Wall clock time and date at job start Tue Mar 31 2020 21:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 110.28931 * 2 1 4 4 C 1.54005 * 110.32382 * 237.86886 * 2 1 3 5 5 N 1.47485 * 107.24392 * 242.21213 * 4 2 1 6 6 C 1.34786 * 127.03052 * 154.61643 * 5 4 2 7 7 O 1.21282 * 119.99889 * 180.02562 * 6 5 4 8 8 C 1.50702 * 120.00009 * 0.02562 * 6 5 4 9 9 S 1.80995 * 109.47175 * 179.97438 * 8 6 5 10 10 C 1.76194 * 100.00358 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.38792 * 120.00327 * 179.97438 * 10 9 8 13 13 N 1.31635 * 120.00020 * 0.02562 * 12 10 9 14 14 Si 1.86807 * 120.00203 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47057 * 60.00345 * 14 12 10 16 16 H 1.48501 * 109.47127 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46712 * 300.00384 * 14 12 10 18 18 C 1.48377 * 105.79701 * 334.78511 * 5 4 2 19 19 C 1.54616 * 110.41407 * 122.19690 * 2 1 3 20 20 H 1.09001 * 110.74249 * 22.26610 * 19 2 1 21 21 N 1.46896 * 110.73982 * 259.12095 * 19 2 1 22 22 C 1.46903 * 111.00023 * 154.99962 * 21 19 2 23 23 C 1.50704 * 109.46833 * 179.97438 * 22 21 19 24 24 N 1.30494 * 125.65167 * 269.68872 * 23 22 21 25 25 C 1.34128 * 109.25904 * 179.89722 * 24 23 22 26 26 C 1.34668 * 108.01749 * 0.37018 * 25 24 23 27 27 N 1.35044 * 125.64885 * 90.00308 * 23 22 21 28 28 C 1.46501 * 126.39554 * 359.94037 * 27 23 22 29 29 H 1.08999 * 109.46663 * 180.67805 * 1 2 3 30 30 H 1.09003 * 109.46588 * 300.67377 * 1 2 3 31 31 H 1.08997 * 109.47108 * 60.67602 * 1 2 3 32 32 H 1.09002 * 109.91501 * 1.67189 * 4 2 1 33 33 H 1.08999 * 109.90987 * 122.75800 * 4 2 1 34 34 H 1.08993 * 109.46997 * 300.00004 * 8 6 5 35 35 H 1.08999 * 109.46768 * 59.99751 * 8 6 5 36 36 H 0.96997 * 119.99887 * 180.02562 * 13 12 10 37 37 H 1.09005 * 110.51886 * 280.62106 * 18 5 4 38 38 H 1.09006 * 110.83140 * 157.65823 * 18 5 4 39 39 H 1.00904 * 110.99733 * 31.04567 * 21 19 2 40 40 H 1.09000 * 109.47276 * 300.00205 * 22 21 19 41 41 H 1.09002 * 109.46749 * 60.00199 * 22 21 19 42 42 H 1.08002 * 125.99037 * 180.11691 * 25 24 23 43 43 H 1.07999 * 126.59258 * 179.81107 * 26 25 24 44 44 H 1.09003 * 109.46869 * 90.00020 * 28 27 23 45 45 H 1.08999 * 109.46976 * 209.99720 * 28 27 23 46 46 H 1.08991 * 109.47341 * 329.99914 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0650 -0.7681 -1.2230 5 7 2.8326 -1.9201 -0.7143 6 6 3.0689 -3.0836 -1.3523 7 8 3.7207 -3.9509 -0.8103 8 6 2.5232 -3.3068 -2.7392 9 16 3.0076 -4.9509 -3.3209 10 6 2.2583 -4.9444 -4.9155 11 1 1.7046 -4.0789 -5.2484 12 6 2.3804 -6.0511 -5.7442 13 7 3.0556 -7.1058 -5.3386 14 14 1.5865 -6.0440 -7.4351 15 1 2.1470 -4.9294 -8.2404 16 1 1.8614 -7.3345 -8.1165 17 1 0.1195 -5.8626 -7.2924 18 6 3.2864 -1.5347 0.6448 19 6 2.0694 -0.7721 1.2262 20 1 1.3199 -1.4671 1.6050 21 7 2.4938 0.1579 2.2811 22 6 2.4401 -0.4836 3.6015 23 6 2.8820 0.4986 4.6556 24 7 4.1066 0.6651 5.0744 25 6 4.1268 1.6229 6.0132 26 6 2.8655 2.0610 6.1883 27 7 2.0754 1.3481 5.3274 28 6 0.6256 1.4820 5.1648 29 1 -0.3632 -1.0276 0.0122 30 1 -0.3632 0.5243 0.8839 31 1 -0.3633 0.5033 -0.8960 32 1 1.2333 -1.1172 -1.8350 33 1 2.7139 -0.1209 -1.8130 34 1 1.4359 -3.2343 -2.7178 35 1 2.9246 -2.5503 -3.4136 36 1 3.1412 -7.8790 -5.9178 37 1 4.1572 -0.8817 0.5860 38 1 3.5091 -2.4176 1.2441 39 1 1.9384 1.0002 2.2654 40 1 1.4191 -0.8044 3.8084 41 1 3.1021 -1.3495 3.6119 42 1 5.0007 1.9774 6.5395 43 1 2.5399 2.8278 6.8756 44 1 0.1189 0.8020 5.8496 45 1 0.3285 2.5074 5.3848 46 1 0.3508 1.2363 4.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214166999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:18 Heat of formation + Delta-G solvation = 11.332042 kcal Electronic energy + Delta-G solvation = -26262.456051 eV Core-core repulsion = 22506.509193 eV Total energy + Delta-G solvation = -3755.946858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.99542 -41.14724 -39.16527 -36.33188 -34.88061 -34.58617 -33.61030 -31.76061 -30.87526 -28.72952 -27.85432 -27.63498 -27.27034 -26.09062 -23.26112 -22.31106 -21.47941 -20.88555 -20.53047 -19.59684 -18.08572 -17.92521 -17.56681 -16.88289 -16.71979 -16.63244 -16.47664 -15.89392 -15.59097 -15.52954 -15.05017 -14.76264 -14.57564 -14.44140 -14.32410 -14.10147 -13.75647 -13.70560 -13.63236 -13.50739 -13.26269 -13.18495 -12.96850 -12.86429 -12.78569 -12.61346 -12.05320 -11.97490 -11.75352 -11.60803 -11.12720 -10.97653 -10.89136 -10.52829 -10.28878 -9.83691 -9.55458 -9.31901 -8.68640 -8.34187 -6.13484 1.04934 1.22862 1.44291 1.44543 1.54752 1.55044 1.89821 2.01580 2.17887 2.27472 2.99680 3.10183 3.21083 3.38116 3.53835 3.57942 3.84352 3.88582 3.93909 4.00646 4.22445 4.26470 4.27273 4.36325 4.39918 4.43342 4.49907 4.54964 4.62243 4.65721 4.68667 4.76590 4.84103 4.88591 4.89130 5.01084 5.10313 5.27150 5.32764 5.37864 5.41308 5.84479 5.86335 6.19659 6.26960 6.30375 6.42831 7.06388 7.09447 7.20956 8.74884 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028745 B = 0.001937 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.841139 B =14449.690784 C =15080.034185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.112 0.888 4 C 0.096 3.904 5 N -0.620 5.620 6 C 0.549 3.451 7 O -0.569 6.569 8 C -0.117 4.117 9 S -0.152 6.152 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.012 3.988 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.260 1.260 18 C 0.112 3.888 19 C 0.093 3.907 20 H 0.069 0.931 21 N -0.670 5.670 22 C 0.150 3.850 23 C 0.192 3.808 24 N -0.523 5.523 25 C -0.064 4.064 26 C -0.042 4.042 27 N -0.455 5.455 28 C 0.062 3.938 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.356 0.644 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.177 0.823 43 H 0.210 0.790 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.890 26.366 20.834 35.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 H 0.130 0.870 4 C -0.026 4.026 5 N -0.355 5.355 6 C 0.338 3.662 7 O -0.448 6.448 8 C -0.269 4.269 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.186 1.186 16 H -0.204 1.204 17 H -0.185 1.185 18 C -0.011 4.011 19 C -0.018 4.018 20 H 0.087 0.913 21 N -0.304 5.304 22 C 0.020 3.980 23 C -0.071 4.071 24 N -0.243 5.243 25 C -0.212 4.212 26 C -0.176 4.176 27 N -0.138 5.138 28 C -0.079 4.079 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.076 0.924 39 H 0.177 0.823 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.195 0.805 43 H 0.226 0.774 44 H 0.106 0.894 45 H 0.129 0.871 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.690 24.300 21.170 33.653 hybrid contribution -1.981 0.792 -0.924 2.325 sum -11.671 25.092 20.246 34.288 Atomic orbital electron populations 1.21887 0.92244 1.02200 1.03654 1.22241 0.97392 1.00071 0.91519 0.86974 1.22498 0.96018 0.86465 0.97621 1.48706 1.54076 1.14732 1.17974 1.19781 0.79264 0.80451 0.86735 1.90693 1.41523 1.44167 1.68382 1.23280 1.04880 1.02953 0.95738 1.85634 1.72124 1.15512 1.19251 1.23155 1.39330 1.05468 1.01409 0.89788 1.26163 0.95562 0.93904 1.03596 1.70188 1.40108 1.05634 1.38871 0.84984 0.78871 0.77937 0.76075 1.18623 1.20428 1.18470 1.22520 0.98136 0.98524 0.81901 1.22491 0.94056 0.93840 0.91408 0.91308 1.60133 1.60911 1.07766 1.01603 1.20182 1.00579 0.93039 0.84194 1.23112 0.86089 0.98018 0.99863 1.70181 1.20869 1.19231 1.14013 1.22711 0.98336 0.99081 1.01061 1.23232 0.91224 1.02757 1.00399 1.45561 1.09866 1.28757 1.29624 1.22390 0.74833 1.05884 1.04841 0.93336 0.90495 0.90798 0.89687 0.90089 0.87312 0.87625 0.91982 0.90381 0.92408 0.82319 0.90993 0.89846 0.80538 0.77353 0.89372 0.87147 0.88594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.90 71.98 0.64 -0.57 16 2 C -0.09 -1.12 3.08 -9.90 -0.03 -1.15 16 3 H 0.11 1.02 7.93 -2.39 -0.02 1.00 16 4 C 0.10 1.82 6.41 86.53 0.55 2.38 16 5 N -0.62 -17.99 3.30 -808.69 -2.67 -20.67 16 6 C 0.55 22.15 7.91 87.66 0.69 22.84 16 7 O -0.57 -28.56 16.09 -3.04 -0.05 -28.61 16 8 C -0.12 -4.88 5.23 71.24 0.37 -4.51 16 9 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 10 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 11 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 12 C 0.01 0.71 5.49 84.85 0.47 1.18 16 13 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 14 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 15 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 18 C 0.11 2.87 6.77 86.68 0.59 3.46 16 19 C 0.09 1.47 2.95 46.13 0.14 1.61 16 20 H 0.07 1.09 7.54 -2.39 -0.02 1.07 16 21 N -0.67 -9.37 6.34 -489.31 -3.10 -12.47 16 22 C 0.15 2.30 5.64 85.56 0.48 2.78 16 23 C 0.19 3.51 7.42 138.13 1.02 4.54 16 24 N -0.52 -12.97 11.25 -188.13 -2.12 -15.08 16 25 C -0.06 -1.20 11.87 83.52 0.99 -0.21 16 26 C -0.04 -0.51 11.58 83.09 0.96 0.46 16 27 N -0.46 -5.26 3.15 -537.62 -1.69 -6.95 16 28 C 0.06 0.12 10.79 127.77 1.38 1.50 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 1.53 7.08 -2.39 -0.02 1.51 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 4.03 7.91 -2.40 -0.02 4.02 16 35 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.06 1.76 7.87 -2.38 -0.02 1.74 16 39 H 0.36 3.33 8.32 -89.69 -0.75 2.58 16 40 H 0.07 0.72 7.65 -2.39 -0.02 0.70 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 43 H 0.21 0.79 8.06 -2.91 -0.02 0.76 16 44 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 46 H 0.10 -0.03 7.66 -2.39 -0.02 -0.05 16 Total: -1.00 -87.25 395.82 0.65 -86.60 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.23 Total: 14.18 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 8.90 Total: 3.50 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -9.30 Total: -111.50 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.05 Total: -28.61 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -87.25 0.65 -86.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214166999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.931 kcal (2) G-P(sol) polarization free energy of solvation -87.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds