Wall clock time and date at job start Tue Mar 31 2020 21:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34776 * 125.64758 * 178.97550 * 5 4 2 7 7 O 1.21278 * 119.99712 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99804 * 359.97438 * 6 5 4 9 9 S 1.81008 * 109.46843 * 179.97438 * 8 6 5 10 10 C 1.76200 * 99.99881 * 179.97438 * 9 8 6 11 11 H 1.08004 * 120.00146 * 0.02562 * 10 9 8 12 12 C 1.38792 * 120.00045 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99838 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00216 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47041 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47256 * 120.00057 * 14 12 10 17 17 H 1.48499 * 109.47307 * 239.99975 * 14 12 10 18 18 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 19 19 C 1.54915 * 104.83334 * 24.12789 * 18 5 4 20 20 H 1.09001 * 111.00387 * 81.05917 * 19 18 5 21 21 N 1.46899 * 111.00365 * 204.91810 * 19 18 5 22 22 C 1.46895 * 110.99707 * 267.19539 * 21 19 18 23 23 C 1.52999 * 109.47018 * 180.02562 * 22 21 19 24 24 N 1.46505 * 109.47057 * 179.97438 * 23 22 21 25 25 C 1.34946 * 126.03581 * 125.00108 * 24 23 22 26 26 C 1.35316 * 107.74621 * 179.97438 * 25 24 23 27 27 C 1.39870 * 107.91958 * 359.97438 * 26 25 24 28 28 N 1.30835 * 108.20247 * 359.74015 * 27 26 25 29 29 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 30 30 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 31 31 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 32 32 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 33 33 H 1.09000 * 109.87987 * 99.87020 * 4 2 1 34 34 H 1.09002 * 109.47258 * 299.99966 * 8 6 5 35 35 H 1.08999 * 109.47362 * 60.00045 * 8 6 5 36 36 H 0.97004 * 120.00134 * 179.97438 * 13 12 10 37 37 H 1.08997 * 110.36855 * 142.96531 * 18 5 4 38 38 H 1.08999 * 110.36490 * 265.17846 * 18 5 4 39 39 H 1.00894 * 111.00084 * 31.14769 * 21 19 18 40 40 H 1.09005 * 109.47344 * 299.99945 * 22 21 19 41 41 H 1.08999 * 109.47829 * 60.00244 * 22 21 19 42 42 H 1.08994 * 109.47366 * 300.00097 * 23 22 21 43 43 H 1.08997 * 109.47343 * 59.99881 * 23 22 21 44 44 H 1.07996 * 126.13187 * 359.95895 * 25 24 23 45 45 H 1.07998 * 126.04093 * 180.02562 * 26 25 24 46 46 H 1.07998 * 125.89789 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9922 -2.3838 -1.4897 7 8 4.9382 -2.9604 -0.9963 8 6 3.6527 -2.5985 -2.9422 9 16 4.8325 -3.7613 -3.6719 10 6 4.2170 -3.8267 -5.3216 11 1 3.3520 -3.2424 -5.5989 12 6 4.8444 -4.6282 -6.2651 13 7 5.8990 -5.3399 -5.9274 14 14 4.1916 -4.6981 -8.0139 15 1 3.0055 -3.8127 -8.1353 16 1 5.2466 -4.2431 -8.9548 17 1 3.8039 -6.0935 -8.3422 18 6 3.4632 -1.2499 0.6876 19 6 2.0789 -0.7955 1.2139 20 1 1.4450 -1.6536 1.4375 21 7 2.2218 0.0719 2.3907 22 6 2.1559 -0.7103 3.6323 23 6 2.3076 0.2254 4.8333 24 7 2.2411 -0.5547 6.0716 25 6 3.1674 -0.5667 7.0529 26 6 2.7344 -1.4102 8.0184 27 6 1.5011 -1.9311 7.6135 28 7 1.2016 -1.4144 6.4494 29 1 -0.3634 -1.0271 0.0321 30 1 -0.3633 0.5414 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 1.3129 -1.4758 -1.5775 33 1 2.3715 -0.1026 -1.9988 34 1 2.6443 -3.0044 -3.0235 35 1 3.7054 -1.6475 -3.4721 36 1 6.3373 -5.9004 -6.5867 37 1 3.7959 -2.1427 1.2170 38 1 4.1946 -0.4493 0.7985 39 1 3.0767 0.6058 2.3447 40 1 1.1946 -1.2211 3.6893 41 1 2.9596 -1.4465 3.6412 42 1 3.2685 0.7366 4.7766 43 1 1.5036 0.9613 4.8244 44 1 4.0892 -0.0042 7.0655 45 1 3.2497 -1.6400 8.9393 46 1 0.8978 -2.6344 8.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214173902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:32 Heat of formation + Delta-G solvation = 22.878248 kcal Electronic energy + Delta-G solvation = -25824.777592 eV Core-core repulsion = 22069.331414 eV Total energy + Delta-G solvation = -3755.446177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99469 -41.27513 -39.24687 -36.86902 -34.61453 -34.35107 -33.26898 -31.60995 -31.00178 -29.66541 -27.81865 -27.46445 -27.19066 -24.26638 -23.26612 -21.93485 -21.71160 -21.15520 -20.79396 -19.62889 -18.28158 -17.98165 -17.59057 -17.21387 -16.90787 -16.50749 -16.12275 -15.68175 -15.66664 -15.45925 -15.10864 -14.75323 -14.62604 -14.35528 -14.30025 -14.11384 -13.93340 -13.61258 -13.54475 -13.32223 -13.20210 -13.05975 -13.03118 -12.92594 -12.62613 -12.49268 -12.11467 -11.91741 -11.75112 -11.64695 -11.53660 -11.18075 -11.04417 -10.37441 -10.31931 -9.84461 -9.57173 -9.49658 -8.71604 -8.37221 -6.16426 0.99930 1.19933 1.40373 1.42248 1.48115 1.55034 1.60080 1.97165 2.00683 2.24651 2.96324 2.97131 3.20291 3.42181 3.46654 3.63854 3.82627 3.87076 3.99574 4.08104 4.13163 4.14054 4.20806 4.27408 4.32157 4.39933 4.47603 4.56342 4.65373 4.66648 4.70343 4.81906 4.87083 4.88579 4.94687 5.09569 5.17134 5.20178 5.29872 5.39636 5.45119 5.72678 5.80498 6.15817 6.17611 6.27807 6.30682 6.78650 7.02690 7.04044 8.72411 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021538 B = 0.001845 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.721405 B =15173.150705 C =15977.227279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 H 0.106 0.894 4 C 0.092 3.908 5 N -0.614 5.614 6 C 0.545 3.455 7 O -0.568 6.568 8 C -0.119 4.119 9 S -0.152 6.152 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 1.001 2.999 15 H -0.256 1.256 16 H -0.273 1.273 17 H -0.274 1.274 18 C 0.079 3.921 19 C 0.094 3.906 20 H 0.086 0.914 21 N -0.654 5.654 22 C 0.056 3.944 23 C 0.137 3.863 24 N -0.380 5.380 25 C 0.053 3.947 26 C -0.290 4.290 27 C 0.032 3.968 28 N -0.339 5.339 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.272 0.728 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.356 0.644 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.207 0.793 45 H 0.165 0.835 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.766 17.587 23.752 31.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.095 4.095 3 H 0.125 0.875 4 C -0.030 4.030 5 N -0.349 5.349 6 C 0.334 3.666 7 O -0.447 6.447 8 C -0.270 4.270 9 S 0.075 5.925 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.179 1.179 16 H -0.198 1.198 17 H -0.199 1.199 18 C -0.046 4.046 19 C -0.018 4.018 20 H 0.104 0.896 21 N -0.286 5.286 22 C -0.074 4.074 23 C 0.016 3.984 24 N -0.163 5.163 25 C -0.093 4.093 26 C -0.320 4.320 27 C -0.154 4.154 28 N -0.161 5.161 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.177 0.823 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.144 0.856 43 H 0.116 0.884 44 H 0.223 0.777 45 H 0.182 0.818 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -11.727 16.905 23.342 31.115 hybrid contribution 0.540 -0.554 -0.853 1.151 sum -11.187 16.351 22.489 29.971 Atomic orbital electron populations 1.21666 0.92295 1.02010 1.03073 1.22151 0.97380 0.99536 0.90387 0.87550 1.22528 0.86607 0.95105 0.98750 1.48283 1.30923 1.44449 1.11220 1.19832 0.81443 0.77808 0.87563 1.90685 1.30426 1.49543 1.74044 1.23295 1.04554 1.04639 0.94537 1.85593 1.40380 1.56650 1.09860 1.23221 1.18088 1.32670 0.95320 0.89837 1.26157 0.94760 0.93836 1.04439 1.70193 1.20637 1.27261 1.36707 0.84878 0.78570 0.78487 0.75838 1.17925 1.19823 1.19915 1.23097 0.99721 1.00698 0.81100 1.22728 0.93117 0.95294 0.90613 0.89590 1.60440 1.43890 1.24771 0.99486 1.22071 1.01412 0.94979 0.88956 1.21740 1.05949 0.92106 0.78649 1.48856 1.15177 1.35347 1.16929 1.23228 0.96470 1.00595 0.89022 1.21892 0.99482 1.06351 1.04227 1.24381 0.97515 1.00023 0.93459 1.77305 1.11973 1.09961 1.16896 0.93233 0.91059 0.91244 0.90588 0.89841 0.87629 0.87361 0.91945 0.92950 0.90214 0.82313 0.91245 0.95671 0.85611 0.88441 0.77652 0.81776 0.78403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.13 71.98 0.66 -0.87 16 2 C -0.08 -1.00 3.25 -9.60 -0.03 -1.03 16 3 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.09 1.77 6.08 86.73 0.53 2.30 16 5 N -0.61 -17.14 3.33 -811.79 -2.70 -19.84 16 6 C 0.55 21.53 7.87 87.66 0.69 22.22 16 7 O -0.57 -27.79 16.12 -3.02 -0.05 -27.84 16 8 C -0.12 -4.93 5.35 71.24 0.38 -4.55 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.55 -31.41 9.50 67.95 0.65 -30.77 16 11 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 12 C 0.01 0.73 5.49 84.86 0.47 1.20 16 13 N -0.91 -56.36 13.22 21.65 0.29 -56.07 16 14 Si 1.00 43.70 29.55 68.60 2.03 45.73 16 15 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 C 0.08 1.76 6.50 86.86 0.56 2.32 16 19 C 0.09 1.45 2.83 46.31 0.13 1.59 16 20 H 0.09 1.56 7.72 -2.39 -0.02 1.54 16 21 N -0.65 -7.15 6.41 -484.40 -3.11 -10.26 16 22 C 0.06 0.74 5.74 86.30 0.50 1.24 16 23 C 0.14 1.33 6.77 86.38 0.58 1.92 16 24 N -0.38 -5.81 3.68 -348.06 -1.28 -7.09 16 25 C 0.05 0.63 11.45 83.54 0.96 1.58 16 26 C -0.29 -3.86 10.80 21.99 0.24 -3.62 16 27 C 0.03 0.52 12.03 85.24 1.02 1.54 16 28 N -0.34 -6.98 12.42 -57.03 -0.71 -7.69 16 29 H 0.05 0.65 8.13 -2.39 -0.02 0.63 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.44 7.82 -2.39 -0.02 1.42 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.11 3.99 8.14 -2.39 -0.02 3.98 16 35 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.05 1.43 8.04 -2.39 -0.02 1.41 16 38 H 0.08 1.57 7.75 -2.39 -0.02 1.55 16 39 H 0.36 2.73 8.19 -89.70 -0.73 1.99 16 40 H 0.07 1.24 8.09 -2.38 -0.02 1.22 16 41 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.13 0.44 8.07 -2.39 -0.02 0.42 16 43 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.21 0.79 8.06 -2.91 -0.02 0.76 16 45 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.20 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -83.11 398.64 0.87 -82.24 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.23 Total: 15.54 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 7.33 Total: -4.94 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -7.51 Total: -100.95 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.05 Total: -27.84 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -83.11 0.87 -82.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214173902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.115 kcal (2) G-P(sol) polarization free energy of solvation -83.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds