Wall clock time and date at job start Tue Mar 31 2020 21:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46953 * 2 1 4 4 C 1.50695 * 109.47303 * 120.00463 * 2 1 3 5 5 O 1.21286 * 120.00179 * 119.99879 * 4 2 1 6 6 N 1.34769 * 119.99904 * 300.00300 * 4 2 1 7 7 C 1.46496 * 120.00379 * 359.97438 * 6 4 2 8 8 C 1.46503 * 120.00022 * 179.97438 * 6 4 2 9 9 C 1.53003 * 109.47102 * 83.90571 * 8 6 4 10 10 H 1.08998 * 112.96417 * 308.67646 * 9 8 6 11 11 C 1.53945 * 113.77063 * 176.99962 * 9 8 6 12 12 C 1.53942 * 86.29222 * 222.09323 * 11 9 8 13 13 N 1.47580 * 113.76895 * 80.35947 * 9 8 6 14 14 C 1.36932 * 134.49310 * 318.92905 * 13 9 8 15 15 H 1.08004 * 119.99673 * 335.42056 * 14 13 9 16 16 C 1.38811 * 120.00317 * 155.42056 * 14 13 9 17 17 N 1.31616 * 120.00054 * 169.85874 * 16 14 13 18 18 Si 1.86799 * 119.99669 * 349.85615 * 16 14 13 19 19 H 1.48493 * 109.47330 * 84.39913 * 18 16 14 20 20 H 1.48503 * 109.46868 * 204.40212 * 18 16 14 21 21 H 1.48499 * 109.47211 * 324.39782 * 18 16 14 22 22 C 1.50704 * 109.47313 * 240.00733 * 2 1 3 23 23 C 1.38234 * 119.98779 * 300.25562 * 22 2 1 24 24 C 1.38177 * 120.05203 * 180.25286 * 23 22 2 25 25 C 1.38501 * 120.02650 * 359.48812 * 24 23 22 26 26 F 1.35098 * 120.01352 * 180.22649 * 25 24 23 27 27 C 1.38397 * 119.97001 * 0.25649 * 25 24 23 28 28 C 1.38441 * 119.95428 * 359.97438 * 27 25 24 29 29 F 1.35094 * 120.01386 * 179.97438 * 28 27 25 30 30 H 1.09004 * 109.46741 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47029 * 299.99593 * 1 2 3 32 32 H 1.09000 * 109.47032 * 59.99457 * 1 2 3 33 33 H 1.09006 * 109.47073 * 85.48414 * 7 6 4 34 34 H 1.09000 * 109.47794 * 205.48205 * 7 6 4 35 35 H 1.09003 * 109.46993 * 325.48680 * 7 6 4 36 36 H 1.09000 * 109.47307 * 203.90671 * 8 6 4 37 37 H 1.08995 * 109.47218 * 323.90734 * 8 6 4 38 38 H 1.09004 * 113.74219 * 336.44222 * 11 9 8 39 39 H 1.09002 * 113.73769 * 107.63514 * 11 9 8 40 40 H 1.08990 * 113.77210 * 137.90834 * 12 11 9 41 41 H 1.09005 * 113.76463 * 269.19247 * 12 11 9 42 42 H 0.97004 * 119.99962 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.97351 * 359.97438 * 23 22 2 44 44 H 1.08002 * 119.98964 * 179.76112 * 24 23 22 45 45 H 1.08005 * 120.02043 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4544 7 6 0.8650 0.9412 2.5890 8 6 2.1947 -0.9412 3.6506 9 6 3.6082 -0.4561 3.9789 10 1 4.2836 -0.5046 3.1247 11 6 4.1907 -1.0675 5.2660 12 6 4.7196 0.3441 5.5781 13 7 3.6431 0.8353 4.6923 14 6 2.9544 2.0133 4.5788 15 1 2.5007 2.2849 3.6371 16 6 2.8394 2.8585 5.6739 17 7 2.3559 4.0729 5.5201 18 14 3.3708 2.2721 7.3660 19 1 4.8329 2.4777 7.5246 20 1 2.6465 3.0441 8.4075 21 1 3.0554 0.8282 7.5112 22 6 2.0324 -0.7103 -1.2306 23 6 1.6940 -2.0321 -1.4519 24 6 2.1582 -2.6862 -2.5771 25 6 2.9545 -2.0148 -3.4900 26 9 3.4045 -2.6532 -4.5923 27 6 3.2896 -0.6898 -3.2720 28 6 2.8279 -0.0369 -2.1419 29 9 3.1548 1.2563 -1.9278 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.1848 0.6515 2.5416 34 1 1.0662 1.4221 3.5463 35 1 1.0870 1.6363 1.7793 36 1 1.5328 -0.7265 4.4896 37 1 2.2126 -2.0155 3.4676 38 1 3.4333 -1.4175 5.9675 39 1 4.9755 -1.8024 5.0865 40 1 4.6001 0.6374 6.6210 41 1 5.7231 0.5317 5.1959 42 1 2.2752 4.6634 6.2855 43 1 1.0700 -2.5554 -0.7426 44 1 1.8963 -3.7201 -2.7471 45 1 3.9109 -0.1656 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264380488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:05 Heat of formation + Delta-G solvation = -24.833579 kcal Electronic energy + Delta-G solvation = -30147.332316 eV Core-core repulsion = 25803.684061 eV Total energy + Delta-G solvation = -4343.648255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.17107 -49.10878 -40.32814 -38.85512 -37.97794 -35.11435 -34.12208 -32.38803 -30.97382 -29.70211 -28.73456 -27.83554 -26.42225 -24.65617 -23.49993 -23.25355 -22.94741 -21.56147 -19.32289 -18.76084 -18.39225 -17.57078 -17.19342 -16.46482 -16.35221 -16.06471 -15.73643 -15.54487 -15.40938 -15.35836 -14.99845 -14.62249 -14.39616 -14.05875 -13.59071 -13.49479 -13.26498 -13.07603 -12.91166 -12.51395 -12.46523 -12.29867 -12.04605 -11.86860 -11.66300 -11.54537 -11.32407 -11.30103 -11.14613 -11.00315 -10.85170 -10.45595 -10.34472 -9.69948 -9.41249 -9.38510 -9.19186 -8.74545 -8.71179 -8.19774 -7.03620 -5.99888 -3.36934 0.77590 0.88106 2.87411 3.11828 3.30940 3.40474 3.43141 3.45433 3.70966 4.22120 4.34530 4.39727 4.48950 4.63471 4.65894 4.76900 4.97664 5.06457 5.14734 5.23031 5.34017 5.47479 5.59002 5.63723 5.67107 5.70661 5.74164 5.78331 5.83289 5.83549 5.90248 5.96594 6.01217 6.10537 6.14502 6.18933 6.34956 6.39700 6.43182 6.57952 6.60134 6.86461 7.07760 7.33230 7.77189 8.28075 8.45050 8.61929 9.58733 10.33492 11.16061 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.003067 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.634057 B = 9127.016568 C = 9488.634695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.518 3.482 5 O -0.545 6.545 6 N -0.591 5.591 7 C 0.055 3.945 8 C 0.121 3.879 9 C 0.135 3.865 10 H 0.056 0.944 11 C -0.146 4.146 12 C 0.095 3.905 13 N -0.620 5.620 14 C -0.235 4.235 15 H 0.099 0.901 16 C 0.023 3.977 17 N -0.916 5.916 18 Si 0.897 3.103 19 H -0.288 1.288 20 H -0.304 1.304 21 H -0.271 1.271 22 C -0.102 4.102 23 C -0.028 4.028 24 C -0.164 4.164 25 C 0.125 3.875 26 F -0.135 7.135 27 C -0.195 4.195 28 C 0.136 3.864 29 F -0.127 7.127 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.041 0.959 42 H 0.264 0.736 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.533 -11.693 -13.641 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.095 4.095 3 H 0.129 0.871 4 C 0.305 3.695 5 O -0.423 6.423 6 N -0.322 5.322 7 C -0.087 4.087 8 C -0.002 4.002 9 C 0.028 3.972 10 H 0.074 0.926 11 C -0.185 4.185 12 C -0.029 4.029 13 N -0.348 5.348 14 C -0.361 4.361 15 H 0.116 0.884 16 C -0.175 4.175 17 N -0.560 5.560 18 Si 0.729 3.271 19 H -0.216 1.216 20 H -0.232 1.232 21 H -0.197 1.197 22 C -0.103 4.103 23 C -0.046 4.046 24 C -0.183 4.183 25 C 0.105 3.895 26 F -0.113 7.113 27 C -0.214 4.214 28 C 0.117 3.883 29 F -0.106 7.106 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.325 -11.797 -13.648 18.551 hybrid contribution 0.735 0.247 0.770 1.093 sum -3.590 -11.550 -12.878 17.667 Atomic orbital electron populations 1.22081 0.91599 1.03161 1.04170 1.20195 0.98207 1.00878 0.90242 0.87129 1.20213 0.80458 0.84546 0.84325 1.90671 1.38299 1.26864 1.86486 1.47645 1.50301 1.28976 1.05266 1.22531 0.92534 0.86718 1.06910 1.21818 0.96205 0.95945 0.86244 1.22648 0.94418 0.85832 0.94330 0.92613 1.23568 1.00066 0.96640 0.98252 1.22903 0.92767 0.91521 0.95757 1.46335 1.37827 1.11118 1.39544 1.18767 1.27219 0.93298 0.96826 0.88403 1.25003 0.98781 0.95993 0.97754 1.69733 1.49408 1.06160 1.30715 0.86694 0.77526 0.77959 0.84922 1.21583 1.23249 1.19690 1.19490 0.99732 0.95264 0.95819 1.20659 0.96602 0.92317 0.95004 1.21150 1.00626 1.01442 0.95102 1.17275 0.97210 0.90280 0.84724 1.91515 1.87442 1.81569 1.50814 1.20926 1.06048 0.94663 0.99776 1.17106 0.97216 0.79248 0.94741 1.91536 1.90759 1.33711 1.94552 0.91987 0.89710 0.91425 0.93236 0.86152 0.91778 0.89714 0.90764 0.90251 0.92152 0.93571 0.94089 0.92643 0.84148 0.84102 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.68 37.16 0.32 -1.21 16 2 C -0.07 -0.97 2.09 -92.92 -0.19 -1.16 16 3 H 0.11 1.52 6.39 -51.93 -0.33 1.19 16 4 C 0.52 8.28 6.90 -10.99 -0.08 8.21 16 5 O -0.54 -9.99 14.81 5.55 0.08 -9.91 16 6 N -0.59 -9.64 2.89 -181.57 -0.52 -10.16 16 7 C 0.06 0.85 7.65 59.84 0.46 1.31 16 8 C 0.12 2.07 5.19 -4.04 -0.02 2.05 16 9 C 0.14 2.61 4.49 -66.86 -0.30 2.31 16 10 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.15 -2.56 7.86 -25.80 -0.20 -2.76 16 12 C 0.09 1.99 7.41 -2.85 -0.02 1.97 16 13 N -0.62 -14.26 3.25 -169.75 -0.55 -14.82 16 14 C -0.23 -6.10 9.21 -15.06 -0.14 -6.24 16 15 H 0.10 2.61 5.68 -52.48 -0.30 2.31 16 16 C 0.02 0.64 5.50 -17.43 -0.10 0.55 16 17 N -0.92 -26.73 13.97 55.49 0.78 -25.95 16 18 Si 0.90 22.05 24.74 -169.99 -4.21 17.84 16 19 H -0.29 -7.13 7.09 56.52 0.40 -6.72 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.27 -6.37 6.56 56.52 0.37 -6.00 16 22 C -0.10 -1.29 4.40 -104.54 -0.46 -1.75 16 23 C -0.03 -0.31 7.93 -39.61 -0.31 -0.63 16 24 C -0.16 -1.69 10.02 -39.51 -0.40 -2.09 16 25 C 0.12 1.38 7.30 -39.43 -0.29 1.09 16 26 F -0.13 -1.50 17.27 2.25 0.04 -1.46 16 27 C -0.19 -2.21 10.01 -39.45 -0.39 -2.60 16 28 C 0.14 1.75 7.24 -39.43 -0.29 1.47 16 29 F -0.13 -1.76 16.19 2.25 0.04 -1.73 16 30 H 0.06 0.57 7.37 -51.93 -0.38 0.19 16 31 H 0.08 0.84 4.45 -51.93 -0.23 0.61 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.62 6.64 -51.93 -0.34 0.27 16 34 H 0.12 2.31 4.86 -51.93 -0.25 2.06 16 35 H 0.06 0.94 6.35 -51.93 -0.33 0.61 16 36 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 37 H 0.07 1.18 7.61 -51.93 -0.40 0.79 16 38 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 1.02 3.51 -51.93 -0.18 0.84 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.14 1.45 7.51 -52.49 -0.39 1.06 16 44 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 359.27 15.07 5.41 5.41 Total: -1.00 -30.75 359.27 -7.03 -37.77 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.68 Total: 2.48 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.41 Total: 0.50 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.30 Total: -50.93 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.21 Total: 17.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.75 -7.03 -37.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264380488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.940 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds