Wall clock time and date at job start Tue Mar 31 2020 21:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 110.28931 * 2 1 4 4 C 1.54005 * 110.32382 * 237.86886 * 2 1 3 5 5 N 1.47485 * 107.24392 * 242.21213 * 4 2 1 6 6 C 1.34786 * 127.03052 * 154.61643 * 5 4 2 7 7 O 1.21282 * 119.99889 * 180.02562 * 6 5 4 8 8 C 1.50702 * 120.00009 * 0.02562 * 6 5 4 9 9 S 1.80995 * 109.47175 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00358 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.38792 * 120.00327 * 179.97438 * 10 9 8 13 13 N 1.31635 * 120.00020 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00203 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47057 * 60.00345 * 14 12 10 16 16 H 1.48501 * 109.47127 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46712 * 300.00384 * 14 12 10 18 18 C 1.48377 * 105.79701 * 334.78511 * 5 4 2 19 19 C 1.54616 * 110.41407 * 122.19690 * 2 1 3 20 20 H 1.09001 * 110.74249 * 22.26610 * 19 2 1 21 21 N 1.46896 * 110.73982 * 259.12095 * 19 2 1 22 22 C 1.46903 * 111.00023 * 154.99962 * 21 19 2 23 23 C 1.50704 * 109.46833 * 179.97438 * 22 21 19 24 24 N 1.30494 * 125.65167 * 269.68872 * 23 22 21 25 25 C 1.34128 * 109.25904 * 179.89722 * 24 23 22 26 26 C 1.34668 * 108.01749 * 0.37018 * 25 24 23 27 27 N 1.35044 * 125.64885 * 90.00308 * 23 22 21 28 28 C 1.46501 * 126.39554 * 359.94037 * 27 23 22 29 29 H 1.08999 * 109.46663 * 180.67805 * 1 2 3 30 30 H 1.09003 * 109.46588 * 300.67377 * 1 2 3 31 31 H 1.08997 * 109.47108 * 60.67602 * 1 2 3 32 32 H 1.09002 * 109.91501 * 1.67189 * 4 2 1 33 33 H 1.08999 * 109.90987 * 122.75800 * 4 2 1 34 34 H 1.08993 * 109.46997 * 300.00004 * 8 6 5 35 35 H 1.08999 * 109.46768 * 59.99751 * 8 6 5 36 36 H 0.96997 * 119.99887 * 180.02562 * 13 12 10 37 37 H 1.09005 * 110.51886 * 280.62106 * 18 5 4 38 38 H 1.09006 * 110.83140 * 157.65823 * 18 5 4 39 39 H 1.00904 * 110.99733 * 31.04567 * 21 19 2 40 40 H 1.09000 * 109.47276 * 300.00205 * 22 21 19 41 41 H 1.09002 * 109.46749 * 60.00199 * 22 21 19 42 42 H 1.08002 * 125.99037 * 180.11691 * 25 24 23 43 43 H 1.07999 * 126.59258 * 179.81107 * 26 25 24 44 44 H 1.09003 * 109.46869 * 90.00020 * 28 27 23 45 45 H 1.08999 * 109.46976 * 209.99720 * 28 27 23 46 46 H 1.08991 * 109.47341 * 329.99914 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7681 -1.2230 5 7 2.8326 -1.9201 -0.7143 6 6 3.0689 -3.0836 -1.3523 7 8 3.7207 -3.9509 -0.8103 8 6 2.5232 -3.3068 -2.7392 9 16 3.0076 -4.9509 -3.3209 10 6 2.2583 -4.9444 -4.9155 11 1 1.7046 -4.0789 -5.2484 12 6 2.3804 -6.0511 -5.7442 13 7 3.0556 -7.1058 -5.3386 14 14 1.5865 -6.0440 -7.4351 15 1 2.1470 -4.9294 -8.2404 16 1 1.8614 -7.3345 -8.1165 17 1 0.1195 -5.8626 -7.2924 18 6 3.2864 -1.5347 0.6448 19 6 2.0694 -0.7721 1.2262 20 1 1.3199 -1.4671 1.6050 21 7 2.4938 0.1579 2.2811 22 6 2.4401 -0.4836 3.6015 23 6 2.8820 0.4986 4.6556 24 7 4.1066 0.6651 5.0744 25 6 4.1268 1.6229 6.0132 26 6 2.8655 2.0610 6.1883 27 7 2.0754 1.3481 5.3274 28 6 0.6256 1.4820 5.1648 29 1 -0.3632 -1.0276 0.0122 30 1 -0.3632 0.5243 0.8839 31 1 -0.3633 0.5033 -0.8960 32 1 1.2333 -1.1172 -1.8350 33 1 2.7139 -0.1209 -1.8130 34 1 1.4359 -3.2343 -2.7178 35 1 2.9246 -2.5503 -3.4136 36 1 3.1412 -7.8790 -5.9178 37 1 4.1572 -0.8817 0.5860 38 1 3.5091 -2.4176 1.2441 39 1 1.9384 1.0002 2.2654 40 1 1.4191 -0.8044 3.8084 41 1 3.1021 -1.3495 3.6119 42 1 5.0007 1.9774 6.5395 43 1 2.5399 2.8278 6.8756 44 1 0.1189 0.8020 5.8496 45 1 0.3285 2.5074 5.3848 46 1 0.3508 1.2363 4.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214166999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:18 Heat of formation + Delta-G solvation = 38.022746 kcal Electronic energy + Delta-G solvation = -26261.298655 eV Core-core repulsion = 22506.509193 eV Total energy + Delta-G solvation = -3754.789463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41884 -39.99779 -37.90827 -35.45864 -34.37920 -32.67898 -32.41354 -30.81131 -29.71985 -27.83213 -27.31734 -26.48295 -25.55861 -25.22426 -22.37046 -21.73421 -20.76397 -20.03542 -19.33881 -17.74136 -17.42159 -16.78961 -16.44863 -16.08145 -15.69172 -15.28472 -14.92748 -14.79633 -14.69952 -14.19631 -14.10567 -13.86021 -13.79035 -13.57793 -13.30835 -13.26383 -13.13864 -12.86510 -12.78577 -12.51092 -12.25252 -11.98501 -11.73780 -11.35768 -11.28573 -11.03294 -11.03025 -10.87603 -10.76229 -10.23392 -9.96485 -9.81385 -9.38400 -9.04828 -9.01073 -8.73529 -8.47357 -8.21789 -6.48650 -6.20081 -3.90799 1.61492 2.34039 2.75986 2.93662 3.09616 3.24013 3.26074 3.29714 3.59025 3.81994 4.02656 4.14344 4.19991 4.22329 4.36397 4.42642 4.52256 4.57864 4.74095 4.81523 4.98065 5.07848 5.09769 5.10575 5.14723 5.17954 5.20407 5.34793 5.45901 5.52576 5.57764 5.60608 5.74148 5.77248 5.85580 5.87092 5.89577 5.97626 6.15101 6.30321 6.41778 6.58398 6.79328 6.84339 7.60267 7.74642 7.81972 8.36214 8.59391 9.24799 10.87268 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028745 B = 0.001937 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.841139 B =14449.690784 C =15080.034185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 H 0.093 0.907 4 C 0.109 3.891 5 N -0.629 5.629 6 C 0.553 3.447 7 O -0.515 6.515 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.118 3.882 19 C 0.076 3.924 20 H 0.065 0.935 21 N -0.668 5.668 22 C 0.145 3.855 23 C 0.208 3.792 24 N -0.470 5.470 25 C -0.027 4.027 26 C -0.059 4.059 27 N -0.461 5.461 28 C 0.071 3.929 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.341 0.659 40 H 0.047 0.953 41 H 0.108 0.892 42 H 0.170 0.830 43 H 0.174 0.826 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 22.927 21.036 32.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.111 0.889 4 C -0.015 4.015 5 N -0.367 5.367 6 C 0.341 3.659 7 O -0.388 6.388 8 C -0.297 4.297 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.005 4.005 19 C -0.034 4.034 20 H 0.083 0.917 21 N -0.300 5.300 22 C 0.015 3.985 23 C -0.054 4.054 24 N -0.188 5.188 25 C -0.176 4.176 26 C -0.192 4.192 27 N -0.144 5.144 28 C -0.072 4.072 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.160 0.840 40 H 0.065 0.935 41 H 0.126 0.874 42 H 0.187 0.813 43 H 0.191 0.809 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.444 20.778 21.349 30.480 hybrid contribution -2.995 1.718 -1.139 3.636 sum -9.440 22.496 20.210 31.680 Atomic orbital electron populations 1.21900 0.93982 1.02510 1.01969 1.22276 0.96183 1.00053 0.94179 0.88901 1.22077 0.95962 0.87694 0.95809 1.48801 1.55117 1.15366 1.17408 1.19987 0.79453 0.79432 0.87004 1.90716 1.38885 1.41863 1.67379 1.23500 1.03731 1.07525 0.94915 1.85415 1.70827 1.09222 1.17843 1.22816 1.39292 1.04774 1.01502 0.91005 1.24990 0.95184 0.94585 0.98813 1.70011 1.38481 1.04745 1.37009 0.86229 0.79515 0.77582 0.82196 1.19933 1.20804 1.19973 1.22371 0.96077 0.99044 0.83041 1.22733 0.96309 0.93746 0.90628 0.91669 1.60320 1.60281 1.07491 1.01933 1.20273 0.99876 0.94020 0.84354 1.23054 0.86088 0.97098 0.99157 1.70278 1.18735 1.17505 1.12286 1.22367 0.96528 0.98364 1.00311 1.22706 0.92079 1.03285 1.01106 1.45347 1.08401 1.29990 1.30710 1.22042 0.77463 1.04088 1.03633 0.92017 0.92847 0.91753 0.90372 0.91311 0.89399 0.89303 0.92127 0.90097 0.89973 0.84022 0.93512 0.87392 0.81266 0.80904 0.90371 0.89367 0.89854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.90 37.16 0.33 -0.58 16 2 C -0.11 -0.83 3.08 -89.24 -0.27 -1.10 16 3 H 0.09 0.63 7.93 -51.93 -0.41 0.22 16 4 C 0.11 1.16 6.41 -2.98 -0.02 1.14 16 5 N -0.63 -9.26 3.30 -169.54 -0.56 -9.82 16 6 C 0.55 10.91 7.91 -10.98 -0.09 10.82 16 7 O -0.51 -12.24 16.09 5.56 0.09 -12.16 16 8 C -0.15 -3.04 5.23 36.01 0.19 -2.85 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 11 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 14 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 C 0.12 1.50 6.77 -1.98 -0.01 1.48 16 19 C 0.08 0.67 2.95 -65.84 -0.19 0.48 16 20 H 0.07 0.58 7.54 -51.93 -0.39 0.19 16 21 N -0.67 -5.30 6.34 -106.01 -0.67 -5.97 16 22 C 0.15 1.17 5.64 -4.97 -0.03 1.15 16 23 C 0.21 1.99 7.42 -155.42 -1.15 0.84 16 24 N -0.47 -5.70 11.25 -10.81 -0.12 -5.82 16 25 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 26 C -0.06 -0.42 11.58 -16.56 -0.19 -0.61 16 27 N -0.46 -3.21 3.15 -121.28 -0.38 -3.59 16 28 C 0.07 0.20 10.79 59.85 0.65 0.85 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.82 7.08 -51.93 -0.37 0.45 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.68 7.91 -51.92 -0.41 1.27 16 35 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.17 7.87 -51.93 -0.41 0.76 16 39 H 0.34 2.17 8.32 -39.29 -0.33 1.85 16 40 H 0.05 0.28 7.65 -51.93 -0.40 -0.11 16 41 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.17 0.64 8.06 -52.49 -0.42 0.21 16 44 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 46 H 0.08 0.16 7.66 -51.93 -0.40 -0.23 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -37.50 395.82 -10.30 -47.80 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.31 Total: -1.53 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.81 Total: -1.87 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -1.00 Total: -50.76 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.50 -10.30 -47.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214166999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.821 kcal (2) G-P(sol) polarization free energy of solvation -37.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds