Wall clock time and date at job start Tue Mar 31 2020 21:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46953 * 2 1 4 4 C 1.50695 * 109.47303 * 120.00463 * 2 1 3 5 5 O 1.21286 * 120.00179 * 119.99879 * 4 2 1 6 6 N 1.34769 * 119.99904 * 300.00300 * 4 2 1 7 7 C 1.46496 * 120.00379 * 359.97438 * 6 4 2 8 8 C 1.46503 * 120.00022 * 179.97438 * 6 4 2 9 9 C 1.53003 * 109.47102 * 83.90571 * 8 6 4 10 10 H 1.08998 * 112.96417 * 308.67646 * 9 8 6 11 11 C 1.53945 * 113.77063 * 176.99962 * 9 8 6 12 12 C 1.53942 * 86.29222 * 222.09323 * 11 9 8 13 13 N 1.47580 * 113.76895 * 80.35947 * 9 8 6 14 14 C 1.36932 * 134.49310 * 318.92905 * 13 9 8 15 15 H 1.08004 * 119.99673 * 335.42056 * 14 13 9 16 16 C 1.38811 * 120.00317 * 155.42056 * 14 13 9 17 17 N 1.31616 * 120.00054 * 169.85874 * 16 14 13 18 18 Si 1.86799 * 119.99669 * 349.85615 * 16 14 13 19 19 H 1.48493 * 109.47330 * 84.39913 * 18 16 14 20 20 H 1.48503 * 109.46868 * 204.40212 * 18 16 14 21 21 H 1.48499 * 109.47211 * 324.39782 * 18 16 14 22 22 C 1.50704 * 109.47313 * 240.00733 * 2 1 3 23 23 C 1.38234 * 119.98779 * 300.25562 * 22 2 1 24 24 C 1.38177 * 120.05203 * 180.25286 * 23 22 2 25 25 C 1.38501 * 120.02650 * 359.48812 * 24 23 22 26 26 F 1.35098 * 120.01352 * 180.22649 * 25 24 23 27 27 C 1.38397 * 119.97001 * 0.25649 * 25 24 23 28 28 C 1.38441 * 119.95428 * 359.97438 * 27 25 24 29 29 F 1.35094 * 120.01386 * 179.97438 * 28 27 25 30 30 H 1.09004 * 109.46741 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47029 * 299.99593 * 1 2 3 32 32 H 1.09000 * 109.47032 * 59.99457 * 1 2 3 33 33 H 1.09006 * 109.47073 * 85.48414 * 7 6 4 34 34 H 1.09000 * 109.47794 * 205.48205 * 7 6 4 35 35 H 1.09003 * 109.46993 * 325.48680 * 7 6 4 36 36 H 1.09000 * 109.47307 * 203.90671 * 8 6 4 37 37 H 1.08995 * 109.47218 * 323.90734 * 8 6 4 38 38 H 1.09004 * 113.74219 * 336.44222 * 11 9 8 39 39 H 1.09002 * 113.73769 * 107.63514 * 11 9 8 40 40 H 1.08990 * 113.77210 * 137.90834 * 12 11 9 41 41 H 1.09005 * 113.76463 * 269.19247 * 12 11 9 42 42 H 0.97004 * 119.99962 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.97351 * 359.97438 * 23 22 2 44 44 H 1.08002 * 119.98964 * 179.76112 * 24 23 22 45 45 H 1.08005 * 120.02043 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7297 -1.6966 1.1190 6 7 1.7068 -0.2502 2.4544 7 6 0.8650 0.9412 2.5890 8 6 2.1947 -0.9412 3.6506 9 6 3.6082 -0.4561 3.9789 10 1 4.2836 -0.5046 3.1247 11 6 4.1907 -1.0675 5.2660 12 6 4.7196 0.3441 5.5781 13 7 3.6431 0.8353 4.6923 14 6 2.9544 2.0133 4.5788 15 1 2.5007 2.2849 3.6371 16 6 2.8394 2.8585 5.6739 17 7 2.3559 4.0729 5.5201 18 14 3.3708 2.2721 7.3660 19 1 4.8329 2.4777 7.5246 20 1 2.6465 3.0441 8.4075 21 1 3.0554 0.8282 7.5112 22 6 2.0324 -0.7103 -1.2306 23 6 1.6940 -2.0321 -1.4519 24 6 2.1582 -2.6862 -2.5771 25 6 2.9545 -2.0148 -3.4900 26 9 3.4045 -2.6532 -4.5923 27 6 3.2896 -0.6898 -3.2720 28 6 2.8279 -0.0369 -2.1419 29 9 3.1548 1.2563 -1.9278 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.1848 0.6515 2.5416 34 1 1.0662 1.4221 3.5463 35 1 1.0870 1.6363 1.7793 36 1 1.5328 -0.7265 4.4896 37 1 2.2126 -2.0155 3.4676 38 1 3.4333 -1.4175 5.9675 39 1 4.9755 -1.8024 5.0865 40 1 4.6001 0.6374 6.6210 41 1 5.7231 0.5317 5.1959 42 1 2.2752 4.6634 6.2855 43 1 1.0700 -2.5554 -0.7426 44 1 1.8963 -3.7201 -2.7471 45 1 3.9109 -0.1656 -3.9832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264380488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:04 Heat of formation + Delta-G solvation = -42.216358 kcal Electronic energy + Delta-G solvation = -30148.086090 eV Core-core repulsion = 25803.684061 eV Total energy + Delta-G solvation = -4344.402029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.12173 -50.02996 -41.51820 -40.10837 -39.31120 -36.43167 -35.14985 -34.39340 -31.84683 -30.95560 -30.27766 -29.20837 -27.68204 -25.73215 -25.13741 -24.52548 -24.06230 -22.65270 -20.89933 -20.06099 -19.31562 -19.05184 -18.54455 -17.71873 -17.45132 -17.20894 -16.99822 -16.76193 -16.60027 -16.39580 -16.34006 -15.76628 -15.52218 -15.21739 -14.99606 -14.89566 -14.69090 -14.36188 -14.26616 -13.85303 -13.62597 -13.37682 -13.16613 -13.03845 -12.92988 -12.83581 -12.77125 -12.72692 -12.59330 -12.24443 -12.09923 -12.04971 -11.93449 -11.44106 -11.23306 -10.71043 -10.67194 -10.07305 -9.67377 -9.55422 -8.92033 -8.08757 -5.41962 -0.12791 0.00430 1.34123 1.39836 1.49647 1.62510 2.03841 2.39267 2.47539 2.81397 2.95370 3.24209 3.28271 3.42952 3.47466 3.67563 3.79808 3.88476 4.04232 4.14432 4.21526 4.26845 4.34251 4.40023 4.49267 4.57159 4.62501 4.66225 4.71383 4.79013 4.80660 4.86177 4.88274 4.91446 4.94654 4.98492 5.03180 5.11979 5.23723 5.31293 5.41905 5.52829 5.67569 5.72555 6.23923 6.48973 6.61118 7.17915 7.53285 8.38632 9.10514 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.003067 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.634057 B = 9127.016568 C = 9488.634695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 H 0.098 0.902 4 C 0.516 3.484 5 O -0.569 6.569 6 N -0.596 5.596 7 C 0.063 3.937 8 C 0.125 3.875 9 C 0.134 3.866 10 H 0.040 0.960 11 C -0.122 4.122 12 C 0.081 3.919 13 N -0.642 5.642 14 C -0.210 4.210 15 H 0.083 0.917 16 C -0.035 4.035 17 N -0.961 5.961 18 Si 0.947 3.053 19 H -0.292 1.292 20 H -0.315 1.315 21 H -0.251 1.251 22 C -0.113 4.113 23 C -0.031 4.031 24 C -0.154 4.154 25 C 0.120 3.880 26 F -0.134 7.134 27 C -0.194 4.194 28 C 0.115 3.885 29 F -0.140 7.140 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.259 0.741 43 H 0.152 0.848 44 H 0.168 0.832 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.951 -14.465 -14.163 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 H 0.116 0.884 4 C 0.305 3.695 5 O -0.449 6.449 6 N -0.326 5.326 7 C -0.079 4.079 8 C 0.002 3.998 9 C 0.027 3.973 10 H 0.057 0.943 11 C -0.161 4.161 12 C -0.043 4.043 13 N -0.370 5.370 14 C -0.338 4.338 15 H 0.100 0.900 16 C -0.229 4.229 17 N -0.609 5.609 18 Si 0.779 3.221 19 H -0.220 1.220 20 H -0.244 1.244 21 H -0.176 1.176 22 C -0.114 4.114 23 C -0.049 4.049 24 C -0.173 4.173 25 C 0.100 3.900 26 F -0.113 7.113 27 C -0.213 4.213 28 C 0.095 3.905 29 F -0.118 7.118 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.170 0.830 44 H 0.186 0.814 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.734 -14.616 -14.181 20.908 hybrid contribution 0.933 1.044 0.788 1.607 sum -3.801 -13.573 -13.393 19.443 Atomic orbital electron populations 1.22073 0.89171 1.04230 1.04914 1.20171 1.00183 0.99669 0.89072 0.88383 1.20673 0.79800 0.84273 0.84801 1.90646 1.39288 1.28065 1.86864 1.47731 1.50471 1.29029 1.05404 1.22416 0.94308 0.86446 1.04690 1.21717 0.94628 0.96792 0.86678 1.22719 0.95744 0.84222 0.94592 0.94275 1.23432 1.00784 0.95224 0.96642 1.23113 0.92514 0.93828 0.94817 1.46626 1.38556 1.11472 1.40364 1.18825 1.25251 0.93737 0.95950 0.89990 1.25545 1.00358 0.96254 1.00743 1.69853 1.52525 1.07446 1.31098 0.85881 0.76584 0.78345 0.81328 1.22001 1.24368 1.17611 1.19590 1.00173 0.96019 0.95653 1.20813 0.96782 0.91743 0.95563 1.21433 0.99252 1.02510 0.94070 1.17369 0.97439 0.90217 0.84953 1.91520 1.87472 1.81483 1.50817 1.21079 1.05781 0.94988 0.99492 1.17311 0.98333 0.79071 0.95767 1.91500 1.91034 1.34580 1.94732 0.90720 0.89644 0.89957 0.89878 0.89964 0.91559 0.89775 0.89128 0.88827 0.88904 0.94343 0.93635 0.93225 0.83042 0.81441 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.68 71.98 0.62 -2.03 16 2 C -0.07 -1.75 2.09 -12.29 -0.03 -1.78 16 3 H 0.10 2.71 6.39 -2.38 -0.02 2.69 16 4 C 0.52 15.92 6.90 87.66 0.60 16.52 16 5 O -0.57 -20.05 14.81 -3.05 -0.05 -20.10 16 6 N -0.60 -18.77 2.89 -846.76 -2.44 -21.22 16 7 C 0.06 1.92 7.65 127.77 0.98 2.90 16 8 C 0.13 4.05 5.19 86.38 0.45 4.50 16 9 C 0.13 4.96 4.49 45.09 0.20 5.16 16 10 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 11 C -0.12 -3.88 7.86 31.25 0.25 -3.63 16 12 C 0.08 3.26 7.41 86.44 0.64 3.90 16 13 N -0.64 -29.03 3.25 -690.97 -2.25 -31.28 16 14 C -0.21 -11.05 9.21 84.03 0.77 -10.27 16 15 H 0.08 4.51 5.68 -2.91 -0.02 4.49 16 16 C -0.03 -1.96 5.50 84.86 0.47 -1.49 16 17 N -0.96 -57.87 13.97 21.65 0.30 -57.57 16 18 Si 0.95 45.70 24.74 68.60 1.70 47.39 16 19 H -0.29 -14.10 7.09 99.48 0.71 -13.40 16 20 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 21 H -0.25 -11.14 6.56 99.48 0.65 -10.49 16 22 C -0.11 -2.75 4.40 -19.81 -0.09 -2.83 16 23 C -0.03 -0.63 7.93 22.25 0.18 -0.46 16 24 C -0.15 -2.78 10.02 22.32 0.22 -2.55 16 25 C 0.12 2.42 7.30 22.37 0.16 2.58 16 26 F -0.13 -2.71 17.27 44.97 0.78 -1.94 16 27 C -0.19 -4.19 10.01 22.36 0.22 -3.97 16 28 C 0.11 2.89 7.24 22.37 0.16 3.05 16 29 F -0.14 -3.94 16.19 44.97 0.73 -3.21 16 30 H 0.07 1.17 7.37 -2.39 -0.02 1.15 16 31 H 0.08 1.51 4.45 -2.39 -0.01 1.50 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.93 6.64 -2.38 -0.02 1.92 16 34 H 0.08 3.20 4.86 -2.39 -0.01 3.19 16 35 H 0.07 1.95 6.35 -2.39 -0.02 1.93 16 36 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 37 H 0.09 2.65 7.61 -2.39 -0.02 2.63 16 38 H 0.09 2.75 8.10 -2.38 -0.02 2.73 16 39 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 1.62 3.51 -2.39 -0.01 1.61 16 41 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.15 2.73 7.51 -2.91 -0.02 2.71 16 44 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 45 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -67.15 359.27 5.57 -61.58 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.98 Total: 16.74 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.82 Total: 9.60 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.39 Total: -110.06 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 1.50 Total: -5.15 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.70 Total: 47.39 kcal Total: -67.15 5.57 -61.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264380488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.362 kcal (2) G-P(sol) polarization free energy of solvation -67.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds