Wall clock time and date at job start Tue Mar 31 2020 21:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.80463 * 2 1 4 4 C 1.55115 * 110.83040 * 123.33425 * 2 1 3 5 5 N 1.48118 * 103.31438 * 155.59459 * 4 2 1 6 6 C 1.34779 * 127.03265 * 140.80352 * 5 4 2 7 7 O 1.21275 * 119.99975 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99548 * 359.95372 * 6 5 4 9 9 S 1.81002 * 109.46849 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00195 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99908 * 359.97438 * 10 9 8 12 12 C 1.38803 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99948 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99748 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47418 * 59.99595 * 14 12 10 16 16 H 1.48503 * 109.46850 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47081 * 299.99444 * 14 12 10 18 18 C 1.47481 * 105.93340 * 320.76343 * 5 4 2 19 19 C 1.54004 * 107.08499 * 25.44944 * 18 5 4 20 20 H 1.09000 * 110.32677 * 239.70013 * 19 18 5 21 21 N 1.46898 * 110.32871 * 117.58488 * 19 18 5 22 22 C 1.46899 * 111.00080 * 87.83545 * 21 19 18 23 23 C 1.50697 * 109.46930 * 179.97438 * 22 21 19 24 24 C 1.39870 * 125.89807 * 95.00240 * 23 22 21 25 25 C 1.35315 * 107.92205 * 180.02562 * 24 23 22 26 26 N 1.34948 * 107.74520 * 0.02562 * 25 24 23 27 27 C 1.46502 * 126.03993 * 179.97438 * 26 25 24 28 28 N 1.30839 * 125.90330 * 275.04057 * 23 22 21 29 29 H 1.08995 * 109.47306 * 183.29731 * 1 2 3 30 30 H 1.09005 * 109.46545 * 303.29250 * 1 2 3 31 31 H 1.08993 * 109.47169 * 63.28763 * 1 2 3 32 32 H 1.09001 * 110.58416 * 37.15935 * 4 2 1 33 33 H 1.08991 * 110.68503 * 274.08167 * 4 2 1 34 34 H 1.09000 * 109.47334 * 299.99842 * 8 6 5 35 35 H 1.08997 * 109.47712 * 60.00827 * 8 6 5 36 36 H 0.96999 * 120.00010 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.91489 * 266.08337 * 18 5 4 38 38 H 1.09004 * 109.90835 * 144.80856 * 18 5 4 39 39 H 1.00904 * 110.99963 * 323.87779 * 21 19 18 40 40 H 1.08998 * 109.47202 * 60.00181 * 22 21 19 41 41 H 1.08998 * 109.47133 * 299.99874 * 22 21 19 42 42 H 1.08001 * 126.04288 * 0.02562 * 24 23 22 43 43 H 1.08007 * 126.13167 * 179.73081 * 25 24 23 44 44 H 1.09008 * 109.47064 * 89.99169 * 27 26 25 45 45 H 1.08998 * 109.47431 * 209.99518 * 27 26 25 46 46 H 1.08999 * 109.46741 * 329.99840 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0816 -0.7967 1.2112 5 7 3.4296 -1.2130 0.7604 6 6 4.5561 -1.2535 1.4992 7 8 5.5980 -1.6181 0.9969 8 6 4.5210 -0.8453 2.9495 9 16 6.1770 -1.0072 3.6620 10 6 5.8527 -0.4819 5.3123 11 1 4.8542 -0.1863 5.5986 12 6 6.8808 -0.4469 6.2442 13 7 8.0980 -0.8066 5.8952 14 14 6.5368 0.1094 7.9939 15 1 5.5257 -0.7876 8.6088 16 1 7.7922 0.0574 8.7856 17 1 6.0195 1.5013 7.9782 18 6 3.2869 -1.5750 -0.6622 19 6 2.0775 -0.7938 -1.2087 20 1 1.3202 -1.4822 -1.5839 21 7 2.5023 0.1255 -2.2728 22 6 2.4910 -0.5424 -3.5811 23 6 2.9308 0.4298 -4.6452 24 6 4.2314 0.5710 -5.1400 25 6 4.2160 1.5447 -6.0795 26 7 2.9506 2.0038 -6.1754 27 6 2.4839 3.0635 -7.0730 28 7 2.1622 1.2881 -5.2653 29 1 -0.3633 -1.0259 0.0591 30 1 -0.3632 0.5641 0.8591 31 1 -0.3633 0.4619 -0.9179 32 1 1.4578 -1.6674 1.4134 33 1 2.1506 -0.1589 2.0923 34 1 4.1921 0.1910 3.0274 35 1 3.8276 -1.4883 3.4913 36 1 8.8164 -0.7825 6.5465 37 1 3.1104 -2.6464 -0.7567 38 1 4.1875 -1.2948 -1.2086 39 1 3.4117 0.5143 -2.0731 40 1 1.4822 -0.8909 -3.8025 41 1 3.1728 -1.3925 -3.5609 42 1 5.0953 0.0033 -4.8275 43 1 5.0653 1.8954 -6.6473 44 1 2.1687 2.6249 -8.0199 45 1 1.6421 3.5829 -6.6150 46 1 3.2936 3.7708 -7.2519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274173314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:29 Heat of formation + Delta-G solvation = 51.967146 kcal Electronic energy + Delta-G solvation = -26059.958348 eV Core-core repulsion = 22305.773560 eV Total energy + Delta-G solvation = -3754.184788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41833 -39.99674 -37.85441 -35.51228 -33.39676 -32.45237 -32.40055 -30.47492 -30.05687 -28.54368 -26.79642 -26.28975 -25.46276 -24.72488 -22.49757 -21.41641 -20.64305 -19.78259 -19.33057 -17.67916 -17.25743 -16.73540 -16.25858 -15.79279 -15.60405 -15.18209 -14.99526 -14.79040 -14.31101 -14.12954 -13.90423 -13.81114 -13.69726 -13.39805 -13.20978 -12.92513 -12.77583 -12.65716 -12.52665 -12.33980 -12.08873 -12.02928 -11.78079 -11.27872 -11.11965 -11.02727 -11.02601 -10.88317 -10.82211 -10.73608 -9.81026 -9.58049 -9.40036 -9.04670 -8.92687 -8.80434 -8.35058 -8.22225 -6.48837 -6.20119 -3.90789 1.60536 2.21475 2.46701 2.91664 3.07882 3.24673 3.26969 3.30306 3.62640 3.98336 4.16595 4.21645 4.36850 4.40033 4.52839 4.65384 4.74477 4.85029 4.97105 5.00076 5.02555 5.10421 5.14847 5.20623 5.29737 5.36037 5.41941 5.43547 5.52747 5.55936 5.59942 5.67364 5.71420 5.79995 5.85072 5.91397 6.01988 6.12402 6.15847 6.34538 6.38921 6.70749 6.77192 7.08295 7.47846 7.60634 7.72161 8.36478 8.57707 9.24915 10.87264 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002057 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.004368 B =13608.916580 C =14319.984826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.090 0.910 4 C 0.101 3.899 5 N -0.626 5.626 6 C 0.552 3.448 7 O -0.517 6.517 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.079 3.921 19 C 0.081 3.919 20 H 0.095 0.905 21 N -0.671 5.671 22 C 0.139 3.861 23 C 0.076 3.924 24 C -0.267 4.267 25 C 0.051 3.949 26 N -0.379 5.379 27 C 0.102 3.898 28 N -0.276 5.276 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.349 0.651 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.147 0.853 43 H 0.173 0.827 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.843 4.329 -24.167 29.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.113 4.113 3 H 0.109 0.891 4 C -0.022 4.022 5 N -0.363 5.363 6 C 0.340 3.660 7 O -0.392 6.392 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.046 4.046 19 C -0.030 4.030 20 H 0.113 0.887 21 N -0.303 5.303 22 C 0.008 3.992 23 C -0.091 4.091 24 C -0.296 4.296 25 C -0.094 4.094 26 N -0.161 5.161 27 C -0.039 4.039 28 N -0.099 5.099 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.169 0.831 40 H 0.105 0.895 41 H 0.072 0.928 42 H 0.165 0.835 43 H 0.190 0.810 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.835 4.620 -25.127 30.057 hybrid contribution 0.311 0.001 1.717 1.745 sum -15.524 4.620 -23.410 28.467 Atomic orbital electron populations 1.21683 0.93643 1.01806 1.02338 1.22309 0.96132 1.00114 0.92765 0.89128 1.22695 0.83109 0.98572 0.97843 1.48742 1.08667 1.68192 1.10739 1.20024 0.81516 0.76759 0.87660 1.90704 1.29580 1.46148 1.72722 1.23499 1.08179 1.04070 0.93922 1.85391 1.01893 1.87403 1.08704 1.22820 0.98111 1.51739 0.95671 0.90971 1.24992 0.94431 0.94908 0.99251 1.70009 1.00335 1.44707 1.35244 0.86223 0.77782 0.79205 0.82286 1.19930 1.20817 1.19930 1.22768 0.98958 0.99526 0.83366 1.22643 0.95831 0.93068 0.91507 0.88687 1.60562 1.35059 1.34322 1.00357 1.20242 1.01606 0.91861 0.85460 1.22115 0.92206 0.97076 0.97734 1.21480 0.98364 1.05538 1.04242 1.22529 0.88802 0.97507 1.00570 1.48556 1.06227 1.30082 1.31280 1.21845 1.01972 0.87958 0.92164 1.77350 1.18490 1.08823 1.05251 0.92643 0.92344 0.91805 0.90950 0.89679 0.89274 0.89300 0.92139 0.91730 0.90669 0.83126 0.89483 0.92783 0.83477 0.80973 0.90854 0.89261 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 2 C -0.09 -0.87 3.39 -88.65 -0.30 -1.17 16 3 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 4 C 0.10 1.11 6.40 -2.03 -0.01 1.10 16 5 N -0.63 -9.15 3.29 -169.66 -0.56 -9.71 16 6 C 0.55 10.86 7.91 -10.98 -0.09 10.77 16 7 O -0.52 -12.20 16.20 5.56 0.09 -12.11 16 8 C -0.15 -3.05 5.09 36.01 0.18 -2.87 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 14 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.08 0.94 6.59 -2.98 -0.02 0.92 16 19 C 0.08 0.74 2.89 -66.34 -0.19 0.55 16 20 H 0.10 0.74 7.54 -51.93 -0.39 0.35 16 21 N -0.67 -6.55 6.22 -106.54 -0.66 -7.21 16 22 C 0.14 1.25 6.09 -4.98 -0.03 1.22 16 23 C 0.08 0.81 6.73 -82.41 -0.55 0.25 16 24 C -0.27 -2.54 10.74 -40.01 -0.43 -2.97 16 25 C 0.05 0.42 11.49 -17.22 -0.20 0.22 16 26 N -0.38 -3.42 4.01 -68.16 -0.27 -3.69 16 27 C 0.10 0.48 11.47 59.85 0.69 1.16 16 28 N -0.28 -3.24 12.57 33.67 0.42 -2.81 16 29 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16 33 H 0.08 0.94 7.23 -51.93 -0.38 0.57 16 34 H 0.09 1.73 7.91 -51.92 -0.41 1.32 16 35 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.99 7.51 -51.93 -0.39 0.60 16 39 H 0.35 3.78 8.18 -39.29 -0.32 3.45 16 40 H 0.09 0.75 8.07 -51.93 -0.42 0.33 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 44 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 45 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 397.91 15.07 6.00 6.00 Total: -1.00 -37.02 397.91 -9.24 -46.26 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.34 Total: 0.82 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -0.42 Total: -4.57 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.34 Total: -49.02 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.02 -9.24 -46.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.228 kcal (2) G-P(sol) polarization free energy of solvation -37.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds