Wall clock time and date at job start Tue Mar 31 2020 21:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.91443 * 2 1 4 4 C 1.55122 * 111.16475 * 236.07098 * 2 1 3 5 5 N 1.47421 * 104.94028 * 205.13164 * 4 2 1 6 6 C 1.34779 * 125.64671 * 204.04005 * 5 4 2 7 7 O 1.21279 * 119.99956 * 179.97438 * 6 5 4 8 8 C 1.50708 * 120.00019 * 359.95376 * 6 5 4 9 9 S 1.80993 * 109.47297 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00283 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99437 * 0.02562 * 10 9 8 12 12 C 1.38798 * 120.00222 * 180.02562 * 10 9 8 13 13 N 1.31632 * 119.99821 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46923 * 89.99828 * 14 12 10 16 16 H 1.48491 * 109.47178 * 209.99701 * 14 12 10 17 17 H 1.48495 * 109.47027 * 330.00057 * 14 12 10 18 18 C 1.47016 * 108.70711 * 24.00285 * 5 4 2 19 19 C 1.54326 * 107.27026 * 358.93939 * 18 5 4 20 20 H 1.09002 * 110.71924 * 96.35033 * 19 18 5 21 21 N 1.46906 * 110.72158 * 219.44496 * 19 18 5 22 22 C 1.46901 * 110.99793 * 271.15919 * 21 19 18 23 23 C 1.50701 * 109.46921 * 179.97438 * 22 21 19 24 24 C 1.39866 * 126.04042 * 269.69199 * 23 22 21 25 25 N 1.30841 * 108.20120 * 179.82154 * 24 23 22 26 26 N 1.40091 * 108.20334 * 0.43197 * 25 24 23 27 27 C 1.46494 * 126.03316 * 179.69934 * 26 25 24 28 28 C 1.34945 * 107.92641 * 359.72330 * 26 25 24 29 29 H 1.08997 * 109.47553 * 296.10183 * 1 2 3 30 30 H 1.09007 * 109.47124 * 56.09954 * 1 2 3 31 31 H 1.08996 * 109.47278 * 176.09769 * 1 2 3 32 32 H 1.09000 * 110.41850 * 86.20410 * 4 2 1 33 33 H 1.08997 * 110.20594 * 323.95469 * 4 2 1 34 34 H 1.09000 * 109.46947 * 300.00739 * 8 6 5 35 35 H 1.08999 * 109.46627 * 60.00069 * 8 6 5 36 36 H 0.96997 * 119.99673 * 180.02562 * 13 12 10 37 37 H 1.09005 * 109.88456 * 239.52200 * 18 5 4 38 38 H 1.08997 * 109.88478 * 118.35320 * 18 5 4 39 39 H 1.00898 * 110.99995 * 35.10996 * 21 19 18 40 40 H 1.09002 * 109.47401 * 59.99808 * 22 21 19 41 41 H 1.09001 * 109.46874 * 299.99821 * 22 21 19 42 42 H 1.07999 * 125.90014 * 359.97438 * 24 23 22 43 43 H 1.09001 * 109.47611 * 270.02895 * 27 26 25 44 44 H 1.09001 * 109.47505 * 30.02607 * 27 26 25 45 45 H 1.09003 * 109.47354 * 150.03048 * 27 26 25 46 46 H 1.08000 * 126.12596 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7704 6 6 4.4516 -1.5676 -1.5889 7 8 5.5151 -1.9179 -1.1228 8 6 4.2725 -1.4908 -3.0833 9 16 5.8114 -1.9791 -3.9013 10 6 5.3315 -1.8017 -5.5874 11 1 4.3321 -1.4740 -5.8326 12 6 6.2378 -2.0830 -6.6002 13 7 7.4561 -2.4818 -6.3012 14 14 5.7287 -1.8955 -8.3877 15 1 6.0257 -0.5141 -8.8447 16 1 6.4829 -2.8655 -9.2215 17 1 4.2729 -2.1576 -8.5178 18 6 3.4672 -1.2780 0.6990 19 6 2.0861 -0.8078 1.2023 20 1 1.4451 -1.6613 1.4230 21 7 2.2290 0.0521 2.3847 22 6 2.2280 -0.7452 3.6186 23 6 2.3767 0.1690 4.8074 24 6 3.5823 0.5634 5.3965 25 7 3.3068 1.3591 6.3980 26 7 1.9145 1.4884 6.4839 27 6 1.1824 2.2855 7.4712 28 6 1.3669 0.7486 5.4971 29 1 -0.3634 0.4521 0.9228 30 1 -0.3634 0.5732 -0.8530 31 1 -0.3633 -1.0252 -0.0699 32 1 2.1643 -0.1733 -2.0837 33 1 1.4547 -1.6695 -1.4034 34 1 3.4703 -2.1628 -3.3881 35 1 4.0182 -0.4695 -3.3667 36 1 8.0896 -2.6781 -7.0091 37 1 4.2435 -0.6055 1.0642 38 1 3.6612 -2.2936 1.0438 39 1 3.0612 0.6190 2.3212 40 1 3.0593 -1.4499 3.5965 41 1 1.2890 -1.2932 3.6963 42 1 4.5702 0.2649 5.0782 43 1 0.9646 1.6712 8.3449 44 1 1.7891 3.1402 7.7703 45 1 0.2486 2.6382 7.0332 46 1 0.3119 0.6392 5.2938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214168037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:03 Heat of formation + Delta-G solvation = 22.384886 kcal Electronic energy + Delta-G solvation = -25900.584072 eV Core-core repulsion = 22145.116501 eV Total energy + Delta-G solvation = -3755.467571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.07891 -41.17159 -39.09733 -36.28083 -34.59239 -34.14784 -33.42174 -31.85766 -31.04933 -28.93176 -27.76334 -27.45390 -27.17385 -25.16707 -23.18679 -21.98750 -21.52713 -20.90249 -20.76646 -19.59078 -18.07797 -17.71935 -17.43525 -16.88687 -16.71708 -16.40341 -16.13471 -16.00978 -15.56707 -15.36932 -14.95654 -14.67293 -14.55419 -14.36749 -14.05982 -13.91699 -13.62668 -13.49168 -13.45619 -13.24277 -13.16818 -13.12884 -12.91452 -12.89235 -12.77667 -12.61440 -12.10613 -11.83555 -11.75370 -11.55099 -11.40025 -11.14578 -10.98837 -10.34321 -10.29336 -9.76766 -9.49696 -9.18724 -8.69155 -8.34962 -6.14117 1.00447 1.23100 1.42931 1.44677 1.53606 1.56267 1.73029 1.80837 2.07863 2.26972 2.99206 3.19783 3.33822 3.54879 3.56399 3.70353 3.91062 4.02785 4.09384 4.19112 4.22937 4.32952 4.37220 4.42568 4.43457 4.46460 4.53482 4.62954 4.70140 4.71943 4.76810 4.82151 4.88395 4.93319 4.98010 5.19411 5.26690 5.30921 5.38830 5.41256 5.55345 5.69921 6.10140 6.19411 6.20269 6.34888 6.39698 6.76519 7.05953 7.08939 8.74413 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026349 B = 0.001847 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.399528 B =15156.739047 C =15854.074843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 H 0.082 0.918 4 C 0.092 3.908 5 N -0.614 5.614 6 C 0.544 3.456 7 O -0.570 6.570 8 C -0.119 4.119 9 S -0.152 6.152 10 C -0.546 4.546 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.268 1.268 16 H -0.277 1.277 17 H -0.257 1.257 18 C 0.078 3.922 19 C 0.097 3.903 20 H 0.112 0.888 21 N -0.664 5.664 22 C 0.141 3.859 23 C -0.250 4.250 24 C 0.040 3.960 25 N -0.343 5.343 26 N -0.383 5.383 27 C 0.093 3.907 28 C 0.082 3.918 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.271 0.729 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.341 0.659 40 H 0.034 0.966 41 H 0.094 0.906 42 H 0.185 0.815 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.505 8.402 24.244 34.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.101 4.101 3 H 0.100 0.900 4 C -0.030 4.030 5 N -0.348 5.348 6 C 0.332 3.668 7 O -0.449 6.449 8 C -0.270 4.270 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.191 4.191 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.181 1.181 18 C -0.047 4.047 19 C -0.015 4.015 20 H 0.130 0.870 21 N -0.294 5.294 22 C 0.011 3.989 23 C -0.262 4.262 24 C -0.146 4.146 25 N -0.165 5.165 26 N -0.165 5.165 27 C -0.047 4.047 28 C -0.066 4.066 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.053 0.947 41 H 0.112 0.888 42 H 0.202 0.798 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.134 0.866 46 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -22.012 8.781 25.979 35.164 hybrid contribution 0.151 -0.521 -2.150 2.218 sum -21.861 8.260 23.828 33.375 Atomic orbital electron populations 1.21580 0.91415 1.02651 1.02855 1.22321 0.97755 0.98696 0.91291 0.89978 1.22850 0.81491 0.99468 0.99233 1.48331 1.12938 1.66745 1.06794 1.19842 0.82680 0.76247 0.88053 1.90682 1.27943 1.48543 1.77682 1.23296 1.03872 1.06090 0.93732 1.85599 1.15266 1.88488 1.03173 1.23194 1.02071 1.52994 0.91137 0.89827 1.26153 0.94293 0.93724 1.04972 1.70190 1.05824 1.43587 1.35193 0.84928 0.78915 0.78408 0.75574 1.19284 1.20264 1.18055 1.22929 1.00444 1.01384 0.79894 1.22699 0.92315 0.95906 0.90533 0.86998 1.60754 1.45344 1.22922 1.00344 1.20171 1.01752 0.92083 0.84848 1.20064 0.91793 1.10510 1.03857 1.24091 1.00441 0.96145 0.93904 1.77315 0.92829 1.23311 1.23070 1.48835 1.04059 1.37907 1.25707 1.22167 0.96583 0.95240 0.90738 1.22862 1.00983 0.93415 0.89352 0.90967 0.91996 0.91759 0.89992 0.89451 0.87466 0.87568 0.91972 0.92746 0.92431 0.84035 0.94731 0.88757 0.79842 0.89646 0.89694 0.86598 0.77681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 9.31 71.98 0.67 -0.55 16 2 C -0.08 -1.14 3.33 -9.33 -0.03 -1.17 16 3 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 4 C 0.09 1.76 6.18 86.93 0.54 2.30 16 5 N -0.61 -17.39 3.33 -811.38 -2.70 -20.09 16 6 C 0.54 21.71 7.87 87.66 0.69 22.40 16 7 O -0.57 -28.20 16.19 -3.03 -0.05 -28.25 16 8 C -0.12 -4.95 5.16 71.24 0.37 -4.58 16 9 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 10 C -0.55 -31.56 9.50 67.95 0.65 -30.92 16 11 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 12 C 0.01 0.76 5.49 84.86 0.47 1.23 16 13 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 14 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 15 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 18 C 0.08 1.81 6.57 86.73 0.57 2.38 16 19 C 0.10 1.39 2.72 46.10 0.13 1.51 16 20 H 0.11 1.31 7.75 -2.39 -0.02 1.29 16 21 N -0.66 -8.80 6.36 -489.43 -3.11 -11.91 16 22 C 0.14 1.70 6.03 85.56 0.52 2.21 16 23 C -0.25 -3.64 5.61 -20.14 -0.11 -3.75 16 24 C 0.04 0.73 11.96 85.23 1.02 1.75 16 25 N -0.34 -7.23 12.58 -57.02 -0.72 -7.95 16 26 N -0.38 -5.53 4.01 -369.57 -1.48 -7.01 16 27 C 0.09 0.54 11.47 127.77 1.47 2.00 16 28 C 0.08 0.96 11.40 83.54 0.95 1.91 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.53 8.08 -2.39 -0.02 0.51 16 32 H 0.08 1.58 7.48 -2.39 -0.02 1.56 16 33 H 0.09 1.43 7.99 -2.39 -0.02 1.41 16 34 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 35 H 0.11 4.02 7.85 -2.40 -0.02 4.00 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.05 1.39 7.53 -2.38 -0.02 1.37 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.34 5.36 8.09 -89.70 -0.73 4.64 16 40 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 42 H 0.18 2.91 8.06 -2.91 -0.02 2.88 16 43 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 Total: -1.00 -83.71 398.10 1.22 -82.49 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.25 Total: 16.31 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 7.88 Total: -3.27 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -7.72 Total: -103.22 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.05 Total: -28.25 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -83.71 1.22 -82.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214168037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.875 kcal (2) G-P(sol) polarization free energy of solvation -83.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds