 * 265.40760 * 14 5 4 38 38 H 0.97002 * 119.99723 * 93.54875 * 17 15 14 39 39 H 1.08996 * 109.47030 * 300.00364 * 20 18 17 40 40 H 1.09007 * 109.46826 * 59.99945 * 20 18 17 41 41 H 1.08996 * 109.47681 * 300.00172 * 21 20 18 42 42 H 1.09006 * 109.46461 * 60.00494 * 21 20 18 43 43 H 1.08001 * 120.00001 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.99335 * 179.77185 * 26 24 23 45 45 H 1.08001 * 119.99774 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2072 5 7 3.2445 -1.5520 -0.7362 6 6 4.0044 -2.3995 -1.4975 7 1 3.6582 -2.7055 -2.4736 8 6 5.2196 -2.8654 -1.0144 9 7 5.9612 -2.0955 -0.2465 10 14 5.7985 -4.5877 -1.4480 11 1 5.9278 -4.7099 -2.9222 12 1 7.1169 -4.8411 -0.8132 13 1 4.8114 -5.5808 -0.9535 14 6 3.4633 -1.2485 0.6898 15 6 2.0789 -0.7933 1.2153 16 1 1.4451 -1.6510 1.4404 17 7 2.2213 0.0731 2.3880 18 6 2.3153 -0.4686 3.6185 19 8 2.2825 -1.6733 3.7549 20 6 2.4624 0.4226 4.8249 21 6 2.5465 -0.4377 6.0873 22 6 2.6942 0.4535 7.2936 23 6 3.9503 0.7269 7.8011 24 6 4.0862 1.5487 8.9068 25 9 5.3143 1.8197 9.4001 26 6 2.9629 2.0893 9.5098 27 6 1.7070 1.8121 9.0053 28 6 1.5713 0.9936 7.8967 29 9 0.3432 0.7226 7.4033 30 1 -0.3634 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 2.3815 -0.1004 -1.9962 34 1 1.3156 -1.4715 -1.5802 35 1 5.7025 -1.1739 -0.0892 36 1 3.7960 -2.1404 1.2207 37 1 4.1946 -0.4478 0.7994 38 1 2.2479 1.0365 2.2788 39 1 3.3708 1.0172 4.7287 40 1 1.5999 1.0856 4.8941 41 1 1.6378 -1.0320 6.1832 42 1 3.4088 -1.1008 6.0181 43 1 4.8259 0.3016 7.3334 44 1 3.0688 2.7274 10.3747 45 1 0.8310 2.2335 9.4759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211367616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:52 Heat of formation + Delta-G solvation = -91.730959 kcal Electronic energy + Delta-G solvation = -28701.765965 eV Core-core repulsion = 24355.216822 eV Total energy + Delta-G solvation = -4346.549143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.27467 -49.25209 -39.89541 -39.23141 -37.76219 -34.38237 -34.08082 -32.81558 -30.89653 -30.38761 -29.95923 -27.90575 -25.55379 -25.25072 -23.54365 -23.26258 -21.80019 -20.59883 -20.20272 -19.53438 -18.02707 -17.62425 -17.58696 -17.52092 -16.77560 -16.23351 -15.98981 -15.66187 -15.42488 -14.80762 -14.63673 -14.56721 -14.20867 -13.88071 -13.72536 -13.57630 -13.25867 -13.13213 -13.01143 -12.99074 -12.67693 -12.61879 -12.45073 -11.95952 -11.79266 -11.51513 -11.34177 -11.22036 -10.85932 -10.69630 -10.63127 -10.41691 -10.07930 -9.94908 -9.73888 -9.63940 -9.46158 -8.90273 -8.67081 -8.30973 -6.95362 -6.13103 -3.06576 0.52792 0.59537 2.83756 2.91005 3.34088 3.53525 3.60724 3.76157 3.76928 3.79201 4.12800 4.27120 4.54804 4.62939 4.69551 4.77755 4.89013 4.93123 5.03997 5.19567 5.26372 5.30119 5.33742 5.41982 5.44696 5.52441 5.58855 5.64781 5.65235 5.79675 5.86883 5.92726 5.94829 6.00065 6.05828 6.22525 6.30309 6.38060 6.58296 6.62159 6.80781 7.00049 7.09659 7.72682 7.81084 8.43860 8.50989 9.01802 9.83923 10.38307 11.21163 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002507 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.787404 B =11166.425635 C =12571.320446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.601 5.601 6 C -0.346 4.346 7 H 0.068 0.932 8 C -0.020 4.020 9 N -0.905 5.905 10 Si 1.056 2.944 11 H -0.293 1.293 12 H -0.286 1.286 13 H -0.293 1.293 14 C 0.142 3.858 15 C 0.130 3.870 16 H 0.093 0.907 17 N -0.717 5.717 18 C 0.512 3.488 19 O -0.535 6.535 20 C -0.134 4.134 21 C -0.068 4.068 22 C -0.082 4.082 23 C -0.121 4.121 24 C 0.092 3.908 25 F -0.135 7.135 26 C -0.131 4.131 27 C -0.124 4.124 28 C 0.091 3.909 29 F -0.131 7.131 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.056 0.944 37 H 0.024 0.976 38 H 0.396 0.604 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.149 0.851 44 H 0.144 0.856 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 12.475 18.450 24.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.129 4.129 3 H 0.093 0.907 4 C 0.016 3.984 5 N -0.329 5.329 6 C -0.473 4.473 7 H 0.086 0.914 8 C -0.223 4.223 9 N -0.545 5.545 10 Si 0.885 3.115 11 H -0.220 1.220 12 H -0.211 1.211 13 H -0.220 1.220 14 C 0.015 3.985 15 C 0.025 3.975 16 H 0.111 0.889 17 N -0.368 5.368 18 C 0.298 3.702 19 O -0.411 6.411 20 C -0.175 4.175 21 C -0.106 4.106 22 C -0.083 4.083 23 C -0.140 4.140 24 C 0.073 3.927 25 F -0.113 7.113 26 C -0.150 4.150 27 C -0.142 4.142 28 C 0.072 3.928 29 F -0.109 7.109 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.230 0.770 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.162 0.838 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.850 10.390 18.728 23.174 hybrid contribution -1.118 1.796 -0.414 2.155 sum -9.968 12.186 18.314 24.151 Atomic orbital electron populations 1.21736 0.94627 1.02043 1.01074 1.22420 0.95535 0.99174 0.95820 0.90679 1.21357 0.90542 0.92966 0.93573 1.44469 1.31991 1.51280 1.05112 1.19665 1.02093 1.23045 1.02484 0.91420 1.25669 0.91911 1.05095 0.99600 1.70796 1.35240 1.07765 1.40710 0.83663 0.75955 0.76397 0.75447 1.22011 1.21122 1.22049 1.21766 0.92123 0.98873 0.85754 1.22377 0.99278 0.92851 0.83005 0.88859 1.45922 1.74548 1.10056 1.06227 1.20477 0.76283 0.89154 0.84332 1.90739 1.49245 1.15090 1.86062 1.21619 1.04560 0.98805 0.92467 1.20336 1.05663 0.95923 0.88632 1.19857 0.91335 0.98951 0.98191 1.21041 0.98231 0.98865 0.95874 1.17678 0.80274 0.99433 0.95344 1.91532 1.40572 1.92335 1.86895 1.20985 0.90702 1.01782 1.01556 1.20986 0.98480 0.98912 0.95854 1.17569 0.80092 0.99739 0.95428 1.91527 1.40187 1.92253 1.86968 0.92982 0.92651 0.92376 0.95766 0.95203 0.92226 0.92557 0.95856 0.77009 0.88540 0.88920 0.89206 0.88900 0.83353 0.83782 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.16 37.16 0.34 -1.45 16 2 C -0.11 -1.78 3.16 -88.78 -0.28 -2.06 16 3 H 0.07 1.11 7.99 -51.93 -0.42 0.69 16 4 C 0.14 2.94 6.85 -3.06 -0.02 2.92 16 5 N -0.60 -15.58 3.33 -170.06 -0.57 -16.14 16 6 C -0.35 -10.02 9.97 -15.06 -0.15 -10.17 16 7 H 0.07 1.95 8.02 -52.49 -0.42 1.53 16 8 C -0.02 -0.60 4.96 -17.43 -0.09 -0.68 16 9 N -0.91 -27.92 12.86 55.49 0.71 -27.21 16 10 Si 1.06 26.10 30.03 -169.99 -5.10 21.00 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 C 0.14 3.40 5.03 -2.53 -0.01 3.39 16 15 C 0.13 2.40 2.77 -65.78 -0.18 2.21 16 16 H 0.09 1.90 7.63 -51.93 -0.40 1.50 16 17 N -0.72 -10.47 5.23 -51.72 -0.27 -10.74 16 18 C 0.51 7.76 7.83 -10.98 -0.09 7.68 16 19 O -0.54 -10.56 15.73 5.56 0.09 -10.47 16 20 C -0.13 -1.41 5.68 -27.88 -0.16 -1.57 16 21 C -0.07 -0.73 4.41 -27.88 -0.12 -0.85 16 22 C -0.08 -0.76 5.14 -104.56 -0.54 -1.30 16 23 C -0.12 -1.06 9.66 -39.52 -0.38 -1.44 16 24 C 0.09 0.78 7.30 -39.42 -0.29 0.50 16 25 F -0.13 -1.28 17.27 2.25 0.04 -1.24 16 26 C -0.13 -0.90 10.02 -39.52 -0.40 -1.29 16 27 C -0.12 -0.85 10.02 -39.52 -0.40 -1.25 16 28 C 0.09 0.81 7.24 -39.42 -0.29 0.53 16 29 F -0.13 -1.32 16.57 2.25 0.04 -1.28 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.03 0.61 7.77 -51.93 -0.40 0.21 16 35 H 0.27 8.25 6.43 -40.82 -0.26 7.98 16 36 H 0.06 1.58 7.81 -51.93 -0.41 1.17 16 37 H 0.02 0.59 7.02 -51.93 -0.36 0.23 16 38 H 0.40 4.45 8.52 -40.82 -0.35 4.10 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 41 H 0.09 1.06 7.75 -51.93 -0.40 0.65 16 42 H 0.09 1.07 8.01 -51.93 -0.42 0.65 16 43 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 45 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -34.62 381.42 -8.79 -43.41 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.43 Total: 1.77 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -3.04 Total: -4.84 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.12 Total: -54.09 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.10 Total: 21.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.62 -8.79 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211367616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.319 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds