Wall clock time and date at job start Tue Mar 31 2020 21:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.64224 * 2 1 4 4 C 1.54331 * 110.85278 * 236.83134 * 2 1 3 5 5 N 1.47024 * 107.26485 * 219.67552 * 4 2 1 6 6 C 1.36942 * 125.64804 * 178.85190 * 5 4 2 7 7 H 1.08001 * 119.99606 * 347.84527 * 6 5 4 8 8 C 1.38816 * 119.99979 * 167.85098 * 6 5 4 9 9 N 1.31619 * 119.99549 * 326.25223 * 8 6 5 10 10 Si 1.86798 * 119.99876 * 145.98230 * 8 6 5 11 11 H 1.48493 * 109.47224 * 59.99521 * 10 8 6 12 12 H 1.48498 * 109.46688 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46793 * 299.99425 * 10 8 6 14 14 C 1.47426 * 108.70412 * 358.58104 * 5 4 2 15 15 C 1.54912 * 104.83023 * 24.36134 * 14 5 4 16 16 H 1.08998 * 111.00580 * 81.06222 * 15 14 5 17 17 N 1.46501 * 111.00258 * 204.87571 * 15 14 5 18 18 C 1.34772 * 119.99794 * 273.54330 * 17 15 14 19 19 O 1.21280 * 120.00206 * 0.02562 * 18 17 15 20 20 C 1.50705 * 119.99715 * 179.97438 * 18 17 15 21 21 C 1.52998 * 109.47028 * 179.97438 * 20 18 17 22 22 C 1.50705 * 109.47028 * 179.97438 * 21 20 18 23 23 C 1.38203 * 120.00015 * 264.72761 * 22 21 20 24 24 C 1.38431 * 119.99923 * 179.81588 * 23 22 21 25 25 F 1.35095 * 120.00386 * 180.23050 * 24 23 22 26 26 C 1.38480 * 119.99581 * 0.43797 * 24 23 22 27 27 C 1.38160 * 120.00092 * 359.79316 * 26 24 23 28 28 C 1.38431 * 119.99524 * 85.00428 * 22 21 20 29 29 F 1.35095 * 120.00060 * 359.95385 * 28 22 21 30 30 H 1.09000 * 109.47248 * 296.86104 * 1 2 3 31 31 H 1.08999 * 109.46789 * 56.86362 * 1 2 3 32 32 H 1.08999 * 109.46849 * 176.86040 * 1 2 3 33 33 H 1.09001 * 109.99174 * 100.20040 * 4 2 1 34 34 H 1.08999 * 109.77777 * 339.02466 * 4 2 1 35 35 H 0.97003 * 120.00486 * 353.97561 * 9 8 6 36 36 H 1.08998 * 110.36308 * 143.19575 * 14 5 4 37 37 H 1.08997 * 110.36799 * 265.40760 * 14 5 4 38 38 H 0.97002 * 119.99723 * 93.54875 * 17 15 14 39 39 H 1.08996 * 109.47030 * 300.00364 * 20 18 17 40 40 H 1.09007 * 109.46826 * 59.99945 * 20 18 17 41 41 H 1.08996 * 109.47681 * 300.00172 * 21 20 18 42 42 H 1.09006 * 109.46461 * 60.00494 * 21 20 18 43 43 H 1.08001 * 120.00001 * 359.97438 * 23 22 21 44 44 H 1.07995 * 119.99335 * 179.77185 * 26 24 23 45 45 H 1.08001 * 119.99774 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2072 5 7 3.2445 -1.5520 -0.7362 6 6 4.0044 -2.3995 -1.4975 7 1 3.6582 -2.7055 -2.4736 8 6 5.2196 -2.8654 -1.0144 9 7 5.9612 -2.0955 -0.2465 10 14 5.7985 -4.5877 -1.4480 11 1 5.9278 -4.7099 -2.9222 12 1 7.1169 -4.8411 -0.8132 13 1 4.8114 -5.5808 -0.9535 14 6 3.4633 -1.2485 0.6898 15 6 2.0789 -0.7933 1.2153 16 1 1.4451 -1.6510 1.4404 17 7 2.2213 0.0731 2.3880 18 6 2.3153 -0.4686 3.6185 19 8 2.2825 -1.6733 3.7549 20 6 2.4624 0.4226 4.8249 21 6 2.5465 -0.4377 6.0873 22 6 2.6942 0.4535 7.2936 23 6 3.9503 0.7269 7.8011 24 6 4.0862 1.5487 8.9068 25 9 5.3143 1.8197 9.4001 26 6 2.9629 2.0893 9.5098 27 6 1.7070 1.8121 9.0053 28 6 1.5713 0.9936 7.8967 29 9 0.3432 0.7226 7.4033 30 1 -0.3634 0.4643 0.9168 31 1 -0.3633 0.5618 -0.8605 32 1 -0.3633 -1.0261 -0.0563 33 1 2.3815 -0.1004 -1.9962 34 1 1.3156 -1.4715 -1.5802 35 1 5.7025 -1.1739 -0.0892 36 1 3.7960 -2.1404 1.2207 37 1 4.1946 -0.4478 0.7994 38 1 2.2479 1.0365 2.2788 39 1 3.3708 1.0172 4.7287 40 1 1.5999 1.0856 4.8941 41 1 1.6378 -1.0320 6.1832 42 1 3.4088 -1.1008 6.0181 43 1 4.8259 0.3016 7.3334 44 1 3.0688 2.7274 10.3747 45 1 0.8310 2.2335 9.4759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211367616.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:51 Heat of formation + Delta-G solvation = -113.190540 kcal Electronic energy + Delta-G solvation = -28702.696522 eV Core-core repulsion = 24355.216822 eV Total energy + Delta-G solvation = -4347.479700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.95645 -49.95131 -41.17247 -40.02447 -39.30291 -35.88486 -35.16093 -34.42860 -32.19701 -31.61372 -30.76640 -29.48648 -27.27194 -26.33165 -25.04637 -23.96699 -22.78385 -22.10357 -21.69769 -20.90825 -19.61916 -18.70139 -18.40259 -18.26874 -17.82279 -17.53064 -16.86679 -16.61007 -16.38038 -16.33582 -15.79852 -15.58737 -15.42109 -15.34389 -15.10068 -14.69629 -14.55463 -14.38043 -14.23937 -13.99347 -13.78671 -13.57867 -13.49494 -13.38804 -13.03806 -12.72893 -12.64809 -12.51009 -12.18852 -12.12389 -12.10372 -11.97171 -11.92935 -11.68817 -11.60474 -10.98562 -10.49954 -10.15369 -10.12496 -9.56292 -9.08970 -8.44243 -5.33274 -0.11491 -0.00199 1.51702 1.59478 1.62018 1.79867 2.05910 2.34189 2.60099 3.08670 3.11934 3.16206 3.39858 3.49106 3.56509 3.62930 3.81617 3.85944 3.93535 3.97397 4.04727 4.15168 4.18383 4.31338 4.44561 4.51319 4.56167 4.69049 4.74337 4.77826 4.91918 4.94278 4.94686 4.98710 5.00914 5.02101 5.04629 5.09714 5.16417 5.19341 5.35106 5.51031 5.63107 5.76109 6.24151 6.53614 6.82258 7.25233 7.65329 8.23341 8.90106 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002507 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.787404 B =11166.425635 C =12571.320446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.099 0.901 4 C 0.132 3.868 5 N -0.626 5.626 6 C -0.357 4.357 7 H 0.065 0.935 8 C -0.076 4.076 9 N -0.933 5.933 10 Si 1.107 2.893 11 H -0.267 1.267 12 H -0.290 1.290 13 H -0.287 1.287 14 C 0.151 3.849 15 C 0.148 3.852 16 H 0.073 0.927 17 N -0.704 5.704 18 C 0.507 3.493 19 O -0.587 6.587 20 C -0.121 4.121 21 C -0.065 4.065 22 C -0.089 4.089 23 C -0.128 4.128 24 C 0.080 3.920 25 F -0.143 7.143 26 C -0.120 4.120 27 C -0.114 4.114 28 C 0.081 3.919 29 F -0.139 7.139 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.026 0.974 34 H 0.033 0.967 35 H 0.253 0.747 36 H 0.001 0.999 37 H 0.008 0.992 38 H 0.417 0.583 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.148 0.852 44 H 0.172 0.828 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 14.670 19.408 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.110 4.110 3 H 0.118 0.882 4 C 0.008 3.992 5 N -0.353 5.353 6 C -0.485 4.485 7 H 0.083 0.917 8 C -0.272 4.272 9 N -0.575 5.575 10 Si 0.931 3.069 11 H -0.192 1.192 12 H -0.216 1.216 13 H -0.214 1.214 14 C 0.024 3.976 15 C 0.041 3.959 16 H 0.091 0.909 17 N -0.356 5.356 18 C 0.295 3.705 19 O -0.466 6.466 20 C -0.160 4.160 21 C -0.103 4.103 22 C -0.090 4.090 23 C -0.146 4.146 24 C 0.061 3.939 25 F -0.122 7.122 26 C -0.138 4.138 27 C -0.132 4.132 28 C 0.061 3.939 29 F -0.118 7.118 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.026 0.974 38 H 0.255 0.745 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.166 0.834 44 H 0.189 0.811 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -10.698 12.648 19.670 25.716 hybrid contribution -0.571 1.131 -0.696 1.446 sum -11.268 13.780 18.974 26.016 Atomic orbital electron populations 1.21697 0.91446 1.02165 1.03366 1.22364 0.97879 0.98979 0.91764 0.88239 1.21617 0.88826 0.93090 0.95710 1.44744 1.32746 1.51954 1.05880 1.19953 1.02235 1.23523 1.02749 0.91717 1.27062 0.92631 1.07898 0.99652 1.70909 1.36290 1.07433 1.42875 0.82979 0.75217 0.71993 0.76695 1.19223 1.21641 1.21393 1.21591 0.95060 0.95959 0.84963 1.21894 0.95202 0.93567 0.85220 0.90883 1.45751 1.74048 1.10760 1.05045 1.21379 0.74616 0.89050 0.85444 1.90723 1.51402 1.17712 1.86813 1.21621 1.06756 0.98042 0.89626 1.20205 1.04209 0.96058 0.89782 1.19633 0.91872 0.99441 0.98021 1.21060 0.98113 0.99187 0.96287 1.17863 0.80552 0.99926 0.95587 1.91513 1.41224 1.92440 1.86981 1.21291 0.89853 1.00977 1.01695 1.21269 0.99494 0.97717 0.94743 1.17761 0.79495 1.00389 0.96209 1.91507 1.40632 1.92438 1.87216 0.90662 0.90346 0.93421 0.95587 0.94864 0.93709 0.98048 0.97444 0.74496 0.86424 0.86066 0.90679 0.90555 0.83385 0.81075 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.16 71.98 0.66 -2.29 16 2 C -0.09 -2.76 3.16 -9.60 -0.03 -2.79 16 3 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 4 C 0.13 5.44 6.85 86.73 0.59 6.03 16 5 N -0.63 -33.38 3.33 -691.95 -2.30 -35.68 16 6 C -0.36 -21.23 9.97 84.03 0.84 -20.40 16 7 H 0.06 3.79 8.02 -2.91 -0.02 3.77 16 8 C -0.08 -4.57 4.96 84.86 0.42 -4.15 16 9 N -0.93 -59.94 12.86 21.65 0.28 -59.66 16 10 Si 1.11 53.95 30.03 68.60 2.06 56.01 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 13 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 14 C 0.15 7.61 5.03 86.86 0.44 8.05 16 15 C 0.15 5.47 2.77 46.39 0.13 5.60 16 16 H 0.07 3.04 7.63 -2.39 -0.02 3.02 16 17 N -0.70 -19.91 5.23 -435.95 -2.28 -22.19 16 18 C 0.51 15.38 7.83 87.66 0.69 16.06 16 19 O -0.59 -24.21 15.73 -3.03 -0.05 -24.26 16 20 C -0.12 -2.38 5.68 29.85 0.17 -2.21 16 21 C -0.06 -1.40 4.41 29.85 0.13 -1.27 16 22 C -0.09 -1.56 5.14 -19.82 -0.10 -1.66 16 23 C -0.13 -2.14 9.66 22.31 0.22 -1.92 16 24 C 0.08 1.23 7.30 22.37 0.16 1.40 16 25 F -0.14 -2.55 17.27 44.97 0.78 -1.78 16 26 C -0.12 -1.28 10.02 22.31 0.22 -1.05 16 27 C -0.11 -1.22 10.02 22.31 0.22 -1.00 16 28 C 0.08 1.29 7.24 22.37 0.16 1.45 16 29 F -0.14 -2.57 16.57 44.97 0.74 -1.82 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.20 8.07 -2.39 -0.02 1.18 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.03 1.34 7.77 -2.39 -0.02 1.33 16 35 H 0.25 16.44 6.43 -92.71 -0.60 15.84 16 36 H 0.00 0.06 7.81 -2.39 -0.02 0.04 16 37 H 0.01 0.41 7.02 -2.39 -0.02 0.40 16 38 H 0.42 8.29 8.52 -92.71 -0.79 7.50 16 39 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.07 1.83 7.75 -2.39 -0.02 1.81 16 42 H 0.08 1.87 8.01 -2.38 -0.02 1.85 16 43 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 45 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 Total: -1.00 -80.72 381.42 4.55 -76.17 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.40 Total: 13.38 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 4.92 Total: -0.16 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -4.30 Total: -117.54 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.05 Total: -24.26 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 1.52 Total: -3.60 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 2.06 Total: 56.01 kcal Total: -80.72 4.55 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211367616.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.021 kcal (2) G-P(sol) polarization free energy of solvation -80.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds