Wall clock time and date at job start Tue Mar 31 2020 21:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 C 1.50700 * 109.47344 * 240.00034 * 2 1 3 5 5 O 1.21282 * 120.00055 * 240.00127 * 4 2 1 6 6 N 1.34773 * 119.99995 * 59.99931 * 4 2 1 7 7 C 1.46505 * 119.99975 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47032 * 185.65894 * 7 6 4 9 9 H 1.08997 * 109.99808 * 304.84088 * 8 7 6 10 10 C 1.54314 * 109.77084 * 65.99646 * 8 7 6 11 11 C 1.55156 * 102.85883 * 141.88487 * 10 8 7 12 12 C 1.54901 * 101.58473 * 324.29763 * 11 10 8 13 13 N 1.47019 * 109.88010 * 183.74494 * 8 7 6 14 14 C 1.36940 * 125.64992 * 61.67820 * 13 8 7 15 15 H 1.07991 * 119.99843 * 14.39745 * 14 13 8 16 16 C 1.38814 * 119.99795 * 194.39257 * 14 13 8 17 17 N 1.31614 * 120.00212 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99711 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47014 * 90.00214 * 18 16 14 20 20 H 1.48497 * 109.46981 * 210.00245 * 18 16 14 21 21 H 1.48499 * 109.47266 * 330.00367 * 18 16 14 22 22 C 1.50701 * 109.46992 * 119.99922 * 2 1 3 23 23 C 1.38252 * 119.96510 * 59.72716 * 22 2 1 24 24 C 1.38215 * 120.07034 * 179.76880 * 23 22 2 25 25 C 1.38411 * 120.00126 * 0.50238 * 24 23 22 26 26 F 1.35097 * 120.03781 * 179.72382 * 25 24 23 27 27 C 1.38654 * 119.92516 * 359.75277 * 25 24 23 28 28 F 1.35096 * 120.03117 * 180.02562 * 27 25 24 29 29 C 1.38210 * 119.96403 * 240.00124 * 22 2 1 30 30 H 1.09008 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47104 * 300.00039 * 1 2 3 32 32 H 1.08997 * 109.46821 * 60.00245 * 1 2 3 33 33 H 0.96998 * 120.00026 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46853 * 65.66267 * 7 6 4 35 35 H 1.08995 * 109.47389 * 305.66441 * 7 6 4 36 36 H 1.08996 * 110.92795 * 23.46552 * 10 8 7 37 37 H 1.09007 * 110.58869 * 260.14195 * 10 8 7 38 38 H 1.09002 * 111.00135 * 206.22529 * 11 10 8 39 39 H 1.09004 * 111.00750 * 82.38150 * 11 10 8 40 40 H 1.09001 * 110.37237 * 278.17305 * 12 11 10 41 41 H 1.09007 * 110.46149 * 155.89618 * 12 11 10 42 42 H 0.97003 * 120.00057 * 179.97438 * 17 16 14 43 43 H 1.08005 * 119.96551 * 0.02562 * 23 22 2 44 44 H 1.08006 * 120.00288 * 180.25767 * 24 23 22 45 45 H 1.08004 * 120.00093 * 359.95146 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4545 7 6 2.1948 -0.9409 -3.6507 8 6 1.8043 -0.1422 -4.8960 9 1 0.7274 0.0257 -4.9087 10 6 2.5490 1.2094 -4.9039 11 6 2.8910 1.4064 -6.4044 12 6 3.1805 -0.0483 -6.8510 13 7 2.2110 -0.8718 -6.1058 14 6 1.7596 -2.1090 -6.4813 15 1 0.8853 -2.5311 -6.0084 16 6 2.4258 -2.8203 -7.4697 17 7 3.4917 -2.3059 -8.0457 18 14 1.8096 -4.5076 -7.9824 19 1 0.8340 -4.3620 -9.0924 20 1 2.9554 -5.3362 -8.4360 21 1 1.1496 -5.1658 -6.8264 22 6 2.0323 -0.7104 1.2305 23 6 1.6932 -2.0324 1.4514 24 6 2.1566 -2.6874 2.5768 25 6 2.9525 -2.0169 3.4893 26 9 3.4012 -2.6549 4.5924 27 6 3.2882 -0.6896 3.2704 28 9 4.0653 -0.0332 4.1594 29 6 2.8268 -0.0380 2.1398 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1494 0.5389 -2.5435 34 1 1.7506 -1.9349 -3.7027 35 1 3.2799 -1.0300 -3.6016 36 1 3.4580 1.1566 -4.3047 37 1 1.8976 2.0080 -4.5487 38 1 3.7735 2.0349 -6.5246 39 1 2.0416 1.8204 -6.9477 40 1 4.1998 -0.3305 -6.5873 41 1 3.0236 -0.1557 -7.9244 42 1 3.9574 -2.8032 -8.7362 43 1 1.0689 -2.5550 0.7418 44 1 1.8944 -3.7214 2.7462 45 1 3.0880 0.9958 1.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267280738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:46 Heat of formation + Delta-G solvation = -84.934763 kcal Electronic energy + Delta-G solvation = -28903.180886 eV Core-core repulsion = 24556.926448 eV Total energy + Delta-G solvation = -4346.254438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.65271 -48.73053 -40.39702 -38.76348 -37.61246 -34.41125 -34.12275 -32.51381 -31.16575 -29.88044 -29.36126 -28.47353 -25.37144 -24.71166 -23.82121 -23.52515 -22.06726 -20.40505 -20.01601 -19.47677 -18.17976 -17.69254 -17.30489 -16.80963 -16.51620 -16.25709 -16.01127 -15.33833 -15.14556 -15.09383 -14.70191 -14.55984 -14.31736 -14.13723 -13.91970 -13.54109 -13.43160 -13.13663 -12.99831 -12.61491 -12.20164 -12.10251 -11.94172 -11.90222 -11.81032 -11.66199 -11.37101 -11.29048 -10.98443 -10.81920 -10.29290 -10.14769 -10.00123 -9.89100 -9.77869 -9.64248 -9.26941 -8.83776 -8.73316 -8.61435 -6.88525 -5.80802 -3.17709 0.66199 0.77592 2.74811 3.01264 3.36112 3.42057 3.44093 3.45401 3.57488 4.04851 4.17254 4.32258 4.44928 4.67500 4.75278 4.80902 4.89079 4.96096 5.26741 5.31980 5.35378 5.42969 5.46908 5.50894 5.54730 5.57928 5.65659 5.75892 5.76945 5.85241 6.00088 6.08150 6.12660 6.19191 6.40636 6.48891 6.50970 6.56943 6.64644 6.75608 7.00533 7.47175 7.56672 7.69902 7.75026 8.21216 8.38834 9.13059 9.73836 10.40859 11.31168 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015599 B = 0.002459 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.527772 B =11384.528963 C =12296.490061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 H 0.108 0.892 4 C 0.510 3.490 5 O -0.533 6.533 6 N -0.720 5.720 7 C 0.109 3.891 8 C 0.152 3.848 9 H 0.037 0.963 10 C -0.126 4.126 11 C -0.149 4.149 12 C 0.172 3.828 13 N -0.589 5.589 14 C -0.235 4.235 15 H 0.076 0.924 16 C -0.001 4.001 17 N -0.915 5.915 18 Si 0.911 3.089 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C -0.044 4.044 23 C -0.064 4.064 24 C -0.125 4.125 25 C 0.065 3.935 26 F -0.132 7.132 27 C 0.063 3.937 28 F -0.131 7.131 29 C -0.119 4.119 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.395 0.605 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.254 0.746 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 8.603 19.084 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.126 0.874 4 C 0.294 3.706 5 O -0.410 6.410 6 N -0.371 5.371 7 C -0.016 4.016 8 C 0.044 3.956 9 H 0.055 0.945 10 C -0.164 4.164 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.313 5.313 14 C -0.363 4.363 15 H 0.093 0.907 16 C -0.198 4.198 17 N -0.561 5.561 18 Si 0.741 3.259 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.045 4.045 23 C -0.082 4.082 24 C -0.144 4.144 25 C 0.044 3.956 26 F -0.110 7.110 27 C 0.043 3.957 28 F -0.110 7.110 29 C -0.137 4.137 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.229 0.771 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.064 0.936 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.366 7.693 19.020 21.207 hybrid contribution -0.106 -0.593 0.042 0.604 sum -5.472 7.100 19.062 21.064 Atomic orbital electron populations 1.21821 0.91503 1.03454 1.03198 1.20342 0.98063 1.00444 0.90669 0.87384 1.20288 0.80865 0.84957 0.84447 1.90751 1.37525 1.26111 1.86571 1.46117 1.53112 1.31837 1.05989 1.22261 0.99730 0.96951 0.82660 1.21125 0.96639 0.90897 0.86969 0.94531 1.22606 0.99703 0.96373 0.97697 1.23009 1.00133 1.00341 0.95291 1.21460 0.92145 0.84160 0.97534 1.44476 1.50486 1.17566 1.18779 1.18965 1.07648 0.91653 1.18084 0.90665 1.24918 0.96697 0.98356 0.99830 1.69932 1.20111 1.37596 1.28421 0.86150 0.77593 0.83795 0.78407 1.21512 1.21563 1.20513 1.19230 0.96620 0.94172 0.94485 1.20917 0.98259 0.93525 0.95491 1.21071 0.98140 1.01218 0.93966 1.17705 1.01045 0.90023 0.86784 1.91518 1.87604 1.81457 1.50431 1.17554 0.97392 0.89819 0.90907 1.91520 1.72309 1.80537 1.66601 1.20908 0.98805 1.01300 0.92729 0.91542 0.91124 0.91144 0.77103 0.91476 0.91581 0.91825 0.92436 0.92345 0.92298 0.95595 0.90963 0.93556 0.84274 0.83619 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.90 37.16 0.33 -0.61 16 2 C -0.07 -0.65 2.90 -92.92 -0.27 -0.92 16 3 H 0.11 0.71 7.87 -51.93 -0.41 0.30 16 4 C 0.51 6.81 7.03 -10.99 -0.08 6.73 16 5 O -0.53 -9.57 15.12 5.56 0.08 -9.49 16 6 N -0.72 -9.38 5.23 -60.29 -0.32 -9.70 16 7 C 0.11 1.96 5.09 -4.04 -0.02 1.94 16 8 C 0.15 2.82 3.20 -66.96 -0.21 2.61 16 9 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 10 C -0.13 -1.96 6.16 -24.90 -0.15 -2.12 16 11 C -0.15 -2.62 7.08 -24.59 -0.17 -2.79 16 12 C 0.17 3.98 5.42 -2.53 -0.01 3.97 16 13 N -0.59 -14.12 3.13 -162.58 -0.51 -14.63 16 14 C -0.24 -6.27 9.74 -15.06 -0.15 -6.42 16 15 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 16 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16 17 N -0.91 -26.23 10.58 55.49 0.59 -25.65 16 18 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.04 -0.45 4.39 -104.63 -0.46 -0.90 16 23 C -0.06 -0.66 7.93 -39.58 -0.31 -0.98 16 24 C -0.13 -1.27 10.02 -39.53 -0.40 -1.66 16 25 C 0.06 0.74 7.31 -39.36 -0.29 0.45 16 26 F -0.13 -1.60 17.18 2.25 0.04 -1.57 16 27 C 0.06 0.71 7.31 -39.36 -0.29 0.43 16 28 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16 29 C -0.12 -1.15 9.65 -39.53 -0.38 -1.53 16 30 H 0.07 0.48 7.37 -51.92 -0.38 0.10 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16 33 H 0.40 3.87 7.80 -40.82 -0.32 3.55 16 34 H 0.07 1.39 7.88 -51.93 -0.41 0.98 16 35 H 0.07 1.36 8.04 -51.93 -0.42 0.95 16 36 H 0.06 1.00 7.79 -51.93 -0.40 0.59 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 41 H 0.07 1.88 6.93 -51.93 -0.36 1.52 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 43 H 0.14 1.39 7.51 -52.48 -0.39 1.00 16 44 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.15 1.07 7.94 -52.48 -0.42 0.65 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -32.01 376.57 -8.79 -40.80 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.41 Total: 1.31 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -2.96 Total: -1.92 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.24 Total: -49.97 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.01 -8.79 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267280738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.130 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds