Wall clock time and date at job start Tue Mar 31 2020 21:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34776 * 125.64758 * 178.97550 * 5 4 2 7 7 O 1.21278 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99804 * 359.97438 * 6 5 4 9 9 S 1.81008 * 109.46843 * 179.97438 * 8 6 5 10 10 C 1.76200 * 99.99881 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00146 * 0.02562 * 10 9 8 12 12 C 1.38792 * 120.00045 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99838 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00216 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47041 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47256 * 120.00057 * 14 12 10 17 17 H 1.48499 * 109.47307 * 239.99975 * 14 12 10 18 18 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 19 19 C 1.54915 * 104.83334 * 24.12789 * 18 5 4 20 20 H 1.09001 * 111.00387 * 81.05917 * 19 18 5 21 21 N 1.46899 * 111.00365 * 204.91810 * 19 18 5 22 22 C 1.46895 * 110.99707 * 267.19539 * 21 19 18 23 23 C 1.52999 * 109.47018 * 180.02562 * 22 21 19 24 24 N 1.46505 * 109.47057 * 179.97438 * 23 22 21 25 25 C 1.34946 * 126.03581 * 125.00108 * 24 23 22 26 26 C 1.35316 * 107.74621 * 179.97438 * 25 24 23 27 27 C 1.39870 * 107.91958 * 359.97438 * 26 25 24 28 28 N 1.30835 * 108.20247 * 359.74015 * 27 26 25 29 29 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 30 30 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 31 31 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 32 32 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 33 33 H 1.09000 * 109.87987 * 99.87020 * 4 2 1 34 34 H 1.09002 * 109.47258 * 299.99966 * 8 6 5 35 35 H 1.08999 * 109.47362 * 60.00045 * 8 6 5 36 36 H 0.97004 * 120.00134 * 179.97438 * 13 12 10 37 37 H 1.08997 * 110.36855 * 142.96531 * 18 5 4 38 38 H 1.08999 * 110.36490 * 265.17846 * 18 5 4 39 39 H 1.00894 * 111.00084 * 31.14769 * 21 19 18 40 40 H 1.09005 * 109.47344 * 299.99945 * 22 21 19 41 41 H 1.08999 * 109.47829 * 60.00244 * 22 21 19 42 42 H 1.08994 * 109.47366 * 300.00097 * 23 22 21 43 43 H 1.08997 * 109.47343 * 59.99881 * 23 22 21 44 44 H 1.07996 * 126.13187 * 359.95895 * 25 24 23 45 45 H 1.07998 * 126.04093 * 180.02562 * 26 25 24 46 46 H 1.07998 * 125.89789 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9922 -2.3838 -1.4897 7 8 4.9382 -2.9604 -0.9963 8 6 3.6527 -2.5985 -2.9422 9 16 4.8325 -3.7613 -3.6719 10 6 4.2170 -3.8267 -5.3216 11 1 3.3520 -3.2424 -5.5989 12 6 4.8444 -4.6282 -6.2651 13 7 5.8990 -5.3399 -5.9274 14 14 4.1916 -4.6981 -8.0139 15 1 3.0055 -3.8127 -8.1353 16 1 5.2466 -4.2431 -8.9548 17 1 3.8039 -6.0935 -8.3422 18 6 3.4632 -1.2499 0.6876 19 6 2.0789 -0.7955 1.2139 20 1 1.4450 -1.6536 1.4375 21 7 2.2218 0.0719 2.3907 22 6 2.1559 -0.7103 3.6323 23 6 2.3076 0.2254 4.8333 24 7 2.2411 -0.5547 6.0716 25 6 3.1674 -0.5667 7.0529 26 6 2.7344 -1.4102 8.0184 27 6 1.5011 -1.9311 7.6135 28 7 1.2016 -1.4144 6.4494 29 1 -0.3634 -1.0271 0.0321 30 1 -0.3633 0.5414 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 1.3129 -1.4758 -1.5775 33 1 2.3715 -0.1026 -1.9988 34 1 2.6443 -3.0044 -3.0235 35 1 3.7054 -1.6475 -3.4721 36 1 6.3373 -5.9004 -6.5867 37 1 3.7959 -2.1427 1.2170 38 1 4.1946 -0.4493 0.7985 39 1 3.0767 0.6058 2.3447 40 1 1.1946 -1.2211 3.6893 41 1 2.9596 -1.4465 3.6412 42 1 3.2685 0.7366 4.7766 43 1 1.5036 0.9613 4.8244 44 1 4.0892 -0.0042 7.0655 45 1 3.2497 -1.6400 8.9393 46 1 0.8978 -2.6344 8.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214173902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:33 Heat of formation + Delta-G solvation = 48.659447 kcal Electronic energy + Delta-G solvation = -25823.659635 eV Core-core repulsion = 22069.331414 eV Total energy + Delta-G solvation = -3754.328221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.45300 -40.13739 -38.03377 -36.08739 -33.53228 -32.49578 -32.43486 -30.60622 -30.14851 -28.71209 -26.74641 -26.36545 -25.46751 -23.56507 -22.45224 -21.40999 -21.07592 -20.44080 -19.41719 -17.78400 -17.62837 -16.71142 -16.65154 -16.27278 -15.31950 -15.06097 -14.93146 -14.81954 -14.71193 -14.40916 -13.96700 -13.83978 -13.74760 -13.50157 -13.29389 -13.09558 -12.94875 -12.69875 -12.56309 -12.42267 -12.20948 -11.94637 -11.81968 -11.40297 -11.22425 -11.08298 -11.03024 -10.97118 -10.94491 -10.77117 -9.82809 -9.78530 -9.48929 -9.08892 -8.98849 -8.93919 -8.54820 -8.25186 -6.52327 -6.23254 -3.94130 1.54172 2.07558 2.52279 2.83484 3.01234 3.20516 3.24131 3.29866 3.51911 3.69784 4.07038 4.17684 4.21412 4.30016 4.46942 4.51425 4.58477 4.71012 4.78121 4.96208 4.98912 5.03522 5.11450 5.12057 5.24939 5.27357 5.39469 5.42123 5.46307 5.50206 5.54525 5.57335 5.66483 5.67170 5.73444 5.85322 5.91795 6.04313 6.11683 6.27406 6.30999 6.48713 6.62704 6.81102 7.35291 7.58207 7.61273 8.34003 8.50379 9.22144 10.84271 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.001845 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.721405 B =15173.150705 C =15977.227279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 H 0.089 0.911 4 C 0.103 3.897 5 N -0.623 5.623 6 C 0.548 3.452 7 O -0.516 6.516 8 C -0.146 4.146 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.082 3.918 19 C 0.081 3.919 20 H 0.096 0.904 21 N -0.670 5.670 22 C 0.047 3.953 23 C 0.136 3.864 24 N -0.371 5.371 25 C 0.053 3.947 26 C -0.276 4.276 27 C 0.043 3.957 28 N -0.294 5.294 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.344 0.656 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.173 0.827 45 H 0.147 0.853 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 15.038 23.828 29.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.361 5.361 6 C 0.337 3.663 7 O -0.390 6.390 8 C -0.297 4.297 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.043 4.043 19 C -0.030 4.030 20 H 0.114 0.886 21 N -0.300 5.300 22 C -0.083 4.083 23 C 0.014 3.986 24 N -0.154 5.154 25 C -0.093 4.093 26 C -0.305 4.305 27 C -0.143 4.143 28 N -0.115 5.115 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.163 0.837 40 H 0.108 0.892 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.190 0.810 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.194 14.302 23.385 29.246 hybrid contribution 0.114 0.164 -1.023 1.042 sum -10.079 14.466 22.362 28.476 Atomic orbital electron populations 1.21694 0.93370 1.02144 1.02251 1.22184 0.96742 0.99467 0.92443 0.89225 1.22166 0.87958 0.94898 0.97059 1.48360 1.31208 1.46218 1.10324 1.20080 0.81354 0.77110 0.87756 1.90708 1.27959 1.47048 1.73318 1.23502 1.06343 1.06020 0.93787 1.85406 1.36482 1.53374 1.08257 1.22897 1.17757 1.32310 0.95289 0.90844 1.24999 0.94707 0.94599 0.99316 1.70030 1.19047 1.26325 1.34874 0.86107 0.78798 0.78086 0.82441 1.19594 1.20551 1.20542 1.22845 0.97295 1.01124 0.83032 1.22878 0.95393 0.95134 0.89624 0.88578 1.60439 1.43248 1.25815 1.00510 1.22230 1.03140 0.94903 0.88058 1.21617 1.04137 0.92771 0.80054 1.48659 1.15289 1.35375 1.16117 1.22607 0.95907 1.00990 0.89791 1.21541 0.99645 1.06143 1.03205 1.23930 0.96698 0.99940 0.93711 1.77376 1.10181 1.08284 1.15665 0.92587 0.91614 0.92327 0.91020 0.91081 0.89241 0.89246 0.92223 0.90681 0.91749 0.83702 0.89175 0.94200 0.88684 0.88701 0.80976 0.83539 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.13 37.16 0.34 -0.65 16 2 C -0.09 -0.72 3.25 -88.78 -0.29 -1.01 16 3 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.10 1.11 6.08 -3.06 -0.02 1.09 16 5 N -0.62 -8.99 3.33 -170.52 -0.57 -9.56 16 6 C 0.55 10.74 7.87 -10.99 -0.09 10.65 16 7 O -0.52 -12.16 16.12 5.56 0.09 -12.07 16 8 C -0.15 -3.03 5.35 36.01 0.19 -2.84 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.53 -15.30 9.50 30.94 0.29 -15.00 16 11 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 14 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.08 0.95 6.50 -2.53 -0.02 0.94 16 19 C 0.08 0.69 2.83 -65.56 -0.19 0.51 16 20 H 0.10 0.91 7.72 -51.93 -0.40 0.51 16 21 N -0.67 -4.38 6.41 -104.46 -0.67 -5.05 16 22 C 0.05 0.33 5.74 -3.83 -0.02 0.31 16 23 C 0.14 0.79 6.77 -4.04 -0.03 0.76 16 24 N -0.37 -3.04 3.68 -61.37 -0.23 -3.27 16 25 C 0.05 0.36 11.45 -17.22 -0.20 0.17 16 26 C -0.28 -1.99 10.80 -40.01 -0.43 -2.42 16 27 C 0.04 0.36 12.03 -17.37 -0.21 0.15 16 28 N -0.29 -3.02 12.42 30.62 0.38 -2.64 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.76 7.82 -51.93 -0.41 0.36 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 38 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 39 H 0.34 1.84 8.19 -39.30 -0.32 1.52 16 40 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.09 0.32 8.07 -51.93 -0.42 -0.10 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 398.64 15.07 6.01 6.01 Total: -1.00 -36.49 398.64 -9.64 -46.14 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.40 Total: -1.20 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -0.75 Total: -5.35 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.35 Total: -46.04 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.49 -9.64 -46.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214173902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.795 kcal (2) G-P(sol) polarization free energy of solvation -36.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds