Wall clock time and date at job start Tue Mar 31 2020 20:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46066 * 2 1 4 4 C 1.53043 * 109.46140 * 240.04161 * 2 1 3 5 5 C 1.53197 * 109.31256 * 178.61398 * 4 2 1 6 6 N 1.46957 * 108.88843 * 54.55735 * 5 4 2 7 7 C 1.34773 * 120.65411 * 126.46305 * 6 5 4 8 8 O 1.21553 * 120.00204 * 186.64489 * 7 6 5 9 9 C 1.47858 * 120.00114 * 6.65149 * 7 6 5 10 10 C 1.39546 * 120.12148 * 37.15916 * 9 7 6 11 11 C 1.38206 * 119.87817 * 179.81668 * 10 9 7 12 12 F 1.35095 * 119.94149 * 180.23821 * 11 10 9 13 13 C 1.38528 * 120.11980 * 0.44643 * 11 10 9 14 14 C 1.38530 * 120.24389 * 359.78994 * 13 11 10 15 15 F 1.35104 * 119.94079 * 179.97438 * 14 13 11 16 16 C 1.38210 * 120.12409 * 359.97438 * 14 13 11 17 17 C 1.46928 * 118.71586 * 306.64396 * 6 5 4 18 18 H 1.09002 * 109.58502 * 293.50071 * 17 6 5 19 19 C 1.53001 * 109.58684 * 173.22061 * 17 6 5 20 20 N 1.46496 * 109.47034 * 69.49467 * 19 17 6 21 21 C 1.36945 * 119.99534 * 175.06690 * 20 19 17 22 22 H 1.08002 * 120.00105 * 0.27351 * 21 20 19 23 23 C 1.38815 * 119.99501 * 180.27703 * 21 20 19 24 24 N 1.31616 * 120.00182 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99635 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47541 * 59.99685 * 25 23 21 27 27 H 1.48501 * 109.47407 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47319 * 299.99906 * 25 23 21 29 29 C 1.53042 * 109.46182 * 119.97088 * 2 1 3 30 30 H 1.09000 * 109.47503 * 300.02139 * 1 2 3 31 31 H 1.08997 * 109.47533 * 60.03100 * 1 2 3 32 32 H 1.09008 * 109.47148 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49684 * 298.56358 * 4 2 1 34 34 H 1.08999 * 109.49477 * 58.62872 * 4 2 1 35 35 H 1.08996 * 109.58632 * 174.42672 * 5 4 2 36 36 H 1.09001 * 109.58254 * 294.70020 * 5 4 2 37 37 H 1.08001 * 120.06411 * 0.02562 * 10 9 7 38 38 H 1.07996 * 119.88216 * 179.76488 * 13 11 10 39 39 H 1.07992 * 120.06376 * 179.97438 * 16 14 13 40 40 H 1.09003 * 109.46941 * 309.49271 * 19 17 6 41 41 H 1.09003 * 109.46738 * 189.49751 * 19 17 6 42 42 H 0.96991 * 120.00681 * 355.34495 * 20 19 17 43 43 H 0.97003 * 119.99629 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.49472 * 61.43980 * 29 2 1 45 45 H 1.08999 * 109.49938 * 301.34199 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5714 -0.6884 -1.2643 6 7 4.0707 -1.2467 0.0000 7 6 4.9665 -2.2537 0.0003 8 8 5.2805 -2.7876 1.0462 9 6 5.5674 -2.7089 -1.2717 10 6 5.8806 -1.7842 -2.2687 11 6 6.4457 -2.2148 -3.4542 12 9 6.7538 -1.3202 -4.4184 13 6 6.6927 -3.5627 -3.6573 14 6 6.3792 -4.4856 -2.6728 15 9 6.6222 -5.7987 -2.8776 16 6 5.8183 -4.0655 -1.4816 17 6 3.5713 -0.6887 1.2642 18 1 3.9142 0.3406 1.3699 19 6 4.0912 -1.5253 2.4350 20 7 5.5352 -1.3230 2.5765 21 6 6.2070 -1.8934 3.6247 22 1 5.6730 -2.4960 4.3445 23 6 7.5743 -1.6969 3.7620 24 7 8.2251 -0.9629 2.8845 25 14 8.4907 -2.4755 5.1914 26 1 8.3451 -3.9519 5.1276 27 1 9.9295 -2.1167 5.1113 28 1 7.9264 -1.9774 6.4715 29 6 2.0398 -0.7209 1.2500 30 1 -0.3634 0.5142 0.8898 31 1 -0.3634 0.5133 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7555 -1.2385 34 1 1.6567 -0.2208 -2.1398 35 1 3.9417 -1.2841 -2.0986 36 1 3.9142 0.3409 -1.3699 37 1 5.6849 -0.7335 -2.1130 38 1 7.1308 -3.8954 -4.5866 39 1 5.5739 -4.7858 -0.7150 40 1 3.8888 -2.5796 2.2463 41 1 3.5895 -1.2175 3.3524 42 1 6.0148 -0.7817 1.9301 43 1 9.1806 -0.8259 2.9804 44 1 1.6979 -1.7557 1.2381 45 1 1.6572 -0.2210 2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264006839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:29 Heat of formation + Delta-G solvation = -45.217336 kcal Electronic energy + Delta-G solvation = -30603.795652 eV Core-core repulsion = 26259.263491 eV Total energy + Delta-G solvation = -4344.532161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.09367 -49.05152 -40.59336 -38.53757 -37.20293 -34.55507 -33.83674 -32.26417 -30.84832 -30.40693 -29.83547 -28.27700 -25.52008 -24.44722 -23.48097 -22.78547 -22.56247 -21.45011 -20.11598 -19.49540 -17.88337 -17.23783 -16.86107 -16.58762 -16.13674 -16.02652 -15.78920 -15.41326 -15.37525 -14.94638 -14.59966 -14.49867 -14.30186 -14.06372 -13.68790 -13.56511 -13.28871 -12.93852 -12.83082 -12.65883 -12.25320 -12.05716 -11.98077 -11.91714 -11.82641 -11.68277 -11.54659 -11.04858 -10.90475 -10.74976 -10.70833 -10.44675 -10.29771 -9.91596 -9.55165 -9.13078 -8.82049 -8.80304 -8.46395 -8.16140 -6.58610 -5.61011 -2.79088 0.65204 0.88904 2.91983 3.18800 3.52457 3.57311 3.58510 3.60393 3.80231 4.33630 4.43368 4.64312 4.66909 4.69853 4.76608 4.80471 4.86549 5.00954 5.11764 5.25624 5.39360 5.45160 5.52554 5.55727 5.66515 5.66902 5.71587 5.74892 5.75882 5.81506 5.87138 5.90645 6.01016 6.04510 6.08371 6.10868 6.14320 6.36775 6.49448 6.58869 6.65047 6.88108 7.22617 7.81220 7.83117 8.57086 8.75480 9.68273 10.26908 10.60972 11.62439 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007331 B = 0.005351 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.291401 B = 5231.068569 C = 7921.886949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.128 4.128 5 C 0.098 3.902 6 N -0.608 5.608 7 C 0.512 3.488 8 O -0.427 6.427 9 C -0.046 4.046 10 C -0.142 4.142 11 C 0.123 3.877 12 F -0.131 7.131 13 C -0.185 4.185 14 C 0.126 3.874 15 F -0.131 7.131 16 C -0.116 4.116 17 C 0.144 3.856 18 H 0.071 0.929 19 C 0.157 3.843 20 N -0.694 5.694 21 C -0.210 4.210 22 H 0.066 0.934 23 C -0.020 4.020 24 N -0.936 5.936 25 Si 0.903 3.097 26 H -0.288 1.288 27 H -0.293 1.293 28 H -0.289 1.289 29 C -0.121 4.121 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.045 0.955 41 H 0.017 0.983 42 H 0.379 0.621 43 H 0.252 0.748 44 H 0.067 0.933 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 0.227 -15.418 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.089 0.911 4 C -0.166 4.166 5 C -0.025 4.025 6 N -0.346 5.346 7 C 0.297 3.703 8 O -0.295 6.295 9 C -0.050 4.050 10 C -0.161 4.161 11 C 0.103 3.897 12 F -0.110 7.110 13 C -0.205 4.205 14 C 0.106 3.894 15 F -0.109 7.109 16 C -0.136 4.136 17 C 0.041 3.959 18 H 0.089 0.911 19 C 0.029 3.971 20 N -0.337 5.337 21 C -0.341 4.341 22 H 0.084 0.916 23 C -0.215 4.215 24 N -0.585 5.585 25 Si 0.735 3.265 26 H -0.215 1.215 27 H -0.219 1.219 28 H -0.216 1.216 29 C -0.160 4.160 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.062 0.938 41 H 0.035 0.965 42 H 0.213 0.787 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.983 -0.204 -14.661 19.584 hybrid contribution 1.011 -0.236 0.134 1.047 sum -11.972 -0.440 -14.526 18.829 Atomic orbital electron populations 1.21813 0.95243 1.01703 1.01469 1.21121 0.95420 0.99639 0.94913 0.91065 1.21988 0.95320 1.01333 0.98006 1.22027 0.94175 0.99233 0.87084 1.47666 1.44211 1.36383 1.06334 1.17964 0.81448 0.82988 0.87908 1.91214 1.57393 1.51904 1.28940 1.19853 0.98189 0.92601 0.94405 1.21536 1.00897 1.01714 0.91970 1.17087 0.99656 0.86085 0.86824 1.91531 1.90823 1.66911 1.61726 1.21048 1.06282 0.91684 1.01487 1.17090 0.99867 0.78033 0.94389 1.91536 1.92114 1.32058 1.95207 1.21229 0.99651 0.96325 0.96377 1.21527 0.92599 0.98025 0.83740 0.91138 1.20976 0.86764 0.97404 0.91940 1.42288 1.01836 1.59144 1.30391 1.19130 0.90645 1.23059 1.01305 0.91590 1.24635 0.96481 1.01383 0.98996 1.69640 1.07986 1.43915 1.36995 0.86302 0.78934 0.78998 0.82221 1.21538 1.21925 1.21560 1.21971 0.95073 1.01258 0.97679 0.92664 0.92912 0.92792 0.91523 0.91089 0.89311 0.91637 0.83216 0.83453 0.83193 0.93798 0.96544 0.78709 0.93843 0.91448 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.15 0.34 -0.84 16 2 C -0.09 -0.89 2.68 -90.58 -0.24 -1.13 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.13 -1.18 5.36 -26.61 -0.14 -1.33 16 5 C 0.10 1.07 4.80 -3.69 -0.02 1.05 16 6 N -0.61 -9.13 2.98 -166.29 -0.50 -9.63 16 7 C 0.51 9.26 6.74 -12.33 -0.08 9.18 16 8 O -0.43 -9.81 10.71 5.32 0.06 -9.76 16 9 C -0.05 -0.71 5.21 -104.98 -0.55 -1.26 16 10 C -0.14 -1.86 7.35 -39.11 -0.29 -2.15 16 11 C 0.12 1.51 7.29 -39.49 -0.29 1.22 16 12 F -0.13 -1.58 17.26 2.25 0.04 -1.55 16 13 C -0.18 -2.17 10.00 -39.37 -0.39 -2.56 16 14 C 0.13 1.65 7.29 -39.48 -0.29 1.37 16 15 F -0.13 -1.73 17.26 2.25 0.04 -1.69 16 16 C -0.12 -1.71 9.60 -39.10 -0.38 -2.08 16 17 C 0.14 2.28 2.92 -67.60 -0.20 2.08 16 18 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.16 3.24 4.87 -4.04 -0.02 3.22 16 20 N -0.69 -18.00 3.24 -59.90 -0.19 -18.20 16 21 C -0.21 -6.09 9.72 -15.05 -0.15 -6.23 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.02 -0.60 5.50 -17.43 -0.10 -0.69 16 24 N -0.94 -29.24 13.06 55.49 0.72 -28.52 16 25 Si 0.90 23.47 29.55 -169.99 -5.02 18.45 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 C -0.12 -1.46 4.64 -26.61 -0.12 -1.59 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.91 4.65 -51.93 -0.24 0.66 16 36 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 37 H 0.15 1.80 6.29 -52.49 -0.33 1.47 16 38 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.15 2.25 8.03 -52.49 -0.42 1.82 16 40 H 0.04 0.98 6.28 -51.93 -0.33 0.66 16 41 H 0.02 0.35 8.13 -51.93 -0.42 -0.08 16 42 H 0.38 10.47 7.09 -40.82 -0.29 10.19 16 43 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 364.55 15.07 5.49 5.49 Total: -1.00 -32.95 364.55 -8.49 -41.44 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -6.22 Total: 5.70 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.91 Total: -1.75 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.04 Total: -56.35 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.06 Total: -9.76 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -5.02 Total: 18.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.95 -8.49 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264006839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.776 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds