Wall clock time and date at job start Tue Mar 31 2020 21:21:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09004 * 109.47376 * 2 1
4 4 C 1.50700 * 109.47344 * 240.00034 * 2 1 3
5 5 O 1.21282 * 120.00055 * 240.00127 * 4 2 1
6 6 N 1.34773 * 119.99995 * 59.99931 * 4 2 1
7 7 C 1.46505 * 119.99975 * 180.02562 * 6 4 2
8 8 C 1.53004 * 109.47032 * 185.65894 * 7 6 4
9 9 H 1.08997 * 109.99808 * 304.84088 * 8 7 6
10 10 C 1.54314 * 109.77084 * 65.99646 * 8 7 6
11 11 C 1.55156 * 102.85883 * 141.88487 * 10 8 7
12 12 C 1.54901 * 101.58473 * 324.29763 * 11 10 8
13 13 N 1.47019 * 109.88010 * 183.74494 * 8 7 6
14 14 C 1.36940 * 125.64992 * 61.67820 * 13 8 7
15 15 H 1.07991 * 119.99843 * 14.39745 * 14 13 8
16 16 C 1.38814 * 119.99795 * 194.39257 * 14 13 8
17 17 N 1.31614 * 120.00212 * 0.02562 * 16 14 13
18 18 Si 1.86801 * 119.99711 * 180.02562 * 16 14 13
19 19 H 1.48501 * 109.47014 * 90.00214 * 18 16 14
20 20 H 1.48497 * 109.46981 * 210.00245 * 18 16 14
21 21 H 1.48499 * 109.47266 * 330.00367 * 18 16 14
22 22 C 1.50701 * 109.46992 * 119.99922 * 2 1 3
23 23 C 1.38252 * 119.96510 * 59.72716 * 22 2 1
24 24 C 1.38215 * 120.07034 * 179.76880 * 23 22 2
25 25 C 1.38411 * 120.00126 * 0.50238 * 24 23 22
26 26 F 1.35097 * 120.03781 * 179.72382 * 25 24 23
27 27 C 1.38654 * 119.92516 * 359.75277 * 25 24 23
28 28 F 1.35096 * 120.03117 * 180.02562 * 27 25 24
29 29 C 1.38210 * 119.96403 * 240.00124 * 22 2 1
30 30 H 1.09008 * 109.46968 * 179.97438 * 1 2 3
31 31 H 1.08998 * 109.47104 * 300.00039 * 1 2 3
32 32 H 1.08997 * 109.46821 * 60.00245 * 1 2 3
33 33 H 0.96998 * 120.00026 * 0.02562 * 6 4 2
34 34 H 1.08999 * 109.46853 * 65.66267 * 7 6 4
35 35 H 1.08995 * 109.47389 * 305.66441 * 7 6 4
36 36 H 1.08996 * 110.92795 * 23.46552 * 10 8 7
37 37 H 1.09007 * 110.58869 * 260.14195 * 10 8 7
38 38 H 1.09002 * 111.00135 * 206.22529 * 11 10 8
39 39 H 1.09004 * 111.00750 * 82.38150 * 11 10 8
40 40 H 1.09001 * 110.37237 * 278.17305 * 12 11 10
41 41 H 1.09007 * 110.46149 * 155.89618 * 12 11 10
42 42 H 0.97003 * 120.00057 * 179.97438 * 17 16 14
43 43 H 1.08005 * 119.96551 * 0.02562 * 23 22 2
44 44 H 1.08006 * 120.00288 * 180.25767 * 24 23 22
45 45 H 1.08004 * 120.00093 * 359.95146 * 29 22 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2305
5 8 2.7296 -1.6965 -1.1192
6 7 1.7068 -0.2499 -2.4545
7 6 2.1948 -0.9409 -3.6507
8 6 1.8043 -0.1422 -4.8960
9 1 0.7274 0.0257 -4.9087
10 6 2.5490 1.2094 -4.9039
11 6 2.8910 1.4064 -6.4044
12 6 3.1805 -0.0483 -6.8510
13 7 2.2110 -0.8718 -6.1058
14 6 1.7596 -2.1090 -6.4813
15 1 0.8853 -2.5311 -6.0084
16 6 2.4258 -2.8203 -7.4697
17 7 3.4917 -2.3059 -8.0457
18 14 1.8096 -4.5076 -7.9824
19 1 0.8340 -4.3620 -9.0924
20 1 2.9554 -5.3362 -8.4360
21 1 1.1496 -5.1658 -6.8264
22 6 2.0323 -0.7104 1.2305
23 6 1.6932 -2.0324 1.4514
24 6 2.1566 -2.6874 2.5768
25 6 2.9525 -2.0169 3.4893
26 9 3.4012 -2.6549 4.5924
27 6 3.2882 -0.6896 3.2704
28 9 4.0653 -0.0332 4.1594
29 6 2.8268 -0.0380 2.1398
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.1494 0.5389 -2.5435
34 1 1.7506 -1.9349 -3.7027
35 1 3.2799 -1.0300 -3.6016
36 1 3.4580 1.1566 -4.3047
37 1 1.8976 2.0080 -4.5487
38 1 3.7735 2.0349 -6.5246
39 1 2.0416 1.8204 -6.9477
40 1 4.1998 -0.3305 -6.5873
41 1 3.0236 -0.1557 -7.9244
42 1 3.9574 -2.8032 -8.7362
43 1 1.0689 -2.5550 0.7418
44 1 1.8944 -3.7214 2.7462
45 1 3.0880 0.9958 1.9679
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001267280738.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:21:45
Heat of formation + Delta-G solvation = -104.068420 kcal
Electronic energy + Delta-G solvation = -28904.010583 eV
Core-core repulsion = 24556.926448 eV
Total energy + Delta-G solvation = -4347.084136 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-50.53576 -49.62046 -41.37042 -39.84265 -39.06477 -35.71947 -35.01920 -34.34563
-31.94327 -31.43267 -30.63698 -29.66654 -26.77436 -26.07656 -25.11779 -24.31113
-23.04767 -21.99333 -21.27754 -20.86044 -19.06870 -18.88545 -18.35830 -18.12261
-17.46054 -17.34650 -17.17251 -16.68827 -16.37449 -16.05086 -16.01925 -15.66323
-15.56396 -15.39724 -14.95966 -14.72644 -14.62744 -14.05376 -13.94077 -13.78120
-13.64380 -13.38192 -13.30646 -12.97574 -12.93499 -12.85707 -12.64185 -12.58503
-12.43564 -12.03494 -12.00158 -11.84069 -11.68692 -11.46663 -11.37275 -10.78675
-10.66737 -10.07977 -9.99306 -9.67385 -8.84432 -7.87982 -5.25107 -0.16476
-0.00020 1.44413 1.46523 1.54465 1.70247 2.08405 2.44058 2.54354
2.75908 3.24536 3.32360 3.38941 3.54888 3.72758 3.88495 3.98851
4.03087 4.05450 4.11028 4.22218 4.28373 4.30059 4.50010 4.56950
4.69368 4.76817 4.77598 4.82546 4.92573 4.96701 5.00551 5.03210
5.05419 5.18310 5.24895 5.31553 5.39308 5.43226 5.48959 5.62548
5.68013 5.70893 5.79565 6.24125 6.66647 7.09792 7.35816 7.77877
8.43445 9.23086
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.015599 B = 0.002459 C = 0.002277
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1794.527772 B =11384.528963 C =12296.490061
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.060 4.060
3 H 0.144 0.856
4 C 0.508 3.492
5 O -0.584 6.584
6 N -0.703 5.703
7 C 0.131 3.869
8 C 0.148 3.852
9 H 0.056 0.944
10 C -0.112 4.112
11 C -0.135 4.135
12 C 0.173 3.827
13 N -0.612 5.612
14 C -0.236 4.236
15 H 0.079 0.921
16 C -0.062 4.062
17 N -0.947 5.947
18 Si 0.970 3.030
19 H -0.282 1.282
20 H -0.298 1.298
21 H -0.271 1.271
22 C -0.051 4.051
23 C -0.072 4.072
24 C -0.127 4.127
25 C 0.047 3.953
26 F -0.141 7.141
27 C 0.048 3.952
28 F -0.139 7.139
29 C -0.111 4.111
30 H 0.055 0.945
31 H 0.092 0.908
32 H 0.086 0.914
33 H 0.417 0.583
34 H 0.032 0.968
35 H 0.032 0.968
36 H 0.063 0.937
37 H 0.108 0.892
38 H 0.080 0.920
39 H 0.071 0.929
40 H -0.011 1.011
41 H 0.034 0.966
42 H 0.247 0.753
43 H 0.139 0.861
44 H 0.161 0.839
45 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.988 11.165 20.436 24.619
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.081 4.081
3 H 0.162 0.838
4 C 0.295 3.705
5 O -0.464 6.464
6 N -0.356 5.356
7 C 0.004 3.996
8 C 0.041 3.959
9 H 0.073 0.927
10 C -0.149 4.149
11 C -0.173 4.173
12 C 0.048 3.952
13 N -0.336 5.336
14 C -0.366 4.366
15 H 0.096 0.904
16 C -0.255 4.255
17 N -0.595 5.595
18 Si 0.799 3.201
19 H -0.209 1.209
20 H -0.224 1.224
21 H -0.196 1.196
22 C -0.051 4.051
23 C -0.090 4.090
24 C -0.145 4.145
25 C 0.027 3.973
26 F -0.120 7.120
27 C 0.028 3.972
28 F -0.117 7.117
29 C -0.129 4.129
30 H 0.074 0.926
31 H 0.111 0.889
32 H 0.105 0.895
33 H 0.255 0.745
34 H 0.050 0.950
35 H 0.051 0.949
36 H 0.082 0.918
37 H 0.127 0.873
38 H 0.099 0.901
39 H 0.090 0.910
40 H 0.007 0.993
41 H 0.052 0.948
42 H 0.056 0.944
43 H 0.157 0.843
44 H 0.178 0.822
45 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -7.401 10.308 20.412 24.035
hybrid contribution 0.486 -1.391 -0.330 1.510
sum -6.914 8.917 20.082 23.035
Atomic orbital electron populations
1.21880 0.89384 1.03460 1.05128 1.20371 0.99553 1.01104 0.87047
0.83807 1.21139 0.79600 0.84270 0.85459 1.90743 1.39809 1.28555
1.87307 1.45796 1.53139 1.32148 1.04525 1.21623 0.97367 0.95833
0.84792 1.21363 0.97870 0.91853 0.84850 0.92676 1.22602 1.00369
0.95694 0.96257 1.22873 1.01635 0.96194 0.96602 1.21263 0.90333
0.88129 0.95520 1.44749 1.50295 1.17272 1.21325 1.19300 1.07383
0.92722 1.17176 0.90362 1.25679 0.97403 1.01730 1.00705 1.70141
1.21560 1.38600 1.29194 0.85204 0.76777 0.79940 0.78205 1.20892
1.22436 1.19631 1.19453 0.96527 0.94129 0.95031 1.21070 0.98394
0.94127 0.95445 1.21244 0.97678 1.01974 0.93624 1.17953 1.01882
0.90498 0.86987 1.91488 1.87839 1.81693 1.50958 1.17801 0.97891
0.89930 0.91553 1.91497 1.72612 1.80627 1.66984 1.21166 0.97664
1.02467 0.91641 0.92602 0.88944 0.89482 0.74534 0.94954 0.94930
0.91778 0.87335 0.90142 0.91046 0.99307 0.94770 0.94420 0.84279
0.82154 0.80894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.27 8.90 71.98 0.64 -0.63 16
2 C -0.06 -0.83 2.90 -12.29 -0.04 -0.86 16
3 H 0.14 1.05 7.87 -2.38 -0.02 1.04 16
4 C 0.51 12.48 7.03 87.66 0.62 13.10 16
5 O -0.58 -20.81 15.12 -3.04 -0.05 -20.86 16
6 N -0.70 -16.45 5.23 -463.05 -2.42 -18.88 16
7 C 0.13 4.63 5.09 86.38 0.44 5.07 16
8 C 0.15 5.21 3.20 45.34 0.15 5.35 16
9 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
10 C -0.11 -3.06 6.16 31.78 0.20 -2.86 16
11 C -0.13 -4.40 7.08 31.98 0.23 -4.18 16
12 C 0.17 8.20 5.42 86.85 0.47 8.67 16
13 N -0.61 -29.64 3.13 -668.28 -2.09 -31.73 16
14 C -0.24 -12.85 9.74 84.03 0.82 -12.04 16
15 H 0.08 4.09 7.83 -2.92 -0.02 4.07 16
16 C -0.06 -3.48 5.47 84.86 0.46 -3.01 16
17 N -0.95 -56.80 10.58 21.65 0.23 -56.57 16
18 Si 0.97 45.79 29.55 68.60 2.03 47.82 16
19 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
20 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16
21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
22 C -0.05 -0.89 4.39 -19.87 -0.09 -0.98 16
23 C -0.07 -1.42 7.93 22.27 0.18 -1.24 16
24 C -0.13 -2.49 10.02 22.31 0.22 -2.27 16
25 C 0.05 1.05 7.31 22.41 0.16 1.22 16
26 F -0.14 -3.47 17.18 44.97 0.77 -2.69 16
27 C 0.05 1.03 7.31 22.41 0.16 1.20 16
28 F -0.14 -3.21 17.18 44.97 0.77 -2.43 16
29 C -0.11 -1.87 9.65 22.30 0.22 -1.65 16
30 H 0.05 0.65 7.37 -2.38 -0.02 0.63 16
31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16
32 H 0.09 0.52 7.56 -2.39 -0.02 0.50 16
33 H 0.42 6.19 7.80 -92.71 -0.72 5.46 16
34 H 0.03 1.36 7.88 -2.39 -0.02 1.34 16
35 H 0.03 1.37 8.04 -2.39 -0.02 1.35 16
36 H 0.06 1.79 7.79 -2.39 -0.02 1.77 16
37 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16
38 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
39 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16
40 H -0.01 -0.60 8.06 -2.39 -0.02 -0.62 16
41 H 0.03 1.85 6.93 -2.38 -0.02 1.83 16
42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16
43 H 0.14 2.69 7.51 -2.91 -0.02 2.67 16
44 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16
45 H 0.17 1.84 7.94 -2.91 -0.02 1.82 16
Total: -1.00 -75.52 376.57 4.37 -71.15
By element:
Atomic # 1 Polarization: 9.03 SS G_CDS: 0.29 Total: 9.33 kcal
Atomic # 6 Polarization: 0.03 SS G_CDS: 4.84 Total: 4.87 kcal
Atomic # 7 Polarization: -102.89 SS G_CDS: -4.28 Total: -107.18 kcal
Atomic # 8 Polarization: -20.81 SS G_CDS: -0.05 Total: -20.86 kcal
Atomic # 9 Polarization: -6.67 SS G_CDS: 1.55 Total: -5.13 kcal
Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal
Total: -75.52 4.37 -71.15 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001267280738.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.917 kcal
(2) G-P(sol) polarization free energy of solvation -75.522 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.068 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds