Wall clock time and date at job start Tue Mar 31 2020 21:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47343 * 2 1 4 4 C 1.50708 * 109.47279 * 119.99756 * 2 1 3 5 5 O 1.21277 * 120.00017 * 120.00084 * 4 2 1 6 6 N 1.34772 * 120.00020 * 300.00441 * 4 2 1 7 7 C 1.46503 * 120.00133 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47183 * 173.02874 * 7 6 4 9 9 H 1.09001 * 109.99859 * 57.00826 * 8 7 6 10 10 C 1.54323 * 109.88349 * 178.10468 * 8 7 6 11 11 C 1.55436 * 102.96844 * 141.60806 * 10 8 7 12 12 C 1.54912 * 101.45413 * 324.52016 * 11 10 8 13 13 N 1.47022 * 109.88216 * 295.91281 * 8 7 6 14 14 C 1.36941 * 125.64861 * 61.62570 * 13 8 7 15 15 H 1.08000 * 119.99734 * 319.48219 * 14 13 8 16 16 C 1.38803 * 120.00360 * 139.48438 * 14 13 8 17 17 N 1.31620 * 120.00274 * 167.42999 * 16 14 13 18 18 Si 1.86800 * 119.99834 * 347.42904 * 16 14 13 19 19 H 1.48495 * 109.47271 * 89.31706 * 18 16 14 20 20 H 1.48505 * 109.47114 * 209.31391 * 18 16 14 21 21 H 1.48496 * 109.47270 * 329.30977 * 18 16 14 22 22 C 1.50699 * 109.47410 * 239.99750 * 2 1 3 23 23 C 1.38257 * 119.96401 * 119.99861 * 22 2 1 24 24 C 1.38213 * 120.07000 * 180.02562 * 23 22 2 25 25 C 1.38412 * 120.00101 * 0.02562 * 24 23 22 26 26 F 1.35099 * 120.03417 * 179.97438 * 25 24 23 27 27 C 1.38646 * 119.92875 * 0.02562 * 25 24 23 28 28 F 1.35104 * 120.03749 * 180.02562 * 27 25 24 29 29 C 1.38213 * 119.96297 * 299.72929 * 22 2 1 30 30 H 1.09007 * 109.47343 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47176 * 299.99939 * 1 2 3 32 32 H 1.08999 * 109.47122 * 60.00262 * 1 2 3 33 33 H 0.97002 * 119.99989 * 359.97438 * 6 4 2 34 34 H 1.08995 * 109.47056 * 53.03113 * 7 6 4 35 35 H 1.08993 * 109.46776 * 293.02922 * 7 6 4 36 36 H 1.08994 * 110.71772 * 259.97810 * 10 8 7 37 37 H 1.09006 * 110.71692 * 23.24672 * 10 8 7 38 38 H 1.09002 * 111.12227 * 206.46728 * 11 10 8 39 39 H 1.09008 * 111.01551 * 82.52825 * 11 10 8 40 40 H 1.09000 * 110.36604 * 278.10662 * 12 11 10 41 41 H 1.09003 * 110.36702 * 155.89528 * 12 11 10 42 42 H 0.96998 * 120.00133 * 180.02562 * 17 16 14 43 43 H 1.08003 * 119.96633 * 0.02562 * 23 22 2 44 44 H 1.08005 * 119.99991 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.00246 * 359.96933 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2499 2.4546 7 6 2.1946 -0.9408 3.6508 8 6 1.8326 -0.1256 4.8939 9 1 0.7552 0.0345 4.9340 10 6 2.3005 -0.8683 6.1632 11 6 2.8069 0.2842 7.0750 12 6 3.4220 1.2525 6.0339 13 7 2.5296 1.1686 4.8636 14 6 2.3756 2.1357 3.9064 15 1 2.2919 1.8575 2.8662 16 6 2.3271 3.4736 4.2730 17 7 2.4285 4.4116 3.3553 18 14 2.1180 3.9428 6.0690 19 1 3.4529 4.0575 6.7094 20 1 1.4113 5.2457 6.1612 21 1 1.3234 2.8986 6.7642 22 6 2.0323 -0.7104 -1.2304 23 6 2.8271 -0.0378 -2.1400 24 6 3.2887 -0.6871 -3.2694 25 6 2.9548 -2.0120 -3.4912 26 9 3.4052 -2.6471 -4.5952 27 6 2.1569 -2.6861 -2.5795 28 9 1.8301 -3.9795 -2.7935 29 6 1.7026 -2.0353 -1.4455 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5389 2.5436 34 1 3.2774 -1.0504 3.5908 35 1 1.7327 -1.9259 3.7152 36 1 1.4680 -1.3931 6.6318 37 1 3.1106 -1.5590 5.9293 38 1 3.5646 -0.0714 7.7732 39 1 1.9794 0.7554 7.6056 40 1 4.4291 0.9324 5.7668 41 1 3.4394 2.2696 6.4256 42 1 2.3950 5.3465 3.6116 43 1 3.0877 0.9961 -1.9678 44 1 3.9092 -0.1605 -3.9795 45 1 1.0857 -2.5610 -0.7318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267280737.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:41 Heat of formation + Delta-G solvation = -95.982405 kcal Electronic energy + Delta-G solvation = -29587.804346 eV Core-core repulsion = 25241.070847 eV Total energy + Delta-G solvation = -4346.733500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.52961 -49.61340 -41.34449 -39.92242 -39.13093 -35.48394 -34.99380 -34.56890 -31.84275 -31.73170 -31.04126 -29.89320 -26.71802 -25.96515 -25.16061 -24.18593 -23.07580 -22.18807 -21.36233 -20.70075 -19.18326 -18.84930 -18.38637 -18.03611 -17.85380 -17.44243 -17.24939 -16.88045 -16.44691 -16.04463 -15.94464 -15.58415 -15.37687 -15.20296 -15.02887 -14.82571 -14.71397 -14.46640 -14.13642 -13.84899 -13.59650 -13.57313 -13.35681 -13.01664 -12.99647 -12.93415 -12.68187 -12.57383 -12.26245 -12.21793 -12.17430 -11.96079 -11.71102 -11.51316 -11.36741 -10.70261 -10.63150 -10.04933 -9.85891 -9.67834 -8.63314 -8.11641 -5.59627 -0.15873 0.02078 1.34130 1.43574 1.53739 1.72398 2.18898 2.45886 2.57772 2.75149 3.12684 3.25013 3.37695 3.40616 3.58496 3.86189 3.94293 4.00175 4.03861 4.08501 4.15694 4.21793 4.33799 4.37785 4.52606 4.66348 4.71815 4.76734 4.79254 4.83330 4.87300 4.90376 4.95532 5.01572 5.01873 5.03038 5.16032 5.23753 5.33617 5.39289 5.50212 5.63575 5.71995 5.97283 6.27562 6.69013 6.87392 7.34054 7.59019 8.28314 9.04047 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017646 B = 0.002904 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.399240 B = 9637.931528 C =10566.844087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 H 0.119 0.881 4 C 0.511 3.489 5 O -0.584 6.584 6 N -0.705 5.705 7 C 0.122 3.878 8 C 0.140 3.860 9 H 0.052 0.948 10 C -0.112 4.112 11 C -0.127 4.127 12 C 0.101 3.899 13 N -0.618 5.618 14 C -0.239 4.239 15 H 0.078 0.922 16 C -0.015 4.015 17 N -0.946 5.946 18 Si 0.945 3.055 19 H -0.289 1.289 20 H -0.316 1.316 21 H -0.255 1.255 22 C -0.048 4.048 23 C -0.088 4.088 24 C -0.116 4.116 25 C 0.050 3.950 26 F -0.138 7.138 27 C 0.046 3.954 28 F -0.141 7.141 29 C -0.096 4.096 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.412 0.588 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.165 0.835 44 H 0.175 0.825 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 -9.872 -5.392 11.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.090 4.090 3 H 0.137 0.863 4 C 0.298 3.702 5 O -0.465 6.465 6 N -0.357 5.357 7 C -0.004 4.004 8 C 0.034 3.966 9 H 0.070 0.930 10 C -0.150 4.150 11 C -0.165 4.165 12 C -0.023 4.023 13 N -0.345 5.345 14 C -0.368 4.368 15 H 0.095 0.905 16 C -0.212 4.212 17 N -0.591 5.591 18 Si 0.776 3.224 19 H -0.217 1.217 20 H -0.246 1.246 21 H -0.179 1.179 22 C -0.048 4.048 23 C -0.106 4.106 24 C -0.135 4.135 25 C 0.030 3.970 26 F -0.117 7.117 27 C 0.026 3.974 28 F -0.120 7.120 29 C -0.115 4.115 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.251 0.749 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.182 0.818 44 H 0.193 0.807 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.519 -10.421 -5.577 12.332 hybrid contribution 0.102 0.693 0.520 0.873 sum -3.417 -9.728 -5.057 11.484 Atomic orbital electron populations 1.21805 0.89829 1.03306 1.04453 1.20334 0.99527 1.00487 0.88682 0.86297 1.20813 0.79787 0.84126 0.85464 1.90657 1.40026 1.28450 1.87417 1.46203 1.52437 1.31806 1.05219 1.21831 0.98247 0.95364 0.84944 1.21491 0.96048 0.85713 0.93343 0.93007 1.22567 1.02084 0.96793 0.93569 1.22800 1.00817 0.96036 0.96846 1.22089 0.93933 0.97308 0.88969 1.44829 1.45961 1.16494 1.27172 1.18733 1.44467 0.85088 0.88516 0.90471 1.26065 0.98661 0.96471 1.00040 1.69859 1.54488 1.00190 1.34524 0.85847 0.77288 0.76001 0.83231 1.21729 1.24567 1.17874 1.19394 0.97136 0.92920 0.95396 1.21349 0.95081 1.01854 0.92346 1.21313 1.01224 0.91185 0.99751 1.17893 1.00673 0.92978 0.85429 1.91490 1.87536 1.82206 1.50446 1.17803 1.02494 0.79712 0.97432 1.91478 1.91308 1.34323 1.94905 1.20837 1.00816 0.95049 0.94807 0.91723 0.90967 0.89270 0.74941 0.94071 0.91030 0.88256 0.90140 0.88557 0.91705 0.95536 0.95918 0.93019 0.81776 0.80732 0.84307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.90 71.98 0.64 -2.10 16 2 C -0.07 -1.76 2.90 -12.29 -0.04 -1.80 16 3 H 0.12 2.99 7.87 -2.38 -0.02 2.97 16 4 C 0.51 16.78 7.02 87.66 0.62 17.40 16 5 O -0.58 -22.77 15.06 -3.02 -0.05 -22.82 16 6 N -0.71 -23.32 4.18 -463.07 -1.94 -25.26 16 7 C 0.12 3.97 5.16 86.38 0.45 4.42 16 8 C 0.14 4.58 3.31 45.34 0.15 4.73 16 9 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 10 C -0.11 -2.83 6.48 31.88 0.21 -2.62 16 11 C -0.13 -3.59 7.11 32.09 0.23 -3.36 16 12 C 0.10 3.90 6.22 86.86 0.54 4.44 16 13 N -0.62 -25.82 2.62 -668.28 -1.75 -27.57 16 14 C -0.24 -11.81 9.39 84.03 0.79 -11.02 16 15 H 0.08 3.93 5.72 -2.91 -0.02 3.91 16 16 C -0.02 -0.82 5.48 84.86 0.46 -0.35 16 17 N -0.95 -54.07 13.97 21.65 0.30 -53.77 16 18 Si 0.94 43.83 24.87 68.60 1.71 45.53 16 19 H -0.29 -13.36 6.69 99.48 0.67 -12.69 16 20 H -0.32 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.25 -11.03 7.07 99.48 0.70 -10.33 16 22 C -0.05 -1.19 4.40 -19.87 -0.09 -1.28 16 23 C -0.09 -1.87 9.67 22.27 0.22 -1.65 16 24 C -0.12 -2.35 10.02 22.31 0.22 -2.13 16 25 C 0.05 1.26 7.31 22.41 0.16 1.43 16 26 F -0.14 -3.61 17.18 44.97 0.77 -2.84 16 27 C 0.05 1.26 7.31 22.41 0.16 1.42 16 28 F -0.14 -4.15 17.18 44.97 0.77 -3.38 16 29 C -0.10 -2.57 7.90 22.31 0.18 -2.39 16 30 H 0.06 1.24 7.40 -2.38 -0.02 1.23 16 31 H 0.07 1.47 7.56 -2.39 -0.02 1.45 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.41 13.87 5.86 -92.71 -0.54 13.32 16 34 H 0.04 1.54 8.10 -2.39 -0.02 1.52 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.88 7.85 -2.38 -0.02 1.86 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 1.87 8.12 -2.38 -0.02 1.85 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.02 0.97 3.25 -2.39 -0.01 0.97 16 42 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.16 2.75 7.94 -2.91 -0.02 2.73 16 44 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.14 3.69 7.51 -2.91 -0.02 3.67 16 Total: -1.00 -65.76 366.94 5.17 -60.60 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.44 Total: 24.36 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 4.90 Total: 5.14 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -3.38 Total: -106.60 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 1.55 Total: -6.22 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.71 Total: 45.53 kcal Total: -65.76 5.17 -60.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267280737.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.384 kcal (2) G-P(sol) polarization free energy of solvation -65.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds