Wall clock time and date at job start Tue Mar 31 2020 21:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46967 * 2 1 4 4 C 1.50703 * 109.46856 * 239.99830 * 2 1 3 5 5 O 1.21281 * 120.00039 * 239.99495 * 4 2 1 6 6 N 1.34781 * 119.99884 * 60.00622 * 4 2 1 7 7 C 1.47425 * 125.64922 * 5.05110 * 6 4 2 8 8 C 1.54907 * 104.83224 * 155.91957 * 7 6 4 9 9 C 1.55160 * 101.57840 * 37.01382 * 8 7 6 10 10 C 1.47021 * 125.64714 * 185.10784 * 6 4 2 11 11 H 1.08996 * 109.88595 * 300.43185 * 10 6 4 12 12 C 1.53007 * 110.00822 * 61.52468 * 10 6 4 13 13 N 1.46505 * 109.46989 * 182.00312 * 12 10 6 14 14 C 1.36938 * 119.99772 * 185.28285 * 13 12 10 15 15 H 1.07991 * 120.00218 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99596 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00421 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99851 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46984 * 59.99976 * 18 16 14 20 20 H 1.48509 * 109.47187 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47290 * 299.99862 * 18 16 14 22 22 C 1.50698 * 109.47231 * 120.00065 * 2 1 3 23 23 C 1.38258 * 119.96448 * 240.00162 * 22 2 1 24 24 C 1.38212 * 120.06973 * 180.02562 * 23 22 2 25 25 C 1.38414 * 120.00048 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.03394 * 180.02562 * 25 24 23 27 27 C 1.38646 * 119.92730 * 0.02562 * 25 24 23 28 28 F 1.35104 * 120.03448 * 179.97438 * 27 25 24 29 29 C 1.38214 * 119.96549 * 59.72556 * 22 2 1 30 30 H 1.09004 * 109.47215 * 300.00356 * 1 2 3 31 31 H 1.09004 * 109.47376 * 59.99876 * 1 2 3 32 32 H 1.09002 * 109.47443 * 179.97438 * 1 2 3 33 33 H 1.09003 * 110.36463 * 37.08678 * 7 6 4 34 34 H 1.08998 * 110.36508 * 274.76111 * 7 6 4 35 35 H 1.08991 * 111.00756 * 278.93897 * 8 7 6 36 36 H 1.08997 * 111.00384 * 155.08409 * 8 7 6 37 37 H 1.08997 * 110.72427 * 82.86157 * 9 8 7 38 38 H 1.09005 * 110.71736 * 206.13782 * 9 8 7 39 39 H 1.09004 * 109.46582 * 301.99967 * 12 10 6 40 40 H 1.08990 * 109.47564 * 62.00213 * 12 10 6 41 41 H 0.96997 * 119.99731 * 5.28596 * 13 12 10 42 42 H 0.96997 * 119.99940 * 180.02562 * 17 16 14 43 43 H 1.08001 * 119.96190 * 359.97137 * 23 22 2 44 44 H 1.07999 * 119.99986 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.99816 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.9596 0.9896 -2.7357 8 6 1.3744 1.3849 -4.1749 9 6 1.4867 -0.0032 -4.8590 10 6 2.0368 -0.9011 -3.7308 11 1 3.1180 -0.9987 -3.8284 12 6 1.3816 -2.2821 -3.7987 13 7 1.7568 -2.9394 -5.0531 14 6 1.2017 -4.1460 -5.3865 15 1 0.4877 -4.6133 -4.7246 16 6 1.5576 -4.7690 -6.5747 17 7 2.4283 -4.1999 -7.3812 18 14 0.7999 -6.4147 -7.0299 19 1 -0.6749 -6.2703 -7.1282 20 1 1.3410 -6.8640 -8.3378 21 1 1.1305 -7.4176 -5.9860 22 6 2.0323 -0.7104 1.2304 23 6 2.8271 -0.0378 2.1400 24 6 3.2895 -0.6874 3.2690 25 6 2.9565 -2.0125 3.4902 26 9 3.4076 -2.6480 4.5937 27 6 2.1595 -2.6870 2.5780 28 9 1.8335 -3.9806 2.7915 29 6 1.6933 -2.0320 1.4513 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2431 1.7714 -2.0310 34 1 -0.1135 0.8049 -2.6873 35 1 2.3347 1.9003 -4.1771 36 1 0.6049 1.9934 -4.6499 37 1 0.5074 -0.3521 -5.1867 38 1 2.1838 0.0347 -5.6961 39 1 1.7194 -2.8863 -2.9567 40 1 0.2980 -2.1727 -3.7558 41 1 2.3985 -2.5199 -5.6474 42 1 2.6766 -4.6351 -8.2117 43 1 3.0877 0.9961 1.9677 44 1 3.9106 -0.1610 3.9786 45 1 1.0684 -2.5549 0.7425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267969962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:45 Heat of formation + Delta-G solvation = -85.112927 kcal Electronic energy + Delta-G solvation = -29474.879189 eV Core-core repulsion = 25128.617025 eV Total energy + Delta-G solvation = -4346.262164 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.57987 -48.65102 -40.65595 -39.15877 -37.32913 -34.73705 -34.10186 -31.62136 -31.33674 -30.99538 -29.42885 -28.56061 -25.56611 -24.80346 -23.65724 -23.15180 -22.19153 -21.80438 -20.54577 -18.93896 -18.07389 -17.73784 -17.11602 -17.05170 -16.58122 -16.41401 -16.16758 -15.45054 -15.06402 -14.84123 -14.57523 -14.48711 -14.28751 -14.11310 -13.87370 -13.64013 -13.37475 -13.31582 -12.92587 -12.74954 -12.68896 -12.58792 -12.46501 -11.96602 -11.89196 -11.59276 -11.47272 -11.30844 -11.16182 -10.91014 -10.82056 -10.55320 -10.44808 -10.07311 -9.77483 -9.59983 -9.23578 -8.84604 -8.82139 -8.48982 -6.89066 -5.73750 -3.02115 0.66567 0.81467 2.66691 2.88436 3.23938 3.46862 3.51071 3.52589 3.59746 4.09464 4.19548 4.25220 4.42320 4.55753 4.64462 4.68281 4.79237 4.84611 4.90239 4.95687 5.00606 5.27374 5.33770 5.41001 5.43958 5.53193 5.54902 5.60150 5.63945 5.66138 5.75447 5.78156 5.82486 5.89747 6.02341 6.05807 6.11907 6.17993 6.40180 6.52182 6.54533 6.79769 6.96112 7.61814 7.72967 8.24537 8.45218 9.56177 10.12439 10.47958 11.49196 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003104 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.416656 B = 9018.256040 C =10927.022471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.066 4.066 3 H 0.108 0.892 4 C 0.528 3.472 5 O -0.520 6.520 6 N -0.609 5.609 7 C 0.098 3.902 8 C -0.136 4.136 9 C -0.120 4.120 10 C 0.130 3.870 11 H 0.075 0.925 12 C 0.148 3.852 13 N -0.728 5.728 14 C -0.236 4.236 15 H 0.068 0.932 16 C -0.013 4.013 17 N -0.935 5.935 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.046 4.046 23 C -0.093 4.093 24 C -0.128 4.128 25 C 0.064 3.936 26 F -0.131 7.131 27 C 0.070 3.930 28 F -0.128 7.128 29 C -0.089 4.089 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.029 0.971 40 H 0.020 0.980 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 18.097 18.855 26.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 H 0.126 0.874 4 C 0.315 3.685 5 O -0.395 6.395 6 N -0.344 5.344 7 C -0.025 4.025 8 C -0.174 4.174 9 C -0.158 4.158 10 C 0.027 3.973 11 H 0.093 0.907 12 C 0.020 3.980 13 N -0.372 5.372 14 C -0.367 4.367 15 H 0.086 0.914 16 C -0.209 4.209 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.047 4.047 23 C -0.112 4.112 24 C -0.147 4.147 25 C 0.044 3.956 26 F -0.110 7.110 27 C 0.049 3.951 28 F -0.106 7.106 29 C -0.108 4.108 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.046 0.954 40 H 0.038 0.962 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.769 17.288 19.048 25.872 hybrid contribution -0.088 -1.216 -0.307 1.257 sum -2.857 16.073 18.741 24.854 Atomic orbital electron populations 1.21943 0.91563 1.03719 1.03430 1.20264 0.98146 1.00133 0.90230 0.87415 1.19982 0.80605 0.84836 0.83080 1.90796 1.36815 1.26143 1.85709 1.48485 1.56067 1.24394 1.05464 1.22427 0.96423 0.86247 0.97391 1.22818 1.02123 0.97972 0.94446 1.22654 1.03193 0.92844 0.97072 1.21820 1.00138 0.93889 0.81412 0.90657 1.20917 0.96037 0.90188 0.90902 1.42184 1.52572 1.22612 1.19871 1.19154 1.19126 0.96053 1.02389 0.91355 1.24712 0.99807 0.99003 0.97393 1.69645 1.36342 1.39569 1.12787 0.86262 0.78536 0.83964 0.77408 1.21302 1.21670 1.21249 1.19219 0.97183 0.93233 0.95087 1.20916 0.96674 1.00511 0.93052 1.20976 1.01975 0.92133 0.99620 1.17705 1.00219 0.92152 0.85545 1.91519 1.87375 1.81942 1.50155 1.17637 1.00912 0.79936 0.96567 1.91543 1.90970 1.33425 1.94700 1.20917 1.00170 0.94635 0.95075 0.91070 0.90713 0.91555 0.90854 0.91026 0.90816 0.89950 0.89815 0.89784 0.95359 0.96180 0.78308 0.93496 0.84272 0.83681 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.84 37.16 0.33 -0.79 16 2 C -0.07 -0.61 2.28 -92.92 -0.21 -0.82 16 3 H 0.11 0.68 7.50 -51.93 -0.39 0.30 16 4 C 0.53 7.38 6.81 -10.98 -0.07 7.31 16 5 O -0.52 -9.76 14.33 5.56 0.08 -9.68 16 6 N -0.61 -8.06 3.05 -163.01 -0.50 -8.56 16 7 C 0.10 0.87 5.30 -2.53 -0.01 0.86 16 8 C -0.14 -1.27 7.09 -24.58 -0.17 -1.44 16 9 C -0.12 -1.66 6.08 -24.90 -0.15 -1.81 16 10 C 0.13 2.17 2.92 -66.95 -0.20 1.97 16 11 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 12 C 0.15 3.15 5.63 -4.04 -0.02 3.13 16 13 N -0.73 -18.84 5.37 -59.91 -0.32 -19.16 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 18 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 22 C -0.05 -0.48 4.39 -104.62 -0.46 -0.94 16 23 C -0.09 -0.77 9.67 -39.58 -0.38 -1.16 16 24 C -0.13 -1.14 10.02 -39.53 -0.40 -1.54 16 25 C 0.06 0.75 7.31 -39.37 -0.29 0.46 16 26 F -0.13 -1.64 17.18 2.25 0.04 -1.60 16 27 C 0.07 0.91 7.31 -39.37 -0.29 0.63 16 28 F -0.13 -1.87 17.18 2.25 0.04 -1.83 16 29 C -0.09 -1.11 7.91 -39.53 -0.31 -1.42 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 5.21 -51.93 -0.27 0.22 16 32 H 0.07 0.59 7.37 -51.93 -0.38 0.21 16 33 H 0.07 0.45 7.51 -51.93 -0.39 0.06 16 34 H 0.07 0.58 6.90 -51.93 -0.36 0.22 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.27 7.82 -51.93 -0.41 0.86 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.68 6.97 -51.93 -0.36 0.32 16 40 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 41 H 0.38 10.25 7.52 -40.82 -0.31 9.94 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.14 0.72 7.94 -52.49 -0.42 0.30 16 44 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 45 H 0.15 1.90 7.51 -52.49 -0.39 1.50 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -34.77 373.34 -8.40 -43.17 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.18 Total: 4.93 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -2.89 Total: -2.98 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.09 Total: -55.49 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.08 Total: -3.44 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.77 -8.40 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267969962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.939 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds