Wall clock time and date at job start Tue Mar 31 2020 21:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47343 * 2 1 4 4 C 1.50708 * 109.47279 * 119.99756 * 2 1 3 5 5 O 1.21277 * 120.00017 * 120.00084 * 4 2 1 6 6 N 1.34772 * 120.00020 * 300.00441 * 4 2 1 7 7 C 1.46503 * 120.00133 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47183 * 173.02874 * 7 6 4 9 9 H 1.09001 * 109.99859 * 57.00826 * 8 7 6 10 10 C 1.54323 * 109.88349 * 178.10468 * 8 7 6 11 11 C 1.55436 * 102.96844 * 141.60806 * 10 8 7 12 12 C 1.54912 * 101.45413 * 324.52016 * 11 10 8 13 13 N 1.47022 * 109.88216 * 295.91281 * 8 7 6 14 14 C 1.36941 * 125.64861 * 61.62570 * 13 8 7 15 15 H 1.08000 * 119.99734 * 319.48219 * 14 13 8 16 16 C 1.38803 * 120.00360 * 139.48438 * 14 13 8 17 17 N 1.31620 * 120.00274 * 167.42999 * 16 14 13 18 18 Si 1.86800 * 119.99834 * 347.42904 * 16 14 13 19 19 H 1.48495 * 109.47271 * 89.31706 * 18 16 14 20 20 H 1.48505 * 109.47114 * 209.31391 * 18 16 14 21 21 H 1.48496 * 109.47270 * 329.30977 * 18 16 14 22 22 C 1.50699 * 109.47410 * 239.99750 * 2 1 3 23 23 C 1.38257 * 119.96401 * 119.99861 * 22 2 1 24 24 C 1.38213 * 120.07000 * 180.02562 * 23 22 2 25 25 C 1.38412 * 120.00101 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.03417 * 179.97438 * 25 24 23 27 27 C 1.38646 * 119.92875 * 0.02562 * 25 24 23 28 28 F 1.35104 * 120.03749 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.96297 * 299.72929 * 22 2 1 30 30 H 1.09007 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47176 * 299.99939 * 1 2 3 32 32 H 1.08999 * 109.47122 * 60.00262 * 1 2 3 33 33 H 0.97002 * 119.99989 * 359.97438 * 6 4 2 34 34 H 1.08995 * 109.47056 * 53.03113 * 7 6 4 35 35 H 1.08993 * 109.46776 * 293.02922 * 7 6 4 36 36 H 1.08994 * 110.71772 * 259.97810 * 10 8 7 37 37 H 1.09006 * 110.71692 * 23.24672 * 10 8 7 38 38 H 1.09002 * 111.12227 * 206.46728 * 11 10 8 39 39 H 1.09008 * 111.01551 * 82.52825 * 11 10 8 40 40 H 1.09000 * 110.36604 * 278.10662 * 12 11 10 41 41 H 1.09003 * 110.36702 * 155.89528 * 12 11 10 42 42 H 0.96998 * 120.00133 * 180.02562 * 17 16 14 43 43 H 1.08003 * 119.96633 * 0.02562 * 23 22 2 44 44 H 1.08005 * 119.99991 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00246 * 359.96933 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6508 8 6 1.8326 -0.1256 4.8939 9 1 0.7552 0.0345 4.9340 10 6 2.3005 -0.8683 6.1632 11 6 2.8069 0.2842 7.0750 12 6 3.4220 1.2525 6.0339 13 7 2.5296 1.1686 4.8636 14 6 2.3756 2.1357 3.9064 15 1 2.2919 1.8575 2.8662 16 6 2.3271 3.4736 4.2730 17 7 2.4285 4.4116 3.3553 18 14 2.1180 3.9428 6.0690 19 1 3.4529 4.0575 6.7094 20 1 1.4113 5.2457 6.1612 21 1 1.3234 2.8986 6.7642 22 6 2.0323 -0.7104 -1.2304 23 6 2.8271 -0.0378 -2.1400 24 6 3.2887 -0.6871 -3.2694 25 6 2.9548 -2.0120 -3.4912 26 9 3.4052 -2.6471 -4.5952 27 6 2.1569 -2.6861 -2.5795 28 9 1.8301 -3.9795 -2.7935 29 6 1.7026 -2.0353 -1.4455 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5389 2.5436 34 1 3.2774 -1.0504 3.5908 35 1 1.7327 -1.9259 3.7152 36 1 1.4680 -1.3931 6.6318 37 1 3.1106 -1.5590 5.9293 38 1 3.5646 -0.0714 7.7732 39 1 1.9794 0.7554 7.6056 40 1 4.4291 0.9324 5.7668 41 1 3.4394 2.2696 6.4256 42 1 2.3950 5.3465 3.6116 43 1 3.0877 0.9961 -1.9678 44 1 3.9092 -0.1605 -3.9795 45 1 1.0857 -2.5610 -0.7318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267280737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:42 Heat of formation + Delta-G solvation = -79.283100 kcal Electronic energy + Delta-G solvation = -29587.080210 eV Core-core repulsion = 25241.070847 eV Total energy + Delta-G solvation = -4346.009363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.47420 -48.55132 -40.14815 -38.67993 -37.77521 -34.11131 -33.89507 -32.73006 -30.86164 -30.05082 -29.78342 -28.79233 -25.36309 -24.59386 -23.77527 -23.16667 -21.89068 -20.86140 -19.89343 -19.38352 -18.00304 -17.52548 -17.24573 -16.81218 -16.33892 -16.27233 -15.99440 -15.56861 -14.97261 -14.95363 -14.60524 -14.50984 -14.19598 -14.10420 -13.70340 -13.52891 -13.30637 -13.09755 -12.66019 -12.58023 -12.49336 -12.27184 -12.05878 -11.95114 -11.67232 -11.41216 -11.34539 -11.24574 -11.19082 -10.93779 -10.76077 -10.54669 -10.25103 -9.91203 -9.66029 -9.38323 -9.06812 -8.69592 -8.65519 -8.42565 -6.85903 -6.12058 -3.64053 0.85200 0.98772 3.03322 3.22732 3.24770 3.36464 3.41275 3.73809 3.75953 4.27616 4.40120 4.40924 4.53786 4.86407 4.91208 5.03338 5.06354 5.07799 5.18873 5.28431 5.33108 5.37177 5.47545 5.60687 5.72803 5.74870 5.79789 5.82396 5.87751 5.90302 5.97119 6.03996 6.06443 6.10173 6.21245 6.27963 6.34509 6.37008 6.53085 6.69981 6.78737 6.80569 6.99739 7.82925 8.04885 8.20581 8.65792 8.70255 9.51692 10.13593 11.01325 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.002904 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.399240 B = 9637.931528 C =10566.844087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 H 0.117 0.883 4 C 0.515 3.485 5 O -0.553 6.553 6 N -0.703 5.703 7 C 0.117 3.883 8 C 0.143 3.857 9 H 0.048 0.952 10 C -0.121 4.121 11 C -0.136 4.136 12 C 0.114 3.886 13 N -0.602 5.602 14 C -0.259 4.259 15 H 0.089 0.911 16 C 0.038 3.962 17 N -0.903 5.903 18 Si 0.895 3.105 19 H -0.286 1.286 20 H -0.304 1.304 21 H -0.268 1.268 22 C -0.039 4.039 23 C -0.090 4.090 24 C -0.128 4.128 25 C 0.060 3.940 26 F -0.134 7.134 27 C 0.063 3.937 28 F -0.132 7.132 29 C -0.090 4.090 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.030 0.970 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -9.026 -6.250 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 H 0.135 0.865 4 C 0.300 3.700 5 O -0.432 6.432 6 N -0.355 5.355 7 C -0.009 4.009 8 C 0.036 3.964 9 H 0.066 0.934 10 C -0.160 4.160 11 C -0.175 4.175 12 C -0.011 4.011 13 N -0.328 5.328 14 C -0.387 4.387 15 H 0.106 0.894 16 C -0.164 4.164 17 N -0.544 5.544 18 Si 0.727 3.273 19 H -0.214 1.214 20 H -0.232 1.232 21 H -0.193 1.193 22 C -0.039 4.039 23 C -0.109 4.109 24 C -0.147 4.147 25 C 0.040 3.960 26 F -0.112 7.112 27 C 0.043 3.957 28 F -0.111 7.111 29 C -0.109 4.109 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.252 0.748 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.102 -9.536 -6.463 11.930 hybrid contribution -0.084 0.508 0.826 0.973 sum -3.186 -9.029 -5.637 11.110 Atomic orbital electron populations 1.21801 0.91736 1.02731 1.03568 1.20352 0.97971 1.01112 0.90292 0.86490 1.20230 0.80549 0.84506 0.84714 1.90677 1.38604 1.26947 1.86939 1.46142 1.52568 1.31936 1.04876 1.21911 0.99600 0.94445 0.84957 1.21295 0.96180 0.87353 0.91582 0.93411 1.22535 1.00573 0.97275 0.95613 1.22829 1.00304 0.96892 0.97447 1.21941 0.93785 0.97106 0.88233 1.44648 1.44887 1.15843 1.27423 1.18625 1.47588 0.84516 0.87936 0.89376 1.25539 0.97364 0.96077 0.97370 1.69752 1.51411 1.00180 1.33084 0.86654 0.77629 0.76676 0.86339 1.21405 1.23247 1.19338 1.19303 0.96529 0.92985 0.95112 1.21058 0.96093 1.00921 0.92788 1.21002 1.01946 0.92078 0.99625 1.17679 1.00483 0.92228 0.85596 1.91503 1.87481 1.81970 1.50279 1.17612 1.01528 0.79832 0.96723 1.91510 1.91097 1.33688 1.94798 1.20840 1.00486 0.94698 0.94876 0.92126 0.90876 0.91152 0.74797 0.91700 0.92990 0.91444 0.91299 0.91556 0.91615 0.95169 0.93961 0.92480 0.83882 0.83712 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.90 37.15 0.33 -1.17 16 2 C -0.08 -1.00 2.90 -92.92 -0.27 -1.27 16 3 H 0.12 1.52 7.87 -51.93 -0.41 1.11 16 4 C 0.51 8.54 7.02 -10.98 -0.08 8.47 16 5 O -0.55 -10.78 15.06 5.56 0.08 -10.70 16 6 N -0.70 -11.83 4.18 -60.29 -0.25 -12.08 16 7 C 0.12 1.98 5.16 -4.04 -0.02 1.96 16 8 C 0.14 2.50 3.31 -66.95 -0.22 2.28 16 9 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 10 C -0.12 -1.77 6.48 -24.74 -0.16 -1.93 16 11 C -0.14 -2.17 7.11 -24.43 -0.17 -2.35 16 12 C 0.11 2.29 6.22 -2.53 -0.02 2.27 16 13 N -0.60 -12.94 2.62 -162.58 -0.43 -13.36 16 14 C -0.26 -6.41 9.39 -15.06 -0.14 -6.55 16 15 H 0.09 2.22 5.72 -52.49 -0.30 1.92 16 16 C 0.04 1.00 5.48 -17.43 -0.10 0.91 16 17 N -0.90 -25.29 13.97 55.49 0.78 -24.52 16 18 Si 0.90 21.17 24.87 -169.99 -4.23 16.94 16 19 H -0.29 -6.74 6.69 56.52 0.38 -6.36 16 20 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.27 -6.14 7.07 56.52 0.40 -5.74 16 22 C -0.04 -0.50 4.40 -104.62 -0.46 -0.96 16 23 C -0.09 -1.04 9.67 -39.58 -0.38 -1.42 16 24 C -0.13 -1.42 10.02 -39.53 -0.40 -1.82 16 25 C 0.06 0.78 7.31 -39.37 -0.29 0.50 16 26 F -0.13 -1.80 17.18 2.25 0.04 -1.76 16 27 C 0.06 0.87 7.31 -39.36 -0.29 0.59 16 28 F -0.13 -1.92 17.18 2.25 0.04 -1.88 16 29 C -0.09 -1.21 7.90 -39.52 -0.31 -1.53 16 30 H 0.06 0.62 7.40 -51.93 -0.38 0.23 16 31 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.41 7.04 5.86 -40.82 -0.24 6.80 16 34 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.07 8.12 -51.92 -0.42 0.65 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.93 3.25 -51.93 -0.17 0.76 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.14 1.38 7.94 -52.48 -0.42 0.96 16 44 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 45 H 0.14 1.87 7.51 -52.49 -0.39 1.47 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -30.08 366.94 -7.49 -37.57 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.08 Total: 6.29 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.97 Total: -2.02 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.10 Total: -49.96 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.08 Total: -3.64 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.23 Total: 16.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.08 -7.49 -37.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267280737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.712 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds