Wall clock time and date at job start Tue Mar 31 2020 21:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47376 * 2 1 4 4 C 1.50700 * 109.47344 * 240.00034 * 2 1 3 5 5 O 1.21282 * 120.00055 * 240.00127 * 4 2 1 6 6 N 1.34773 * 119.99995 * 59.99931 * 4 2 1 7 7 C 1.46505 * 119.99975 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.47032 * 185.65894 * 7 6 4 9 9 H 1.08997 * 109.99808 * 304.84088 * 8 7 6 10 10 C 1.54314 * 109.77084 * 65.99646 * 8 7 6 11 11 C 1.55156 * 102.85883 * 141.88487 * 10 8 7 12 12 C 1.54901 * 101.58473 * 324.29763 * 11 10 8 13 13 N 1.47019 * 109.88010 * 183.74494 * 8 7 6 14 14 C 1.36940 * 125.64992 * 61.67820 * 13 8 7 15 15 H 1.07991 * 119.99843 * 14.39745 * 14 13 8 16 16 C 1.38814 * 119.99795 * 194.39257 * 14 13 8 17 17 N 1.31614 * 120.00212 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99711 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47014 * 90.00214 * 18 16 14 20 20 H 1.48497 * 109.46981 * 210.00245 * 18 16 14 21 21 H 1.48499 * 109.47266 * 330.00367 * 18 16 14 22 22 C 1.50701 * 109.46992 * 119.99922 * 2 1 3 23 23 C 1.38252 * 119.96510 * 59.72716 * 22 2 1 24 24 C 1.38215 * 120.07034 * 179.76880 * 23 22 2 25 25 C 1.38411 * 120.00126 * 0.50238 * 24 23 22 26 26 F 1.35097 * 120.03781 * 179.72382 * 25 24 23 27 27 C 1.38654 * 119.92516 * 359.75277 * 25 24 23 28 28 F 1.35096 * 120.03117 * 180.02562 * 27 25 24 29 29 C 1.38210 * 119.96403 * 240.00124 * 22 2 1 30 30 H 1.09008 * 109.46968 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47104 * 300.00039 * 1 2 3 32 32 H 1.08997 * 109.46821 * 60.00245 * 1 2 3 33 33 H 0.96998 * 120.00026 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46853 * 65.66267 * 7 6 4 35 35 H 1.08995 * 109.47389 * 305.66441 * 7 6 4 36 36 H 1.08996 * 110.92795 * 23.46552 * 10 8 7 37 37 H 1.09007 * 110.58869 * 260.14195 * 10 8 7 38 38 H 1.09002 * 111.00135 * 206.22529 * 11 10 8 39 39 H 1.09004 * 111.00750 * 82.38150 * 11 10 8 40 40 H 1.09001 * 110.37237 * 278.17305 * 12 11 10 41 41 H 1.09007 * 110.46149 * 155.89618 * 12 11 10 42 42 H 0.97003 * 120.00057 * 179.97438 * 17 16 14 43 43 H 1.08005 * 119.96551 * 0.02562 * 23 22 2 44 44 H 1.08006 * 120.00288 * 180.25767 * 24 23 22 45 45 H 1.08004 * 120.00093 * 359.95146 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2499 -2.4545 7 6 2.1948 -0.9409 -3.6507 8 6 1.8043 -0.1422 -4.8960 9 1 0.7274 0.0257 -4.9087 10 6 2.5490 1.2094 -4.9039 11 6 2.8910 1.4064 -6.4044 12 6 3.1805 -0.0483 -6.8510 13 7 2.2110 -0.8718 -6.1058 14 6 1.7596 -2.1090 -6.4813 15 1 0.8853 -2.5311 -6.0084 16 6 2.4258 -2.8203 -7.4697 17 7 3.4917 -2.3059 -8.0457 18 14 1.8096 -4.5076 -7.9824 19 1 0.8340 -4.3620 -9.0924 20 1 2.9554 -5.3362 -8.4360 21 1 1.1496 -5.1658 -6.8264 22 6 2.0323 -0.7104 1.2305 23 6 1.6932 -2.0324 1.4514 24 6 2.1566 -2.6874 2.5768 25 6 2.9525 -2.0169 3.4893 26 9 3.4012 -2.6549 4.5924 27 6 3.2882 -0.6896 3.2704 28 9 4.0653 -0.0332 4.1594 29 6 2.8268 -0.0380 2.1398 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1494 0.5389 -2.5435 34 1 1.7506 -1.9349 -3.7027 35 1 3.2799 -1.0300 -3.6016 36 1 3.4580 1.1566 -4.3047 37 1 1.8976 2.0080 -4.5487 38 1 3.7735 2.0349 -6.5246 39 1 2.0416 1.8204 -6.9477 40 1 4.1998 -0.3305 -6.5873 41 1 3.0236 -0.1557 -7.9244 42 1 3.9574 -2.8032 -8.7362 43 1 1.0689 -2.5550 0.7418 44 1 1.8944 -3.7214 2.7462 45 1 3.0880 0.9958 1.9679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267280738.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:45 Heat of formation + Delta-G solvation = -104.068420 kcal Electronic energy + Delta-G solvation = -28904.010583 eV Core-core repulsion = 24556.926448 eV Total energy + Delta-G solvation = -4347.084136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.53576 -49.62046 -41.37042 -39.84265 -39.06477 -35.71947 -35.01920 -34.34563 -31.94327 -31.43267 -30.63698 -29.66654 -26.77436 -26.07656 -25.11779 -24.31113 -23.04767 -21.99333 -21.27754 -20.86044 -19.06870 -18.88545 -18.35830 -18.12261 -17.46054 -17.34650 -17.17251 -16.68827 -16.37449 -16.05086 -16.01925 -15.66323 -15.56396 -15.39724 -14.95966 -14.72644 -14.62744 -14.05376 -13.94077 -13.78120 -13.64380 -13.38192 -13.30646 -12.97574 -12.93499 -12.85707 -12.64185 -12.58503 -12.43564 -12.03494 -12.00158 -11.84069 -11.68692 -11.46663 -11.37275 -10.78675 -10.66737 -10.07977 -9.99306 -9.67385 -8.84432 -7.87982 -5.25107 -0.16476 -0.00020 1.44413 1.46523 1.54465 1.70247 2.08405 2.44058 2.54354 2.75908 3.24536 3.32360 3.38941 3.54888 3.72758 3.88495 3.98851 4.03087 4.05450 4.11028 4.22218 4.28373 4.30059 4.50010 4.56950 4.69368 4.76817 4.77598 4.82546 4.92573 4.96701 5.00551 5.03210 5.05419 5.18310 5.24895 5.31553 5.39308 5.43226 5.48959 5.62548 5.68013 5.70893 5.79565 6.24125 6.66647 7.09792 7.35816 7.77877 8.43445 9.23086 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015599 B = 0.002459 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.527772 B =11384.528963 C =12296.490061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 H 0.144 0.856 4 C 0.508 3.492 5 O -0.584 6.584 6 N -0.703 5.703 7 C 0.131 3.869 8 C 0.148 3.852 9 H 0.056 0.944 10 C -0.112 4.112 11 C -0.135 4.135 12 C 0.173 3.827 13 N -0.612 5.612 14 C -0.236 4.236 15 H 0.079 0.921 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.970 3.030 19 H -0.282 1.282 20 H -0.298 1.298 21 H -0.271 1.271 22 C -0.051 4.051 23 C -0.072 4.072 24 C -0.127 4.127 25 C 0.047 3.953 26 F -0.141 7.141 27 C 0.048 3.952 28 F -0.139 7.139 29 C -0.111 4.111 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.417 0.583 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.071 0.929 40 H -0.011 1.011 41 H 0.034 0.966 42 H 0.247 0.753 43 H 0.139 0.861 44 H 0.161 0.839 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 11.165 20.436 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 H 0.162 0.838 4 C 0.295 3.705 5 O -0.464 6.464 6 N -0.356 5.356 7 C 0.004 3.996 8 C 0.041 3.959 9 H 0.073 0.927 10 C -0.149 4.149 11 C -0.173 4.173 12 C 0.048 3.952 13 N -0.336 5.336 14 C -0.366 4.366 15 H 0.096 0.904 16 C -0.255 4.255 17 N -0.595 5.595 18 Si 0.799 3.201 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.196 1.196 22 C -0.051 4.051 23 C -0.090 4.090 24 C -0.145 4.145 25 C 0.027 3.973 26 F -0.120 7.120 27 C 0.028 3.972 28 F -0.117 7.117 29 C -0.129 4.129 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.255 0.745 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.007 0.993 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.157 0.843 44 H 0.178 0.822 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.401 10.308 20.412 24.035 hybrid contribution 0.486 -1.391 -0.330 1.510 sum -6.914 8.917 20.082 23.035 Atomic orbital electron populations 1.21880 0.89384 1.03460 1.05128 1.20371 0.99553 1.01104 0.87047 0.83807 1.21139 0.79600 0.84270 0.85459 1.90743 1.39809 1.28555 1.87307 1.45796 1.53139 1.32148 1.04525 1.21623 0.97367 0.95833 0.84792 1.21363 0.97870 0.91853 0.84850 0.92676 1.22602 1.00369 0.95694 0.96257 1.22873 1.01635 0.96194 0.96602 1.21263 0.90333 0.88129 0.95520 1.44749 1.50295 1.17272 1.21325 1.19300 1.07383 0.92722 1.17176 0.90362 1.25679 0.97403 1.01730 1.00705 1.70141 1.21560 1.38600 1.29194 0.85204 0.76777 0.79940 0.78205 1.20892 1.22436 1.19631 1.19453 0.96527 0.94129 0.95031 1.21070 0.98394 0.94127 0.95445 1.21244 0.97678 1.01974 0.93624 1.17953 1.01882 0.90498 0.86987 1.91488 1.87839 1.81693 1.50958 1.17801 0.97891 0.89930 0.91553 1.91497 1.72612 1.80627 1.66984 1.21166 0.97664 1.02467 0.91641 0.92602 0.88944 0.89482 0.74534 0.94954 0.94930 0.91778 0.87335 0.90142 0.91046 0.99307 0.94770 0.94420 0.84279 0.82154 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.90 71.98 0.64 -0.63 16 2 C -0.06 -0.83 2.90 -12.29 -0.04 -0.86 16 3 H 0.14 1.05 7.87 -2.38 -0.02 1.04 16 4 C 0.51 12.48 7.03 87.66 0.62 13.10 16 5 O -0.58 -20.81 15.12 -3.04 -0.05 -20.86 16 6 N -0.70 -16.45 5.23 -463.05 -2.42 -18.88 16 7 C 0.13 4.63 5.09 86.38 0.44 5.07 16 8 C 0.15 5.21 3.20 45.34 0.15 5.35 16 9 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 10 C -0.11 -3.06 6.16 31.78 0.20 -2.86 16 11 C -0.13 -4.40 7.08 31.98 0.23 -4.18 16 12 C 0.17 8.20 5.42 86.85 0.47 8.67 16 13 N -0.61 -29.64 3.13 -668.28 -2.09 -31.73 16 14 C -0.24 -12.85 9.74 84.03 0.82 -12.04 16 15 H 0.08 4.09 7.83 -2.92 -0.02 4.07 16 16 C -0.06 -3.48 5.47 84.86 0.46 -3.01 16 17 N -0.95 -56.80 10.58 21.65 0.23 -56.57 16 18 Si 0.97 45.79 29.55 68.60 2.03 47.82 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C -0.05 -0.89 4.39 -19.87 -0.09 -0.98 16 23 C -0.07 -1.42 7.93 22.27 0.18 -1.24 16 24 C -0.13 -2.49 10.02 22.31 0.22 -2.27 16 25 C 0.05 1.05 7.31 22.41 0.16 1.22 16 26 F -0.14 -3.47 17.18 44.97 0.77 -2.69 16 27 C 0.05 1.03 7.31 22.41 0.16 1.20 16 28 F -0.14 -3.21 17.18 44.97 0.77 -2.43 16 29 C -0.11 -1.87 9.65 22.30 0.22 -1.65 16 30 H 0.05 0.65 7.37 -2.38 -0.02 0.63 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 0.52 7.56 -2.39 -0.02 0.50 16 33 H 0.42 6.19 7.80 -92.71 -0.72 5.46 16 34 H 0.03 1.36 7.88 -2.39 -0.02 1.34 16 35 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16 36 H 0.06 1.79 7.79 -2.39 -0.02 1.77 16 37 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 40 H -0.01 -0.60 8.06 -2.39 -0.02 -0.62 16 41 H 0.03 1.85 6.93 -2.38 -0.02 1.83 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.14 2.69 7.51 -2.91 -0.02 2.67 16 44 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.17 1.84 7.94 -2.91 -0.02 1.82 16 Total: -1.00 -75.52 376.57 4.37 -71.15 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.29 Total: 9.33 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 4.84 Total: 4.87 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -4.28 Total: -107.18 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 1.55 Total: -5.13 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -75.52 4.37 -71.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267280738.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.917 kcal (2) G-P(sol) polarization free energy of solvation -75.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds