Wall clock time and date at job start Tue Mar 31 2020 21:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47159 * 2 1 4 4 C 1.50695 * 109.47416 * 120.00030 * 2 1 3 5 5 O 1.21285 * 120.00288 * 119.99410 * 4 2 1 6 6 N 1.34777 * 119.99940 * 300.00165 * 4 2 1 7 7 C 1.46503 * 120.00165 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47237 * 181.91360 * 7 6 4 9 9 H 1.08998 * 109.87363 * 300.02520 * 8 7 6 10 10 C 1.54322 * 109.88188 * 179.00442 * 8 7 6 11 11 C 1.55156 * 102.94208 * 218.39102 * 10 8 7 12 12 C 1.54915 * 101.58049 * 35.50496 * 11 10 8 13 13 N 1.47024 * 109.87902 * 61.19737 * 8 7 6 14 14 C 1.36938 * 125.65160 * 298.33689 * 13 8 7 15 15 H 1.07994 * 120.00095 * 133.89052 * 14 13 8 16 16 C 1.38810 * 119.99626 * 313.89031 * 14 13 8 17 17 N 1.31617 * 119.99903 * 169.80632 * 16 14 13 18 18 Si 1.86803 * 120.00246 * 349.80910 * 16 14 13 19 19 H 1.48501 * 109.47086 * 90.93943 * 18 16 14 20 20 H 1.48500 * 109.47055 * 210.93990 * 18 16 14 21 21 H 1.48499 * 109.46926 * 330.93838 * 18 16 14 22 22 C 1.50702 * 109.47057 * 239.99873 * 2 1 3 23 23 C 1.38259 * 119.96334 * 119.99817 * 22 2 1 24 24 C 1.38210 * 120.07188 * 180.02562 * 23 22 2 25 25 C 1.38413 * 119.99740 * 0.02562 * 24 23 22 26 26 F 1.35102 * 120.03235 * 180.02562 * 25 24 23 27 27 C 1.38641 * 119.93131 * 0.02562 * 25 24 23 28 28 F 1.35105 * 120.03690 * 179.97438 * 27 25 24 29 29 C 1.38209 * 119.96675 * 300.00249 * 22 2 1 30 30 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46873 * 300.00028 * 1 2 3 32 32 H 1.08995 * 109.47415 * 59.99791 * 1 2 3 33 33 H 0.97003 * 120.00028 * 359.97438 * 6 4 2 34 34 H 1.08998 * 109.47167 * 301.91899 * 7 6 4 35 35 H 1.09007 * 109.46968 * 61.91675 * 7 6 4 36 36 H 1.09008 * 110.71927 * 336.75434 * 10 8 7 37 37 H 1.08996 * 110.72095 * 100.02688 * 10 8 7 38 38 H 1.09004 * 111.00265 * 153.57714 * 11 10 8 39 39 H 1.08994 * 111.00652 * 277.42535 * 11 10 8 40 40 H 1.08998 * 110.36476 * 81.82706 * 12 11 10 41 41 H 1.08998 * 110.36387 * 204.03815 * 12 11 10 42 42 H 0.96998 * 120.00273 * 179.97438 * 17 16 14 43 43 H 1.07996 * 119.96537 * 0.27939 * 23 22 2 44 44 H 1.07997 * 120.00314 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00158 * 0.02562 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 2.1947 -0.9408 3.6507 8 6 1.6458 -0.2479 4.8995 9 1 1.9771 0.7903 4.9230 10 6 2.1340 -0.9834 6.1653 11 6 0.8967 -0.9256 7.0997 12 6 -0.2659 -1.0630 6.0852 13 7 0.1768 -0.3073 4.8993 14 6 -0.6444 0.2477 3.9544 15 1 -1.4634 -0.3260 3.5466 16 6 -0.4239 1.5478 3.5208 17 7 -1.0780 2.0135 2.4778 18 14 0.8010 2.6365 4.4173 19 1 2.1421 2.4877 3.7971 20 1 0.3662 4.0532 4.3225 21 1 0.8686 2.2339 5.8451 22 6 2.0323 -0.7104 -1.2305 23 6 2.8271 -0.0378 -2.1401 24 6 3.2886 -0.6870 -3.2696 25 6 2.9547 -2.0119 -3.4913 26 9 3.4058 -2.6473 -4.5949 27 6 2.1568 -2.6861 -2.5797 28 9 1.8292 -3.9791 -2.7942 29 6 1.6979 -2.0336 -1.4485 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.1494 0.5389 2.5435 34 1 1.8594 -1.9778 3.6335 35 1 3.2842 -0.9115 3.6682 36 1 2.3951 -2.0163 5.9345 37 1 2.9798 -0.4615 6.6126 38 1 0.9004 -1.7570 7.8047 39 1 0.8472 0.0287 7.6239 40 1 -0.4247 -2.1107 5.8299 41 1 -1.1790 -0.6302 6.4938 42 1 -0.9242 2.9221 2.1750 43 1 3.0910 0.9948 -1.9658 44 1 3.9090 -0.1604 -3.9796 45 1 1.0766 -2.5579 -0.7374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267280740.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:49 Heat of formation + Delta-G solvation = -96.425443 kcal Electronic energy + Delta-G solvation = -30285.578932 eV Core-core repulsion = 25938.826221 eV Total energy + Delta-G solvation = -4346.752711 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -50.54043 -49.62293 -41.36916 -40.00113 -39.14564 -35.54192 -34.96621 -34.58430 -31.86085 -31.79392 -31.02823 -29.85578 -26.85958 -25.94166 -25.07505 -24.16767 -22.97109 -22.20196 -21.61328 -20.73256 -19.08392 -18.79026 -18.46055 -18.14539 -17.67750 -17.45584 -17.30997 -16.84991 -16.43127 -16.06798 -16.05382 -15.58919 -15.30784 -15.26035 -15.08904 -14.93919 -14.77675 -14.48082 -14.14607 -13.79893 -13.65218 -13.53501 -13.35827 -13.06085 -12.90097 -12.89709 -12.64595 -12.63124 -12.25978 -12.21307 -12.12296 -11.94107 -11.85379 -11.79879 -11.22799 -10.74874 -10.64856 -10.06004 -9.86663 -9.68383 -8.60103 -8.17055 -5.69895 -0.16472 0.01007 1.27265 1.41379 1.49078 1.67459 2.19394 2.33901 2.58987 2.73610 3.01439 3.24436 3.34019 3.41003 3.57474 3.84779 3.90574 3.97775 4.03038 4.07639 4.12483 4.23185 4.30811 4.36032 4.40563 4.61626 4.71045 4.77656 4.78858 4.83323 4.85223 4.92054 4.96624 4.99769 5.02722 5.13493 5.16591 5.26882 5.36755 5.47204 5.58242 5.64586 5.71882 5.97819 6.21799 6.73804 6.83969 7.32996 7.46955 8.23944 8.96836 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017453 B = 0.003375 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.952185 B = 8294.629795 C = 8957.108128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.065 4.065 3 H 0.125 0.875 4 C 0.506 3.494 5 O -0.584 6.584 6 N -0.712 5.712 7 C 0.117 3.883 8 C 0.123 3.877 9 H 0.026 0.974 10 C -0.118 4.118 11 C -0.123 4.123 12 C 0.119 3.881 13 N -0.621 5.621 14 C -0.233 4.233 15 H 0.043 0.957 16 C 0.003 3.997 17 N -0.916 5.916 18 Si 0.913 3.087 19 H -0.271 1.271 20 H -0.302 1.302 21 H -0.263 1.263 22 C -0.047 4.047 23 C -0.084 4.084 24 C -0.111 4.111 25 C 0.053 3.947 26 F -0.136 7.136 27 C 0.045 3.955 28 F -0.143 7.143 29 C -0.103 4.103 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.416 0.584 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.270 0.730 43 H 0.175 0.825 44 H 0.184 0.816 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 -0.824 -3.770 9.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 H 0.143 0.857 4 C 0.293 3.707 5 O -0.466 6.466 6 N -0.367 5.367 7 C -0.009 4.009 8 C 0.017 3.983 9 H 0.044 0.956 10 C -0.156 4.156 11 C -0.161 4.161 12 C -0.005 4.005 13 N -0.348 5.348 14 C -0.363 4.363 15 H 0.060 0.940 16 C -0.196 4.196 17 N -0.558 5.558 18 Si 0.742 3.258 19 H -0.197 1.197 20 H -0.230 1.230 21 H -0.188 1.188 22 C -0.048 4.048 23 C -0.102 4.102 24 C -0.129 4.129 25 C 0.033 3.967 26 F -0.115 7.115 27 C 0.025 3.975 28 F -0.122 7.122 29 C -0.122 4.122 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.259 0.741 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.193 0.807 44 H 0.201 0.799 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.819 -1.395 -4.023 9.793 hybrid contribution -0.246 0.309 0.121 0.413 sum 8.573 -1.086 -3.902 9.482 Atomic orbital electron populations 1.21973 0.90911 1.02240 1.05741 1.20287 0.98609 1.00594 0.89066 0.85732 1.20893 0.79721 0.84461 0.85665 1.90618 1.40511 1.27928 1.87572 1.46650 1.52111 1.32725 1.05183 1.21893 0.97561 0.96378 0.85085 1.21707 0.85677 0.96593 0.94300 0.95627 1.22562 0.98512 1.01193 0.93331 1.22720 0.93938 1.02563 0.96880 1.21923 0.96879 0.94803 0.86901 1.44828 1.00215 1.64558 1.25174 1.18280 1.09805 0.94066 1.14189 0.93959 1.25943 0.99285 0.96701 0.97656 1.69751 1.43746 1.17546 1.24788 0.86339 0.79789 0.78166 0.81519 1.19718 1.23011 1.18816 1.19411 0.97118 0.92761 0.95469 1.21358 0.94830 1.01967 0.92027 1.21355 1.01061 0.90858 0.99621 1.17861 1.00558 0.93085 0.85240 1.91493 1.87442 1.82237 1.50313 1.17795 1.02584 0.79701 0.97415 1.91471 1.91356 1.34476 1.94868 1.20795 1.00778 0.95522 0.95084 0.93966 0.89006 0.90073 0.74089 0.93042 0.91723 0.89516 0.89076 0.88122 0.91814 0.95230 0.93935 0.91957 0.80746 0.79921 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 8.90 71.98 0.64 -4.65 16 2 C -0.06 -2.10 2.90 -12.29 -0.04 -2.13 16 3 H 0.12 3.46 7.87 -2.39 -0.02 3.44 16 4 C 0.51 20.06 7.02 87.66 0.62 20.68 16 5 O -0.58 -25.49 15.11 -3.04 -0.05 -25.54 16 6 N -0.71 -29.53 4.81 -463.05 -2.23 -31.76 16 7 C 0.12 4.50 5.18 86.38 0.45 4.95 16 8 C 0.12 4.62 2.48 45.34 0.11 4.73 16 9 H 0.03 1.05 3.83 -2.39 -0.01 1.04 16 10 C -0.12 -3.28 6.48 31.78 0.21 -3.07 16 11 C -0.12 -3.36 7.09 31.99 0.23 -3.13 16 12 C 0.12 4.25 7.23 86.86 0.63 4.88 16 13 N -0.62 -26.57 2.52 -668.26 -1.68 -28.25 16 14 C -0.23 -11.61 8.98 84.03 0.75 -10.85 16 15 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 16 C 0.00 0.15 3.56 84.86 0.30 0.45 16 17 N -0.92 -46.07 12.12 21.65 0.26 -45.81 16 18 Si 0.91 39.89 23.89 68.60 1.64 41.53 16 19 H -0.27 -11.29 7.03 99.48 0.70 -10.59 16 20 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.26 -11.42 7.01 99.48 0.70 -10.72 16 22 C -0.05 -1.37 4.40 -19.87 -0.09 -1.45 16 23 C -0.08 -1.81 9.67 22.27 0.22 -1.60 16 24 C -0.11 -2.23 10.02 22.30 0.22 -2.01 16 25 C 0.05 1.40 7.31 22.41 0.16 1.56 16 26 F -0.14 -3.67 17.18 44.97 0.77 -2.90 16 27 C 0.05 1.40 7.31 22.41 0.16 1.57 16 28 F -0.14 -4.76 17.18 44.97 0.77 -3.99 16 29 C -0.10 -3.34 7.90 22.30 0.18 -3.16 16 30 H 0.04 1.52 7.39 -2.39 -0.02 1.50 16 31 H 0.09 3.84 5.57 -2.38 -0.01 3.83 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.42 18.11 3.18 -92.71 -0.29 17.81 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.09 2.17 7.85 -2.38 -0.02 2.15 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 43 H 0.18 2.53 7.94 -2.91 -0.02 2.51 16 44 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 45 H 0.12 4.40 7.51 -2.91 -0.02 4.38 16 Total: -1.00 -60.24 361.10 4.96 -55.28 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: 0.71 Total: 34.67 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 4.75 Total: 6.75 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.65 Total: -105.81 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.05 Total: -25.54 kcal Atomic # 9 Polarization: -8.43 SS G_CDS: 1.55 Total: -6.88 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.64 Total: 41.53 kcal Total: -60.24 4.96 -55.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267280740.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.141 kcal (2) G-P(sol) polarization free energy of solvation -60.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds