Wall clock time and date at job start Tue Mar 31 2020 20:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46066 * 2 1 4 4 C 1.53043 * 109.46140 * 240.04161 * 2 1 3 5 5 C 1.53197 * 109.31256 * 178.61398 * 4 2 1 6 6 N 1.46957 * 108.88843 * 54.55735 * 5 4 2 7 7 C 1.34773 * 120.65411 * 126.46305 * 6 5 4 8 8 O 1.21553 * 120.00204 * 186.64489 * 7 6 5 9 9 C 1.47858 * 120.00114 * 6.65149 * 7 6 5 10 10 C 1.39546 * 120.12148 * 37.15916 * 9 7 6 11 11 C 1.38206 * 119.87817 * 179.81668 * 10 9 7 12 12 F 1.35095 * 119.94149 * 180.23821 * 11 10 9 13 13 C 1.38528 * 120.11980 * 0.44643 * 11 10 9 14 14 C 1.38530 * 120.24389 * 359.78994 * 13 11 10 15 15 F 1.35104 * 119.94079 * 179.97438 * 14 13 11 16 16 C 1.38210 * 120.12409 * 359.97438 * 14 13 11 17 17 C 1.46928 * 118.71586 * 306.64396 * 6 5 4 18 18 H 1.09002 * 109.58502 * 293.50071 * 17 6 5 19 19 C 1.53001 * 109.58684 * 173.22061 * 17 6 5 20 20 N 1.46496 * 109.47034 * 69.49467 * 19 17 6 21 21 C 1.36945 * 119.99534 * 175.06690 * 20 19 17 22 22 H 1.08002 * 120.00105 * 0.27351 * 21 20 19 23 23 C 1.38815 * 119.99501 * 180.27703 * 21 20 19 24 24 N 1.31616 * 120.00182 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99635 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47541 * 59.99685 * 25 23 21 27 27 H 1.48501 * 109.47407 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47319 * 299.99906 * 25 23 21 29 29 C 1.53042 * 109.46182 * 119.97088 * 2 1 3 30 30 H 1.09000 * 109.47503 * 300.02139 * 1 2 3 31 31 H 1.08997 * 109.47533 * 60.03100 * 1 2 3 32 32 H 1.09008 * 109.47148 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49684 * 298.56358 * 4 2 1 34 34 H 1.08999 * 109.49477 * 58.62872 * 4 2 1 35 35 H 1.08996 * 109.58632 * 174.42672 * 5 4 2 36 36 H 1.09001 * 109.58254 * 294.70020 * 5 4 2 37 37 H 1.08001 * 120.06411 * 0.02562 * 10 9 7 38 38 H 1.07996 * 119.88216 * 179.76488 * 13 11 10 39 39 H 1.07992 * 120.06376 * 179.97438 * 16 14 13 40 40 H 1.09003 * 109.46941 * 309.49271 * 19 17 6 41 41 H 1.09003 * 109.46738 * 189.49751 * 19 17 6 42 42 H 0.96991 * 120.00681 * 355.34495 * 20 19 17 43 43 H 0.97003 * 119.99629 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.49472 * 61.43980 * 29 2 1 45 45 H 1.08999 * 109.49938 * 301.34199 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5714 -0.6884 -1.2643 6 7 4.0707 -1.2467 0.0000 7 6 4.9665 -2.2537 0.0003 8 8 5.2805 -2.7876 1.0462 9 6 5.5674 -2.7089 -1.2717 10 6 5.8806 -1.7842 -2.2687 11 6 6.4457 -2.2148 -3.4542 12 9 6.7538 -1.3202 -4.4184 13 6 6.6927 -3.5627 -3.6573 14 6 6.3792 -4.4856 -2.6728 15 9 6.6222 -5.7987 -2.8776 16 6 5.8183 -4.0655 -1.4816 17 6 3.5713 -0.6887 1.2642 18 1 3.9142 0.3406 1.3699 19 6 4.0912 -1.5253 2.4350 20 7 5.5352 -1.3230 2.5765 21 6 6.2070 -1.8934 3.6247 22 1 5.6730 -2.4960 4.3445 23 6 7.5743 -1.6969 3.7620 24 7 8.2251 -0.9629 2.8845 25 14 8.4907 -2.4755 5.1914 26 1 8.3451 -3.9519 5.1276 27 1 9.9295 -2.1167 5.1113 28 1 7.9264 -1.9774 6.4715 29 6 2.0398 -0.7209 1.2500 30 1 -0.3634 0.5142 0.8898 31 1 -0.3634 0.5133 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6978 -1.7555 -1.2385 34 1 1.6567 -0.2208 -2.1398 35 1 3.9417 -1.2841 -2.0986 36 1 3.9142 0.3409 -1.3699 37 1 5.6849 -0.7335 -2.1130 38 1 7.1308 -3.8954 -4.5866 39 1 5.5739 -4.7858 -0.7150 40 1 3.8888 -2.5796 2.2463 41 1 3.5895 -1.2175 3.3524 42 1 6.0148 -0.7817 1.9301 43 1 9.1806 -0.8259 2.9804 44 1 1.6979 -1.7557 1.2381 45 1 1.6572 -0.2210 2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264006839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:28 Heat of formation + Delta-G solvation = -64.377858 kcal Electronic energy + Delta-G solvation = -30604.626515 eV Core-core repulsion = 26259.263491 eV Total energy + Delta-G solvation = -4345.363024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.12435 -50.08208 -41.86813 -39.64662 -38.42332 -36.35199 -34.93703 -33.93513 -32.08034 -31.69006 -31.26895 -29.27316 -27.15260 -25.66456 -24.52990 -24.39054 -23.71404 -22.78563 -21.20667 -20.59868 -19.34139 -18.64544 -18.30850 -17.65888 -17.29514 -17.11930 -16.94811 -16.74575 -16.48776 -16.40022 -15.95735 -15.54673 -15.44419 -15.39466 -15.05561 -14.86423 -14.58668 -14.54188 -13.97665 -13.92477 -13.60470 -13.23007 -13.07686 -13.02925 -12.94192 -12.78561 -12.73329 -12.62278 -12.54160 -12.16756 -12.06852 -11.84813 -11.67244 -11.29714 -11.19212 -10.89729 -10.29428 -9.96453 -9.86160 -9.51539 -8.65188 -7.84907 -5.03801 -0.44507 -0.19893 1.43294 1.47482 1.52836 1.71804 1.95748 2.35943 2.61321 2.72410 3.23897 3.32952 3.49271 3.61868 3.73309 3.79508 3.81252 3.90011 3.94240 4.09015 4.28869 4.32853 4.39280 4.48615 4.53888 4.59808 4.66316 4.77286 4.81622 4.82170 4.86639 4.93692 4.95504 4.96686 5.04702 5.14158 5.14713 5.25457 5.35921 5.44965 5.52841 5.55961 5.59194 5.80212 6.36514 6.52759 7.37450 7.43974 8.22145 8.44923 9.39485 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007331 B = 0.005351 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3818.291401 B = 5231.068569 C = 7921.886949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.122 4.122 5 C 0.090 3.910 6 N -0.602 5.602 7 C 0.517 3.483 8 O -0.493 6.493 9 C -0.066 4.066 10 C -0.132 4.132 11 C 0.129 3.871 12 F -0.124 7.124 13 C -0.163 4.163 14 C 0.124 3.876 15 F -0.130 7.130 16 C -0.126 4.126 17 C 0.149 3.851 18 H 0.067 0.933 19 C 0.160 3.840 20 N -0.705 5.705 21 C -0.212 4.212 22 H 0.062 0.938 23 C -0.082 4.082 24 N -0.972 5.972 25 Si 0.965 3.035 26 H -0.288 1.288 27 H -0.295 1.295 28 H -0.277 1.277 29 C -0.112 4.112 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.136 0.864 40 H 0.026 0.974 41 H 0.015 0.985 42 H 0.367 0.633 43 H 0.245 0.755 44 H 0.060 0.940 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 0.986 -18.016 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.031 4.031 6 N -0.338 5.338 7 C 0.303 3.697 8 O -0.366 6.366 9 C -0.070 4.070 10 C -0.151 4.151 11 C 0.110 3.890 12 F -0.102 7.102 13 C -0.182 4.182 14 C 0.105 3.895 15 F -0.109 7.109 16 C -0.146 4.146 17 C 0.046 3.954 18 H 0.085 0.915 19 C 0.033 3.967 20 N -0.345 5.345 21 C -0.345 4.345 22 H 0.080 0.920 23 C -0.273 4.273 24 N -0.625 5.625 25 Si 0.795 3.205 26 H -0.215 1.215 27 H -0.222 1.222 28 H -0.204 1.204 29 C -0.151 4.151 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.180 0.820 38 H 0.197 0.803 39 H 0.154 0.846 40 H 0.044 0.956 41 H 0.033 0.967 42 H 0.199 0.801 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.440 0.568 -17.307 22.547 hybrid contribution 1.324 -0.528 0.730 1.601 sum -13.116 0.040 -16.577 21.138 Atomic orbital electron populations 1.21764 0.93633 1.01920 1.02439 1.21110 0.96650 0.99471 0.93437 0.90414 1.21978 0.93543 1.01425 0.99068 1.22376 0.95706 0.99948 0.85101 1.47830 1.42976 1.35240 1.07744 1.18506 0.80754 0.82286 0.88179 1.91195 1.59543 1.54596 1.31220 1.19628 1.00066 0.93290 0.94022 1.21587 1.00105 1.01856 0.91594 1.16990 0.99186 0.86367 0.86499 1.91560 1.90660 1.66721 1.61289 1.21325 1.04053 0.90992 1.01843 1.17039 0.99985 0.78356 0.94142 1.91540 1.92104 1.32106 1.95136 1.21207 1.00253 0.96095 0.96996 1.21402 0.95054 0.96442 0.82494 0.91495 1.20985 0.84361 0.97272 0.94069 1.42294 1.03558 1.59150 1.29536 1.19431 0.91171 1.22138 1.01712 0.92029 1.25342 0.97327 1.02870 1.01800 1.69797 1.07560 1.46158 1.39020 0.85318 0.77405 0.77908 0.79842 1.21550 1.22167 1.20352 1.21917 0.91796 1.01521 0.99859 0.92470 0.91234 0.92965 0.92081 0.88002 0.88301 0.89968 0.81966 0.80325 0.84610 0.95649 0.96740 0.80119 0.94639 0.92135 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.19 71.98 0.66 -1.18 16 2 C -0.09 -1.46 2.68 -10.77 -0.03 -1.49 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.12 -1.87 5.36 30.67 0.16 -1.70 16 5 C 0.09 1.76 4.80 86.36 0.41 2.17 16 6 N -0.60 -18.00 2.98 -798.31 -2.38 -20.38 16 7 C 0.52 19.29 6.74 86.79 0.59 19.88 16 8 O -0.49 -24.05 10.71 -3.88 -0.04 -24.09 16 9 C -0.07 -2.04 5.21 -20.10 -0.10 -2.15 16 10 C -0.13 -3.25 7.35 22.58 0.17 -3.08 16 11 C 0.13 2.79 7.29 22.33 0.16 2.95 16 12 F -0.12 -2.54 17.26 44.97 0.78 -1.77 16 13 C -0.16 -3.32 10.00 22.41 0.22 -3.09 16 14 C 0.12 3.10 7.29 22.33 0.16 3.26 16 15 F -0.13 -3.28 17.26 44.97 0.78 -2.50 16 16 C -0.13 -3.75 9.60 22.58 0.22 -3.53 16 17 C 0.15 4.77 2.92 44.97 0.13 4.90 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 19 C 0.16 6.92 4.87 86.38 0.42 7.34 16 20 N -0.70 -38.32 3.24 -343.44 -1.11 -39.43 16 21 C -0.21 -12.82 9.72 84.03 0.82 -12.00 16 22 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 23 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 24 N -0.97 -63.05 13.06 21.65 0.28 -62.77 16 25 Si 0.96 49.86 29.55 68.60 2.03 51.89 16 26 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 27 H -0.30 -15.22 7.11 99.48 0.71 -14.51 16 28 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 29 C -0.11 -2.60 4.64 30.67 0.14 -2.46 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.71 8.14 -2.38 -0.02 0.70 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.76 4.65 -2.39 -0.01 1.75 16 36 H 0.08 1.40 8.06 -2.39 -0.02 1.38 16 37 H 0.16 3.53 6.29 -2.91 -0.02 3.51 16 38 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.14 4.36 8.03 -2.91 -0.02 4.34 16 40 H 0.03 1.22 6.28 -2.39 -0.01 1.20 16 41 H 0.01 0.64 8.13 -2.39 -0.02 0.62 16 42 H 0.37 21.27 7.09 -92.71 -0.66 20.61 16 43 H 0.24 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -75.49 364.55 5.30 -70.19 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.36 Total: 23.65 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 4.60 Total: 5.21 kcal Atomic # 7 Polarization: -119.37 SS G_CDS: -3.21 Total: -122.58 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 1.55 Total: -4.27 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.03 Total: 51.89 kcal Total: -75.49 5.30 -70.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264006839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.812 kcal (2) G-P(sol) polarization free energy of solvation -75.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds