Wall clock time and date at job start Tue Mar 31 2020 21:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46967 * 2 1 4 4 C 1.50703 * 109.46856 * 239.99830 * 2 1 3 5 5 O 1.21281 * 120.00039 * 239.99495 * 4 2 1 6 6 N 1.34781 * 119.99884 * 60.00622 * 4 2 1 7 7 C 1.47425 * 125.64922 * 5.05110 * 6 4 2 8 8 C 1.54907 * 104.83224 * 155.91957 * 7 6 4 9 9 C 1.55160 * 101.57840 * 37.01382 * 8 7 6 10 10 C 1.47021 * 125.64714 * 185.10784 * 6 4 2 11 11 H 1.08996 * 109.88595 * 300.43185 * 10 6 4 12 12 C 1.53007 * 110.00822 * 61.52468 * 10 6 4 13 13 N 1.46505 * 109.46989 * 182.00312 * 12 10 6 14 14 C 1.36938 * 119.99772 * 185.28285 * 13 12 10 15 15 H 1.07991 * 120.00218 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99596 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00421 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99851 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46984 * 59.99976 * 18 16 14 20 20 H 1.48509 * 109.47187 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47290 * 299.99862 * 18 16 14 22 22 C 1.50698 * 109.47231 * 120.00065 * 2 1 3 23 23 C 1.38258 * 119.96448 * 240.00162 * 22 2 1 24 24 C 1.38212 * 120.06973 * 180.02562 * 23 22 2 25 25 C 1.38414 * 120.00048 * 359.97438 * 24 23 22 26 26 F 1.35098 * 120.03394 * 180.02562 * 25 24 23 27 27 C 1.38646 * 119.92730 * 0.02562 * 25 24 23 28 28 F 1.35104 * 120.03448 * 179.97438 * 27 25 24 29 29 C 1.38214 * 119.96549 * 59.72556 * 22 2 1 30 30 H 1.09004 * 109.47215 * 300.00356 * 1 2 3 31 31 H 1.09004 * 109.47376 * 59.99876 * 1 2 3 32 32 H 1.09002 * 109.47443 * 179.97438 * 1 2 3 33 33 H 1.09003 * 110.36463 * 37.08678 * 7 6 4 34 34 H 1.08998 * 110.36508 * 274.76111 * 7 6 4 35 35 H 1.08991 * 111.00756 * 278.93897 * 8 7 6 36 36 H 1.08997 * 111.00384 * 155.08409 * 8 7 6 37 37 H 1.08997 * 110.72427 * 82.86157 * 9 8 7 38 38 H 1.09005 * 110.71736 * 206.13782 * 9 8 7 39 39 H 1.09004 * 109.46582 * 301.99967 * 12 10 6 40 40 H 1.08990 * 109.47564 * 62.00213 * 12 10 6 41 41 H 0.96997 * 119.99731 * 5.28596 * 13 12 10 42 42 H 0.96997 * 119.99940 * 180.02562 * 17 16 14 43 43 H 1.08001 * 119.96190 * 359.97137 * 23 22 2 44 44 H 1.07999 * 119.99986 * 179.97438 * 24 23 22 45 45 H 1.07999 * 119.99816 * 359.97438 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 0.9596 0.9896 -2.7357 8 6 1.3744 1.3849 -4.1749 9 6 1.4867 -0.0032 -4.8590 10 6 2.0368 -0.9011 -3.7308 11 1 3.1180 -0.9987 -3.8284 12 6 1.3816 -2.2821 -3.7987 13 7 1.7568 -2.9394 -5.0531 14 6 1.2017 -4.1460 -5.3865 15 1 0.4877 -4.6133 -4.7246 16 6 1.5576 -4.7690 -6.5747 17 7 2.4283 -4.1999 -7.3812 18 14 0.7999 -6.4147 -7.0299 19 1 -0.6749 -6.2703 -7.1282 20 1 1.3410 -6.8640 -8.3378 21 1 1.1305 -7.4176 -5.9860 22 6 2.0323 -0.7104 1.2304 23 6 2.8271 -0.0378 2.1400 24 6 3.2895 -0.6874 3.2690 25 6 2.9565 -2.0125 3.4902 26 9 3.4076 -2.6480 4.5937 27 6 2.1595 -2.6870 2.5780 28 9 1.8335 -3.9806 2.7915 29 6 1.6933 -2.0320 1.4513 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.2431 1.7714 -2.0310 34 1 -0.1135 0.8049 -2.6873 35 1 2.3347 1.9003 -4.1771 36 1 0.6049 1.9934 -4.6499 37 1 0.5074 -0.3521 -5.1867 38 1 2.1838 0.0347 -5.6961 39 1 1.7194 -2.8863 -2.9567 40 1 0.2980 -2.1727 -3.7558 41 1 2.3985 -2.5199 -5.6474 42 1 2.6766 -4.6351 -8.2117 43 1 3.0877 0.9961 1.9677 44 1 3.9106 -0.1610 3.9786 45 1 1.0684 -2.5549 0.7425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267969962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:44 Heat of formation + Delta-G solvation = -107.340910 kcal Electronic energy + Delta-G solvation = -29475.843067 eV Core-core repulsion = 25128.617025 eV Total energy + Delta-G solvation = -4347.226041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.55597 -49.64330 -41.65407 -40.07226 -38.47156 -36.47568 -35.16270 -33.40892 -32.47311 -31.81980 -30.53717 -29.78841 -26.81883 -26.07011 -24.81845 -24.19255 -23.68272 -22.65290 -21.65772 -20.17851 -19.15177 -18.94371 -18.55101 -18.00570 -17.68620 -17.41135 -17.25489 -16.57708 -16.37450 -16.07815 -15.72019 -15.56823 -15.44853 -15.09695 -15.05417 -15.02061 -14.92436 -14.46792 -14.10483 -13.79326 -13.71575 -13.51560 -13.30700 -13.05672 -13.01146 -12.82916 -12.75516 -12.62061 -12.26942 -12.25389 -12.12378 -11.96778 -11.91252 -11.80281 -11.50851 -11.00523 -10.74432 -10.06167 -9.69709 -9.63157 -9.07406 -8.00558 -5.30461 -0.17217 0.00825 1.42422 1.46472 1.52430 1.61910 1.91576 2.39060 2.53099 2.76050 3.24003 3.31835 3.37315 3.48463 3.58706 3.69377 3.87666 3.97871 3.99781 4.06105 4.11938 4.19383 4.29079 4.34585 4.37661 4.52878 4.68094 4.73831 4.79514 4.82763 4.86001 4.89428 4.93028 4.99492 5.02838 5.07712 5.15062 5.19356 5.25195 5.36795 5.38013 5.42640 5.48573 5.72209 6.20988 6.60929 7.19253 7.27612 7.99176 8.26311 9.22430 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003104 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.416656 B = 9018.256040 C =10927.022471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 H 0.157 0.843 4 C 0.518 3.482 5 O -0.582 6.582 6 N -0.608 5.608 7 C 0.092 3.908 8 C -0.120 4.120 9 C -0.118 4.118 10 C 0.138 3.862 11 H 0.047 0.953 12 C 0.155 3.845 13 N -0.736 5.736 14 C -0.253 4.253 15 H 0.066 0.934 16 C -0.068 4.068 17 N -0.965 5.965 18 Si 0.974 3.026 19 H -0.273 1.273 20 H -0.288 1.288 21 H -0.284 1.284 22 C -0.053 4.053 23 C -0.075 4.075 24 C -0.116 4.116 25 C 0.048 3.952 26 F -0.141 7.141 27 C 0.034 3.966 28 F -0.149 7.149 29 C -0.106 4.106 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.071 0.929 39 H -0.006 1.006 40 H 0.022 0.978 41 H 0.376 0.624 42 H 0.254 0.746 43 H 0.189 0.811 44 H 0.181 0.819 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 22.197 19.851 30.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.074 4.074 3 H 0.174 0.826 4 C 0.308 3.692 5 O -0.461 6.461 6 N -0.341 5.341 7 C -0.029 4.029 8 C -0.158 4.158 9 C -0.156 4.156 10 C 0.033 3.967 11 H 0.065 0.935 12 C 0.028 3.972 13 N -0.379 5.379 14 C -0.384 4.384 15 H 0.084 0.916 16 C -0.261 4.261 17 N -0.615 5.615 18 Si 0.803 3.197 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.211 1.211 22 C -0.054 4.054 23 C -0.092 4.092 24 C -0.134 4.134 25 C 0.028 3.972 26 F -0.120 7.120 27 C 0.014 3.986 28 F -0.128 7.128 29 C -0.125 4.125 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.129 0.871 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.012 0.988 40 H 0.040 0.960 41 H 0.209 0.791 42 H 0.063 0.937 43 H 0.206 0.794 44 H 0.198 0.802 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.598 21.438 20.068 29.585 hybrid contribution 0.175 -2.487 -0.603 2.565 sum -3.423 18.951 19.465 27.382 Atomic orbital electron populations 1.21986 0.90122 1.02760 1.05594 1.20359 0.99112 1.01336 0.86560 0.82576 1.21027 0.79492 0.84266 0.84437 1.90776 1.39673 1.28970 1.86663 1.48596 1.56059 1.25451 1.04002 1.22839 0.96795 0.85100 0.98162 1.22838 1.03882 0.95035 0.94057 1.22551 1.01599 0.95559 0.95924 1.21477 0.98041 0.92297 0.84855 0.93483 1.20902 0.96228 0.92413 0.87693 1.42313 1.52269 1.22291 1.21069 1.19497 1.19147 0.97209 1.02584 0.91571 1.25548 1.00539 1.02637 0.97376 1.69794 1.37597 1.41039 1.13053 0.85212 0.78246 0.79433 0.76857 1.19897 1.21412 1.21060 1.19515 0.97417 0.92345 0.96126 1.21444 0.94129 1.02282 0.91375 1.21439 1.01124 0.90587 1.00285 1.18026 1.00603 0.93406 0.85193 1.91488 1.87504 1.82427 1.50539 1.18006 1.02938 0.79575 0.98045 1.91470 1.91437 1.34953 1.94953 1.20890 1.00887 0.96104 0.94647 0.88210 0.89128 0.94224 0.86254 0.89525 0.89656 0.87057 0.91322 0.90993 0.98790 0.95975 0.79145 0.93706 0.79417 0.80180 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.84 71.98 0.64 -1.09 16 2 C -0.05 -0.80 2.28 -12.29 -0.03 -0.83 16 3 H 0.16 0.89 7.50 -2.39 -0.02 0.87 16 4 C 0.52 14.12 6.81 87.66 0.60 14.71 16 5 O -0.58 -22.98 14.33 -3.03 -0.04 -23.02 16 6 N -0.61 -15.28 3.05 -788.04 -2.41 -17.68 16 7 C 0.09 1.23 5.30 86.85 0.46 1.69 16 8 C -0.12 -1.80 7.09 31.99 0.23 -1.57 16 9 C -0.12 -3.22 6.08 31.78 0.19 -3.03 16 10 C 0.14 4.72 2.92 45.34 0.13 4.85 16 11 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 12 C 0.16 7.02 5.63 86.38 0.49 7.51 16 13 N -0.74 -40.09 5.37 -343.45 -1.84 -41.93 16 14 C -0.25 -15.06 9.99 84.03 0.84 -14.22 16 15 H 0.07 3.88 7.83 -2.92 -0.02 3.85 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 17 N -0.96 -60.25 13.06 21.65 0.28 -59.97 16 18 Si 0.97 47.85 29.55 68.60 2.03 49.88 16 19 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 21 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 22 C -0.05 -1.00 4.39 -19.87 -0.09 -1.09 16 23 C -0.07 -0.92 9.67 22.27 0.22 -0.70 16 24 C -0.12 -1.71 10.02 22.31 0.22 -1.48 16 25 C 0.05 1.11 7.31 22.41 0.16 1.28 16 26 F -0.14 -3.58 17.18 44.97 0.77 -2.80 16 27 C 0.03 0.96 7.31 22.41 0.16 1.13 16 28 F -0.15 -4.87 17.18 44.97 0.77 -4.10 16 29 C -0.11 -2.80 7.91 22.30 0.18 -2.62 16 30 H 0.10 0.65 8.14 -2.38 -0.02 0.64 16 31 H 0.09 0.78 5.21 -2.38 -0.01 0.77 16 32 H 0.04 0.69 7.37 -2.39 -0.02 0.67 16 33 H 0.12 0.62 7.51 -2.39 -0.02 0.60 16 34 H 0.09 0.97 6.90 -2.39 -0.02 0.96 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 2.08 7.82 -2.39 -0.02 2.06 16 38 H 0.07 2.11 8.14 -2.38 -0.02 2.10 16 39 H -0.01 -0.30 6.97 -2.39 -0.02 -0.32 16 40 H 0.02 0.99 8.09 -2.39 -0.02 0.97 16 41 H 0.38 21.22 7.52 -92.71 -0.70 20.52 16 42 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.19 0.53 7.94 -2.91 -0.02 0.51 16 44 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.12 3.63 7.51 -2.91 -0.02 3.61 16 Total: -1.00 -84.12 373.34 4.76 -79.37 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.33 Total: 19.33 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.87 Total: 0.93 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -3.97 Total: -119.59 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.04 Total: -23.02 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 1.55 Total: -6.90 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -84.12 4.76 -79.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267969962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.973 kcal (2) G-P(sol) polarization free energy of solvation -84.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds