Wall clock time and date at job start Tue Mar 31 2020 21:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 C 1.50695 * 109.47416 * 120.00030 * 2 1 3 5 5 O 1.21285 * 120.00288 * 119.99410 * 4 2 1 6 6 N 1.34777 * 119.99940 * 300.00165 * 4 2 1 7 7 C 1.46503 * 120.00165 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47237 * 181.91360 * 7 6 4 9 9 H 1.08998 * 109.87363 * 300.02520 * 8 7 6 10 10 C 1.54322 * 109.88188 * 179.00442 * 8 7 6 11 11 C 1.55156 * 102.94208 * 218.39102 * 10 8 7 12 12 C 1.54915 * 101.58049 * 35.50496 * 11 10 8 13 13 N 1.47024 * 109.87902 * 61.19737 * 8 7 6 14 14 C 1.36938 * 125.65160 * 298.33689 * 13 8 7 15 15 H 1.07994 * 120.00095 * 133.89052 * 14 13 8 16 16 C 1.38810 * 119.99626 * 313.89031 * 14 13 8 17 17 N 1.31617 * 119.99903 * 169.80632 * 16 14 13 18 18 Si 1.86803 * 120.00246 * 349.80910 * 16 14 13 19 19 H 1.48501 * 109.47086 * 90.93943 * 18 16 14 20 20 H 1.48500 * 109.47055 * 210.93990 * 18 16 14 21 21 H 1.48499 * 109.46926 * 330.93838 * 18 16 14 22 22 C 1.50702 * 109.47057 * 239.99873 * 2 1 3 23 23 C 1.38259 * 119.96334 * 119.99817 * 22 2 1 24 24 C 1.38210 * 120.07188 * 180.02562 * 23 22 2 25 25 C 1.38413 * 119.99740 * 0.02562 * 24 23 22 26 26 F 1.35102 * 120.03235 * 180.02562 * 25 24 23 27 27 C 1.38641 * 119.93131 * 0.02562 * 25 24 23 28 28 F 1.35105 * 120.03690 * 179.97438 * 27 25 24 29 29 C 1.38209 * 119.96675 * 300.00249 * 22 2 1 30 30 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46873 * 300.00028 * 1 2 3 32 32 H 1.08995 * 109.47415 * 59.99791 * 1 2 3 33 33 H 0.97003 * 120.00028 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.47167 * 301.91899 * 7 6 4 35 35 H 1.09007 * 109.46968 * 61.91675 * 7 6 4 36 36 H 1.09008 * 110.71927 * 336.75434 * 10 8 7 37 37 H 1.08996 * 110.72095 * 100.02688 * 10 8 7 38 38 H 1.09004 * 111.00265 * 153.57714 * 11 10 8 39 39 H 1.08994 * 111.00652 * 277.42535 * 11 10 8 40 40 H 1.08998 * 110.36476 * 81.82706 * 12 11 10 41 41 H 1.08998 * 110.36387 * 204.03815 * 12 11 10 42 42 H 0.96998 * 120.00273 * 179.97438 * 17 16 14 43 43 H 1.07996 * 119.96537 * 0.27939 * 23 22 2 44 44 H 1.07997 * 120.00314 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00158 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1947 -0.9408 3.6507 8 6 1.6458 -0.2479 4.8995 9 1 1.9771 0.7903 4.9230 10 6 2.1340 -0.9834 6.1653 11 6 0.8967 -0.9256 7.0997 12 6 -0.2659 -1.0630 6.0852 13 7 0.1768 -0.3073 4.8993 14 6 -0.6444 0.2477 3.9544 15 1 -1.4634 -0.3260 3.5466 16 6 -0.4239 1.5478 3.5208 17 7 -1.0780 2.0135 2.4778 18 14 0.8010 2.6365 4.4173 19 1 2.1421 2.4877 3.7971 20 1 0.3662 4.0532 4.3225 21 1 0.8686 2.2339 5.8451 22 6 2.0323 -0.7104 -1.2305 23 6 2.8271 -0.0378 -2.1401 24 6 3.2886 -0.6870 -3.2696 25 6 2.9547 -2.0119 -3.4913 26 9 3.4058 -2.6473 -4.5949 27 6 2.1568 -2.6861 -2.5797 28 9 1.8292 -3.9791 -2.7942 29 6 1.6979 -2.0336 -1.4485 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.1494 0.5389 2.5435 34 1 1.8594 -1.9778 3.6335 35 1 3.2842 -0.9115 3.6682 36 1 2.3951 -2.0163 5.9345 37 1 2.9798 -0.4615 6.6126 38 1 0.9004 -1.7570 7.8047 39 1 0.8472 0.0287 7.6239 40 1 -0.4247 -2.1107 5.8299 41 1 -1.1790 -0.6302 6.4938 42 1 -0.9242 2.9221 2.1750 43 1 3.0910 0.9948 -1.9658 44 1 3.9090 -0.1604 -3.9796 45 1 1.0766 -2.5579 -0.7374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267280740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:50 Heat of formation + Delta-G solvation = -82.383753 kcal Electronic energy + Delta-G solvation = -30284.970039 eV Core-core repulsion = 25938.826221 eV Total energy + Delta-G solvation = -4346.143818 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.37859 -48.45337 -39.97646 -38.65251 -37.72543 -33.97243 -33.64786 -32.82153 -30.76046 -30.19030 -29.65576 -28.56434 -25.32565 -24.46020 -23.65734 -23.01925 -21.67491 -20.78220 -20.09539 -19.27704 -17.88247 -17.31699 -17.12266 -16.82699 -16.30604 -16.17569 -15.80990 -15.30503 -14.94965 -14.87273 -14.62944 -14.43171 -14.05211 -13.90249 -13.60347 -13.40823 -13.27342 -13.14572 -12.71889 -12.39399 -12.26211 -12.13324 -12.06495 -11.69964 -11.47277 -11.36023 -11.32825 -10.98789 -10.93860 -10.84922 -10.73870 -10.52770 -10.44460 -10.10961 -9.68074 -9.20192 -8.95545 -8.84993 -8.53544 -8.23973 -6.88599 -6.30749 -3.84430 0.96239 1.09281 3.05785 3.22238 3.24439 3.28857 3.37134 3.84016 3.97400 4.18659 4.38293 4.56216 4.66990 4.78740 4.91753 5.02500 5.20044 5.20971 5.28620 5.39819 5.45116 5.53558 5.59562 5.76303 5.79259 5.84509 5.93097 5.94846 6.03010 6.06499 6.09606 6.20684 6.21053 6.28804 6.35106 6.37781 6.53557 6.58621 6.73203 6.76613 6.80189 7.07896 7.21445 7.76585 8.10208 8.33815 8.58595 8.91891 9.29773 10.01481 10.80838 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.003375 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.952185 B = 8294.629795 C = 8957.108128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.072 4.072 3 H 0.103 0.897 4 C 0.512 3.488 5 O -0.562 6.562 6 N -0.701 5.701 7 C 0.118 3.882 8 C 0.129 3.871 9 H 0.038 0.962 10 C -0.123 4.123 11 C -0.136 4.136 12 C 0.128 3.872 13 N -0.606 5.606 14 C -0.233 4.233 15 H 0.084 0.916 16 C 0.025 3.975 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.281 1.281 20 H -0.295 1.295 21 H -0.263 1.263 22 C -0.033 4.033 23 C -0.097 4.097 24 C -0.129 4.129 25 C 0.057 3.943 26 F -0.135 7.135 27 C 0.065 3.935 28 F -0.132 7.132 29 C -0.088 4.088 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.059 0.941 33 H 0.420 0.580 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.051 0.949 42 H 0.269 0.731 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.167 -1.964 -3.887 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.093 4.093 3 H 0.121 0.879 4 C 0.297 3.703 5 O -0.442 6.442 6 N -0.357 5.357 7 C -0.008 4.008 8 C 0.023 3.977 9 H 0.056 0.944 10 C -0.162 4.162 11 C -0.174 4.174 12 C 0.004 3.996 13 N -0.333 5.333 14 C -0.362 4.362 15 H 0.102 0.898 16 C -0.175 4.175 17 N -0.537 5.537 18 Si 0.700 3.300 19 H -0.208 1.208 20 H -0.222 1.222 21 H -0.188 1.188 22 C -0.034 4.034 23 C -0.115 4.115 24 C -0.147 4.147 25 C 0.036 3.964 26 F -0.113 7.113 27 C 0.045 3.955 28 F -0.111 7.111 29 C -0.107 4.107 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.078 0.922 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.525 -2.515 -4.158 8.136 hybrid contribution 0.518 0.729 0.198 0.916 sum 7.044 -1.786 -3.959 8.275 Atomic orbital electron populations 1.22107 0.90045 1.03145 1.06245 1.20324 0.99450 0.99680 0.89881 0.87942 1.20328 0.80272 0.84681 0.85015 1.90640 1.39418 1.26980 1.87205 1.46497 1.52089 1.32746 1.04366 1.21845 0.96813 0.97127 0.85013 1.21563 0.86990 0.96713 0.92450 0.94432 1.22501 0.97734 1.00522 0.95432 1.22767 0.96092 1.01167 0.97377 1.21777 0.95598 0.95337 0.86927 1.44703 0.99289 1.64519 1.24765 1.18619 1.10100 0.94128 1.13363 0.89841 1.25713 0.98133 0.96228 0.97437 1.69657 1.42588 1.17360 1.24072 0.87002 0.80652 0.79978 0.82319 1.20756 1.22206 1.18809 1.19423 0.95726 0.93029 0.95226 1.20977 0.96796 1.00607 0.93120 1.20942 1.02134 0.92102 0.99561 1.17644 1.00843 0.92228 0.85640 1.91495 1.87510 1.81986 1.50358 1.17622 1.01320 0.79839 0.96679 1.91509 1.91075 1.33707 1.94767 1.20899 1.00081 0.94784 0.94927 0.92804 0.86119 0.92168 0.73563 0.91780 0.93116 0.91000 0.91591 0.91607 0.91680 0.95415 0.93110 0.92028 0.84304 0.83893 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.90 37.16 0.33 -2.39 16 2 C -0.07 -1.19 2.90 -92.93 -0.27 -1.46 16 3 H 0.10 1.53 7.87 -51.93 -0.41 1.12 16 4 C 0.51 10.11 7.02 -10.99 -0.08 10.03 16 5 O -0.56 -12.15 15.11 5.55 0.08 -12.06 16 6 N -0.70 -14.48 4.81 -60.29 -0.29 -14.77 16 7 C 0.12 2.30 5.18 -4.04 -0.02 2.28 16 8 C 0.13 2.50 2.48 -66.95 -0.17 2.33 16 9 H 0.04 0.79 3.83 -51.93 -0.20 0.60 16 10 C -0.12 -1.90 6.48 -24.90 -0.16 -2.06 16 11 C -0.14 -2.05 7.09 -24.58 -0.17 -2.22 16 12 C 0.13 2.33 7.23 -2.53 -0.02 2.31 16 13 N -0.61 -12.93 2.52 -162.57 -0.41 -13.34 16 14 C -0.23 -5.62 8.98 -15.06 -0.14 -5.75 16 15 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.03 0.61 3.56 -17.43 -0.06 0.55 16 17 N -0.90 -22.08 12.12 55.49 0.67 -21.41 16 18 Si 0.87 19.56 23.89 -169.99 -4.06 15.50 16 19 H -0.28 -6.14 7.03 56.52 0.40 -5.74 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.26 -5.95 7.01 56.52 0.40 -5.56 16 22 C -0.03 -0.51 4.40 -104.62 -0.46 -0.97 16 23 C -0.10 -1.21 9.67 -39.58 -0.38 -1.60 16 24 C -0.13 -1.54 10.02 -39.53 -0.40 -1.93 16 25 C 0.06 0.80 7.31 -39.37 -0.29 0.51 16 26 F -0.13 -1.93 17.18 2.25 0.04 -1.89 16 27 C 0.07 1.02 7.31 -39.37 -0.29 0.73 16 28 F -0.13 -2.13 17.18 2.25 0.04 -2.09 16 29 C -0.09 -1.41 7.90 -39.53 -0.31 -1.72 16 30 H 0.05 0.92 7.39 -51.93 -0.38 0.53 16 31 H 0.12 2.46 5.57 -51.93 -0.29 2.17 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.42 9.08 3.18 -40.82 -0.13 8.95 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.01 7.85 -51.92 -0.41 0.60 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 43 H 0.14 1.37 7.94 -52.49 -0.42 0.95 16 44 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.14 2.38 7.51 -52.49 -0.39 1.99 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -26.76 361.10 -7.37 -34.12 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -6.00 Total: 11.85 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.88 Total: -1.35 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.03 Total: -49.51 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.08 Total: -3.98 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.06 Total: 15.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.76 -7.37 -34.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267280740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.260 kcal (2) G-P(sol) polarization free energy of solvation -26.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds