Wall clock time and date at job start Tue Mar 31 2020 21:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.91443 * 2 1 4 4 C 1.55122 * 111.16475 * 236.07098 * 2 1 3 5 5 N 1.47421 * 104.94028 * 205.13164 * 4 2 1 6 6 C 1.34779 * 125.64671 * 204.04005 * 5 4 2 7 7 O 1.21279 * 119.99956 * 179.97438 * 6 5 4 8 8 C 1.50708 * 120.00019 * 359.95376 * 6 5 4 9 9 S 1.80993 * 109.47297 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00283 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99437 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00222 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99821 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46923 * 89.99828 * 14 12 10 16 16 H 1.48491 * 109.47178 * 209.99701 * 14 12 10 17 17 H 1.48495 * 109.47027 * 330.00057 * 14 12 10 18 18 C 1.47016 * 108.70711 * 24.00285 * 5 4 2 19 19 C 1.54326 * 107.27026 * 358.93939 * 18 5 4 20 20 H 1.09002 * 110.71924 * 96.35033 * 19 18 5 21 21 N 1.46906 * 110.72158 * 219.44496 * 19 18 5 22 22 C 1.46901 * 110.99793 * 271.15919 * 21 19 18 23 23 C 1.50701 * 109.46921 * 179.97438 * 22 21 19 24 24 C 1.39866 * 126.04042 * 269.69199 * 23 22 21 25 25 N 1.30841 * 108.20120 * 179.82154 * 24 23 22 26 26 N 1.40091 * 108.20334 * 0.43197 * 25 24 23 27 27 C 1.46494 * 126.03316 * 179.69934 * 26 25 24 28 28 C 1.34945 * 107.92641 * 359.72330 * 26 25 24 29 29 H 1.08997 * 109.47553 * 296.10183 * 1 2 3 30 30 H 1.09007 * 109.47124 * 56.09954 * 1 2 3 31 31 H 1.08996 * 109.47278 * 176.09769 * 1 2 3 32 32 H 1.09000 * 110.41850 * 86.20410 * 4 2 1 33 33 H 1.08997 * 110.20594 * 323.95469 * 4 2 1 34 34 H 1.09000 * 109.46947 * 300.00739 * 8 6 5 35 35 H 1.08999 * 109.46627 * 60.00069 * 8 6 5 36 36 H 0.96997 * 119.99673 * 180.02562 * 13 12 10 37 37 H 1.09005 * 109.88456 * 239.52200 * 18 5 4 38 38 H 1.08997 * 109.88478 * 118.35320 * 18 5 4 39 39 H 1.00898 * 110.99995 * 35.10996 * 21 19 18 40 40 H 1.09002 * 109.47401 * 59.99808 * 22 21 19 41 41 H 1.09001 * 109.46874 * 299.99821 * 22 21 19 42 42 H 1.07999 * 125.90014 * 359.97438 * 24 23 22 43 43 H 1.09001 * 109.47611 * 270.02895 * 27 26 25 44 44 H 1.09001 * 109.47505 * 30.02607 * 27 26 25 45 45 H 1.09003 * 109.47354 * 150.03048 * 27 26 25 46 46 H 1.08000 * 126.12596 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7704 6 6 4.4516 -1.5676 -1.5889 7 8 5.5151 -1.9179 -1.1228 8 6 4.2725 -1.4908 -3.0833 9 16 5.8114 -1.9791 -3.9013 10 6 5.3315 -1.8017 -5.5874 11 1 4.3321 -1.4740 -5.8326 12 6 6.2378 -2.0830 -6.6002 13 7 7.4561 -2.4818 -6.3012 14 14 5.7287 -1.8955 -8.3877 15 1 6.0257 -0.5141 -8.8447 16 1 6.4829 -2.8655 -9.2215 17 1 4.2729 -2.1576 -8.5178 18 6 3.4672 -1.2780 0.6990 19 6 2.0861 -0.8078 1.2023 20 1 1.4451 -1.6613 1.4230 21 7 2.2290 0.0521 2.3847 22 6 2.2280 -0.7452 3.6186 23 6 2.3767 0.1690 4.8074 24 6 3.5823 0.5634 5.3965 25 7 3.3068 1.3591 6.3980 26 7 1.9145 1.4884 6.4839 27 6 1.1824 2.2855 7.4712 28 6 1.3669 0.7486 5.4971 29 1 -0.3634 0.4521 0.9228 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1643 -0.1733 -2.0837 33 1 1.4547 -1.6695 -1.4034 34 1 3.4703 -2.1628 -3.3881 35 1 4.0182 -0.4695 -3.3667 36 1 8.0896 -2.6781 -7.0091 37 1 4.2435 -0.6055 1.0642 38 1 3.6612 -2.2936 1.0438 39 1 3.0612 0.6190 2.3212 40 1 3.0593 -1.4499 3.5965 41 1 1.2890 -1.2932 3.6963 42 1 4.5702 0.2649 5.0782 43 1 0.9646 1.6712 8.3449 44 1 1.7891 3.1402 7.7703 45 1 0.2486 2.6382 7.0332 46 1 0.3119 0.6392 5.2938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214168037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:04 Heat of formation + Delta-G solvation = 48.667773 kcal Electronic energy + Delta-G solvation = -25899.444361 eV Core-core repulsion = 22145.116501 eV Total energy + Delta-G solvation = -3754.327860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51008 -40.01001 -37.86227 -35.47403 -33.51229 -32.57944 -32.41412 -31.04510 -29.81229 -28.13022 -26.83853 -26.36431 -25.46193 -24.47947 -22.32556 -21.43072 -20.86353 -20.25177 -19.34495 -17.69095 -17.17801 -16.74975 -16.31862 -15.79915 -15.62638 -15.07723 -14.86646 -14.80604 -14.78241 -14.13920 -13.81660 -13.73479 -13.63258 -13.44396 -13.30445 -12.99716 -12.74268 -12.60646 -12.57876 -12.47298 -12.28427 -12.13775 -11.75710 -11.37381 -11.15276 -11.05400 -11.00904 -10.91293 -10.79743 -10.71955 -9.80667 -9.75657 -9.41898 -9.05548 -8.90478 -8.61745 -8.43895 -8.21905 -6.49054 -6.20468 -3.91112 1.55462 2.17140 2.42222 2.92237 3.08223 3.23215 3.26881 3.31266 3.62154 4.00730 4.14056 4.21252 4.33037 4.37926 4.48520 4.68355 4.73208 4.77932 4.94803 4.96289 5.02369 5.05392 5.10610 5.14623 5.18108 5.34358 5.39343 5.43018 5.46108 5.56796 5.60586 5.66206 5.71791 5.78340 5.84323 5.91775 5.98078 6.11356 6.15437 6.29573 6.42646 6.63898 6.76063 7.07339 7.35977 7.60612 7.68824 8.36398 8.57675 9.24719 10.86991 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.001847 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.399528 B =15156.739047 C =15854.074843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.088 0.912 4 C 0.102 3.898 5 N -0.623 5.623 6 C 0.547 3.453 7 O -0.517 6.517 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.083 3.917 19 C 0.080 3.920 20 H 0.094 0.906 21 N -0.671 5.671 22 C 0.136 3.864 23 C -0.237 4.237 24 C 0.055 3.945 25 N -0.300 5.300 26 N -0.379 5.379 27 C 0.102 3.898 28 C 0.075 3.925 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.346 0.654 40 H 0.041 0.959 41 H 0.077 0.923 42 H 0.182 0.818 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.468 7.635 24.393 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.106 0.894 4 C -0.022 4.022 5 N -0.361 5.361 6 C 0.336 3.664 7 O -0.391 6.391 8 C -0.297 4.297 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.042 4.042 19 C -0.031 4.031 20 H 0.112 0.888 21 N -0.302 5.302 22 C 0.006 3.994 23 C -0.249 4.249 24 C -0.132 4.132 25 N -0.121 5.121 26 N -0.161 5.161 27 C -0.040 4.040 28 C -0.072 4.072 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.165 0.835 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.199 0.801 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.910 7.985 26.083 32.632 hybrid contribution -1.006 -0.334 -2.368 2.595 sum -18.916 7.651 23.715 31.285 Atomic orbital electron populations 1.21620 0.93485 1.01838 1.02253 1.22368 0.96356 0.99616 0.92783 0.89364 1.22474 0.83439 0.98297 0.97955 1.48388 1.12755 1.69100 1.05853 1.20062 0.82240 0.75990 0.88123 1.90706 1.25625 1.45656 1.77092 1.23503 1.07777 1.05064 0.93324 1.85401 1.09193 1.87582 1.01280 1.22860 1.01476 1.52869 0.91113 0.90921 1.24992 0.94506 0.94531 0.99545 1.70021 1.04358 1.42462 1.33433 0.86164 0.78641 0.78145 0.82531 1.20270 1.20751 1.19690 1.22661 0.98097 1.01745 0.81702 1.22745 0.94652 0.95346 0.90337 0.88769 1.60690 1.45796 1.23340 1.00357 1.20170 1.01191 0.92459 0.85573 1.19932 0.91998 1.09736 1.03219 1.23862 0.99491 0.96049 0.93753 1.77392 0.90788 1.21961 1.21922 1.48493 1.04739 1.37810 1.25080 1.21850 0.95965 0.95482 0.90678 1.22327 0.99726 0.94736 0.90382 0.91633 0.92488 0.92693 0.90206 0.91303 0.89295 0.89297 0.92191 0.91694 0.91747 0.83489 0.94044 0.90433 0.80149 0.90810 0.89314 0.89438 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 9.31 37.16 0.35 -0.57 16 2 C -0.09 -0.78 3.33 -88.36 -0.29 -1.07 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 4 C 0.10 1.11 6.18 -2.42 -0.01 1.09 16 5 N -0.62 -9.11 3.33 -170.39 -0.57 -9.68 16 6 C 0.55 10.81 7.87 -10.98 -0.09 10.73 16 7 O -0.52 -12.27 16.19 5.56 0.09 -12.18 16 8 C -0.15 -3.05 5.16 36.01 0.19 -2.86 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 14 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.08 0.99 6.57 -3.07 -0.02 0.97 16 19 C 0.08 0.67 2.72 -65.88 -0.18 0.50 16 20 H 0.09 0.73 7.75 -51.93 -0.40 0.33 16 21 N -0.67 -5.16 6.36 -106.05 -0.67 -5.83 16 22 C 0.14 0.95 6.03 -4.97 -0.03 0.92 16 23 C -0.24 -1.88 5.61 -105.05 -0.59 -2.47 16 24 C 0.06 0.50 11.96 -17.36 -0.21 0.30 16 25 N -0.30 -3.14 12.58 30.62 0.39 -2.76 16 26 N -0.38 -3.00 4.01 -68.16 -0.27 -3.27 16 27 C 0.10 0.39 11.47 59.84 0.69 1.07 16 28 C 0.08 0.53 11.40 -17.22 -0.20 0.33 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.08 0.87 7.48 -51.93 -0.39 0.48 16 33 H 0.07 0.68 7.99 -51.93 -0.41 0.27 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 35 H 0.09 1.72 7.85 -51.92 -0.41 1.31 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.06 0.82 7.53 -51.93 -0.39 0.43 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.35 2.91 8.09 -39.29 -0.32 2.59 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 46 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 398.10 15.07 6.00 6.00 Total: -1.00 -36.88 398.10 -9.10 -45.98 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -7.36 Total: -1.12 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.20 Total: -4.12 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.40 Total: -47.13 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.88 -9.10 -45.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214168037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.649 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds