Wall clock time and date at job start Tue Mar 31 2020 21:21:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47376 * 2 1
4 4 C 1.50700 * 109.47344 * 240.00034 * 2 1 3
5 5 O 1.21282 * 120.00055 * 240.00127 * 4 2 1
6 6 N 1.34773 * 119.99995 * 59.99931 * 4 2 1
7 7 C 1.46505 * 119.99975 * 180.02562 * 6 4 2
8 8 C 1.53004 * 109.47032 * 185.65894 * 7 6 4
9 9 H 1.08997 * 109.99808 * 304.84088 * 8 7 6
10 10 C 1.54314 * 109.77084 * 65.99646 * 8 7 6
11 11 C 1.55156 * 102.85883 * 141.88487 * 10 8 7
12 12 C 1.54901 * 101.58473 * 324.29763 * 11 10 8
13 13 N 1.47019 * 109.88010 * 183.74494 * 8 7 6
14 14 C 1.36940 * 125.64992 * 61.67820 * 13 8 7
15 15 H 1.07991 * 119.99843 * 14.39745 * 14 13 8
16 16 C 1.38814 * 119.99795 * 194.39257 * 14 13 8
17 17 N 1.31614 * 120.00212 * 0.02562 * 16 14 13
18 18 Si 1.86801 * 119.99711 * 180.02562 * 16 14 13
19 19 H 1.48501 * 109.47014 * 90.00214 * 18 16 14
20 20 H 1.48497 * 109.46981 * 210.00245 * 18 16 14
21 21 H 1.48499 * 109.47266 * 330.00367 * 18 16 14
22 22 C 1.50701 * 109.46992 * 119.99922 * 2 1 3
23 23 C 1.38252 * 119.96510 * 59.72716 * 22 2 1
24 24 C 1.38215 * 120.07034 * 179.76880 * 23 22 2
25 25 C 1.38411 * 120.00126 * 0.50238 * 24 23 22
26 26 F 1.35097 * 120.03781 * 179.72382 * 25 24 23
27 27 C 1.38654 * 119.92516 * 359.75277 * 25 24 23
28 28 F 1.35096 * 120.03117 * 180.02562 * 27 25 24
29 29 C 1.38210 * 119.96403 * 240.00124 * 22 2 1
30 30 H 1.09008 * 109.46968 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47104 * 300.00039 * 1 2 3
32 32 H 1.08997 * 109.46821 * 60.00245 * 1 2 3
33 33 H 0.96998 * 120.00026 * 0.02562 * 6 4 2
34 34 H 1.08999 * 109.46853 * 65.66267 * 7 6 4
35 35 H 1.08995 * 109.47389 * 305.66441 * 7 6 4
36 36 H 1.08996 * 110.92795 * 23.46552 * 10 8 7
37 37 H 1.09007 * 110.58869 * 260.14195 * 10 8 7
38 38 H 1.09002 * 111.00135 * 206.22529 * 11 10 8
39 39 H 1.09004 * 111.00750 * 82.38150 * 11 10 8
40 40 H 1.09001 * 110.37237 * 278.17305 * 12 11 10
41 41 H 1.09007 * 110.46149 * 155.89618 * 12 11 10
42 42 H 0.97003 * 120.00057 * 179.97438 * 17 16 14
43 43 H 1.08005 * 119.96551 * 0.02562 * 23 22 2
44 44 H 1.08006 * 120.00288 * 180.25767 * 24 23 22
45 45 H 1.08004 * 120.00093 * 359.95146 * 29 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2305
5 8 2.7296 -1.6965 -1.1192
6 7 1.7068 -0.2499 -2.4545
7 6 2.1948 -0.9409 -3.6507
8 6 1.8043 -0.1422 -4.8960
9 1 0.7274 0.0257 -4.9087
10 6 2.5490 1.2094 -4.9039
11 6 2.8910 1.4064 -6.4044
12 6 3.1805 -0.0483 -6.8510
13 7 2.2110 -0.8718 -6.1058
14 6 1.7596 -2.1090 -6.4813
15 1 0.8853 -2.5311 -6.0084
16 6 2.4258 -2.8203 -7.4697
17 7 3.4917 -2.3059 -8.0457
18 14 1.8096 -4.5076 -7.9824
19 1 0.8340 -4.3620 -9.0924
20 1 2.9554 -5.3362 -8.4360
21 1 1.1496 -5.1658 -6.8264
22 6 2.0323 -0.7104 1.2305
23 6 1.6932 -2.0324 1.4514
24 6 2.1566 -2.6874 2.5768
25 6 2.9525 -2.0169 3.4893
26 9 3.4012 -2.6549 4.5924
27 6 3.2882 -0.6896 3.2704
28 9 4.0653 -0.0332 4.1594
29 6 2.8268 -0.0380 2.1398
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.1494 0.5389 -2.5435
34 1 1.7506 -1.9349 -3.7027
35 1 3.2799 -1.0300 -3.6016
36 1 3.4580 1.1566 -4.3047
37 1 1.8976 2.0080 -4.5487
38 1 3.7735 2.0349 -6.5246
39 1 2.0416 1.8204 -6.9477
40 1 4.1998 -0.3305 -6.5873
41 1 3.0236 -0.1557 -7.9244
42 1 3.9574 -2.8032 -8.7362
43 1 1.0689 -2.5550 0.7418
44 1 1.8944 -3.7214 2.7462
45 1 3.0880 0.9958 1.9679
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001267280738.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:21:46
Heat of formation + Delta-G solvation = -84.934763 kcal
Electronic energy + Delta-G solvation = -28903.180886 eV
Core-core repulsion = 24556.926448 eV
Total energy + Delta-G solvation = -4346.254438 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-49.65271 -48.73053 -40.39702 -38.76348 -37.61246 -34.41125 -34.12275 -32.51381
-31.16575 -29.88044 -29.36126 -28.47353 -25.37144 -24.71166 -23.82121 -23.52515
-22.06726 -20.40505 -20.01601 -19.47677 -18.17976 -17.69254 -17.30489 -16.80963
-16.51620 -16.25709 -16.01127 -15.33833 -15.14556 -15.09383 -14.70191 -14.55984
-14.31736 -14.13723 -13.91970 -13.54109 -13.43160 -13.13663 -12.99831 -12.61491
-12.20164 -12.10251 -11.94172 -11.90222 -11.81032 -11.66199 -11.37101 -11.29048
-10.98443 -10.81920 -10.29290 -10.14769 -10.00123 -9.89100 -9.77869 -9.64248
-9.26941 -8.83776 -8.73316 -8.61435 -6.88525 -5.80802 -3.17709 0.66199
0.77592 2.74811 3.01264 3.36112 3.42057 3.44093 3.45401 3.57488
4.04851 4.17254 4.32258 4.44928 4.67500 4.75278 4.80902 4.89079
4.96096 5.26741 5.31980 5.35378 5.42969 5.46908 5.50894 5.54730
5.57928 5.65659 5.75892 5.76945 5.85241 6.00088 6.08150 6.12660
6.19191 6.40636 6.48891 6.50970 6.56943 6.64644 6.75608 7.00533
7.47175 7.56672 7.69902 7.75026 8.21216 8.38834 9.13059 9.73836
10.40859 11.31168
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.015599 B = 0.002459 C = 0.002277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1794.527772 B =11384.528963 C =12296.490061
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.074 4.074
3 H 0.108 0.892
4 C 0.510 3.490
5 O -0.533 6.533
6 N -0.720 5.720
7 C 0.109 3.891
8 C 0.152 3.848
9 H 0.037 0.963
10 C -0.126 4.126
11 C -0.149 4.149
12 C 0.172 3.828
13 N -0.589 5.589
14 C -0.235 4.235
15 H 0.076 0.924
16 C -0.001 4.001
17 N -0.915 5.915
18 Si 0.911 3.089
19 H -0.288 1.288
20 H -0.290 1.290
21 H -0.280 1.280
22 C -0.044 4.044
23 C -0.064 4.064
24 C -0.125 4.125
25 C 0.065 3.935
26 F -0.132 7.132
27 C 0.063 3.937
28 F -0.131 7.131
29 C -0.119 4.119
30 H 0.066 0.934
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.395 0.605
34 H 0.067 0.933
35 H 0.066 0.934
36 H 0.063 0.937
37 H 0.057 0.943
38 H 0.058 0.942
39 H 0.058 0.942
40 H 0.026 0.974
41 H 0.072 0.928
42 H 0.254 0.746
43 H 0.139 0.861
44 H 0.146 0.854
45 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.007 8.603 19.084 21.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.095 4.095
3 H 0.126 0.874
4 C 0.294 3.706
5 O -0.410 6.410
6 N -0.371 5.371
7 C -0.016 4.016
8 C 0.044 3.956
9 H 0.055 0.945
10 C -0.164 4.164
11 C -0.188 4.188
12 C 0.047 3.953
13 N -0.313 5.313
14 C -0.363 4.363
15 H 0.093 0.907
16 C -0.198 4.198
17 N -0.561 5.561
18 Si 0.741 3.259
19 H -0.215 1.215
20 H -0.216 1.216
21 H -0.205 1.205
22 C -0.045 4.045
23 C -0.082 4.082
24 C -0.144 4.144
25 C 0.044 3.956
26 F -0.110 7.110
27 C 0.043 3.957
28 F -0.110 7.110
29 C -0.137 4.137
30 H 0.085 0.915
31 H 0.089 0.911
32 H 0.089 0.911
33 H 0.229 0.771
34 H 0.085 0.915
35 H 0.084 0.916
36 H 0.082 0.918
37 H 0.076 0.924
38 H 0.077 0.923
39 H 0.077 0.923
40 H 0.044 0.956
41 H 0.090 0.910
42 H 0.064 0.936
43 H 0.157 0.843
44 H 0.164 0.836
45 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -5.366 7.693 19.020 21.207
hybrid contribution -0.106 -0.593 0.042 0.604
sum -5.472 7.100 19.062 21.064
Atomic orbital electron populations
1.21821 0.91503 1.03454 1.03198 1.20342 0.98063 1.00444 0.90669
0.87384 1.20288 0.80865 0.84957 0.84447 1.90751 1.37525 1.26111
1.86571 1.46117 1.53112 1.31837 1.05989 1.22261 0.99730 0.96951
0.82660 1.21125 0.96639 0.90897 0.86969 0.94531 1.22606 0.99703
0.96373 0.97697 1.23009 1.00133 1.00341 0.95291 1.21460 0.92145
0.84160 0.97534 1.44476 1.50486 1.17566 1.18779 1.18965 1.07648
0.91653 1.18084 0.90665 1.24918 0.96697 0.98356 0.99830 1.69932
1.20111 1.37596 1.28421 0.86150 0.77593 0.83795 0.78407 1.21512
1.21563 1.20513 1.19230 0.96620 0.94172 0.94485 1.20917 0.98259
0.93525 0.95491 1.21071 0.98140 1.01218 0.93966 1.17705 1.01045
0.90023 0.86784 1.91518 1.87604 1.81457 1.50431 1.17554 0.97392
0.89819 0.90907 1.91520 1.72309 1.80537 1.66601 1.20908 0.98805
1.01300 0.92729 0.91542 0.91124 0.91144 0.77103 0.91476 0.91581
0.91825 0.92436 0.92345 0.92298 0.95595 0.90963 0.93556 0.84274
0.83619 0.83699
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.94 8.90 37.16 0.33 -0.61 16
2 C -0.07 -0.65 2.90 -92.92 -0.27 -0.92 16
3 H 0.11 0.71 7.87 -51.93 -0.41 0.30 16
4 C 0.51 6.81 7.03 -10.99 -0.08 6.73 16
5 O -0.53 -9.57 15.12 5.56 0.08 -9.49 16
6 N -0.72 -9.38 5.23 -60.29 -0.32 -9.70 16
7 C 0.11 1.96 5.09 -4.04 -0.02 1.94 16
8 C 0.15 2.82 3.20 -66.96 -0.21 2.61 16
9 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
10 C -0.13 -1.96 6.16 -24.90 -0.15 -2.12 16
11 C -0.15 -2.62 7.08 -24.59 -0.17 -2.79 16
12 C 0.17 3.98 5.42 -2.53 -0.01 3.97 16
13 N -0.59 -14.12 3.13 -162.58 -0.51 -14.63 16
14 C -0.24 -6.27 9.74 -15.06 -0.15 -6.42 16
15 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16
16 C 0.00 -0.02 5.47 -17.43 -0.10 -0.11 16
17 N -0.91 -26.23 10.58 55.49 0.59 -25.65 16
18 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16
19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
22 C -0.04 -0.45 4.39 -104.63 -0.46 -0.90 16
23 C -0.06 -0.66 7.93 -39.58 -0.31 -0.98 16
24 C -0.13 -1.27 10.02 -39.53 -0.40 -1.66 16
25 C 0.06 0.74 7.31 -39.36 -0.29 0.45 16
26 F -0.13 -1.60 17.18 2.25 0.04 -1.57 16
27 C 0.06 0.71 7.31 -39.36 -0.29 0.43 16
28 F -0.13 -1.57 17.18 2.25 0.04 -1.53 16
29 C -0.12 -1.15 9.65 -39.53 -0.38 -1.53 16
30 H 0.07 0.48 7.37 -51.92 -0.38 0.10 16
31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.39 7.56 -51.93 -0.39 0.00 16
33 H 0.40 3.87 7.80 -40.82 -0.32 3.55 16
34 H 0.07 1.39 7.88 -51.93 -0.41 0.98 16
35 H 0.07 1.36 8.04 -51.93 -0.42 0.95 16
36 H 0.06 1.00 7.79 -51.93 -0.40 0.59 16
37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
40 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16
41 H 0.07 1.88 6.93 -51.93 -0.36 1.52 16
42 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16
43 H 0.14 1.39 7.51 -52.48 -0.39 1.00 16
44 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16
45 H 0.15 1.07 7.94 -52.48 -0.42 0.65 16
LS Contribution 376.57 15.07 5.67 5.67
Total: -1.00 -32.01 376.57 -8.79 -40.80
By element:
Atomic # 1 Polarization: 7.71 SS G_CDS: -6.41 Total: 1.31 kcal
Atomic # 6 Polarization: 1.05 SS G_CDS: -2.96 Total: -1.92 kcal
Atomic # 7 Polarization: -49.73 SS G_CDS: -0.24 Total: -49.97 kcal
Atomic # 8 Polarization: -9.57 SS G_CDS: 0.08 Total: -9.49 kcal
Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -32.01 -8.79 -40.80 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267280738.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.130 kcal
(2) G-P(sol) polarization free energy of solvation -32.013 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) -84.935 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds