Wall clock time and date at job start Tue Mar 31 2020 21:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.80463 * 2 1 4 4 C 1.55115 * 110.83040 * 123.33425 * 2 1 3 5 5 N 1.48118 * 103.31438 * 155.59459 * 4 2 1 6 6 C 1.34779 * 127.03265 * 140.80352 * 5 4 2 7 7 O 1.21275 * 119.99975 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99548 * 359.95372 * 6 5 4 9 9 S 1.81002 * 109.46849 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00195 * 180.02562 * 9 8 6 11 11 H 1.07997 * 119.99908 * 359.97438 * 10 9 8 12 12 C 1.38803 * 120.00035 * 180.02562 * 10 9 8 13 13 N 1.31628 * 119.99948 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99748 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47418 * 59.99595 * 14 12 10 16 16 H 1.48503 * 109.46850 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47081 * 299.99444 * 14 12 10 18 18 C 1.47481 * 105.93340 * 320.76343 * 5 4 2 19 19 C 1.54004 * 107.08499 * 25.44944 * 18 5 4 20 20 H 1.09000 * 110.32677 * 239.70013 * 19 18 5 21 21 N 1.46898 * 110.32871 * 117.58488 * 19 18 5 22 22 C 1.46899 * 111.00080 * 87.83545 * 21 19 18 23 23 C 1.50697 * 109.46930 * 179.97438 * 22 21 19 24 24 C 1.39870 * 125.89807 * 95.00240 * 23 22 21 25 25 C 1.35315 * 107.92205 * 180.02562 * 24 23 22 26 26 N 1.34948 * 107.74520 * 0.02562 * 25 24 23 27 27 C 1.46502 * 126.03993 * 179.97438 * 26 25 24 28 28 N 1.30839 * 125.90330 * 275.04057 * 23 22 21 29 29 H 1.08995 * 109.47306 * 183.29731 * 1 2 3 30 30 H 1.09005 * 109.46545 * 303.29250 * 1 2 3 31 31 H 1.08993 * 109.47169 * 63.28763 * 1 2 3 32 32 H 1.09001 * 110.58416 * 37.15935 * 4 2 1 33 33 H 1.08991 * 110.68503 * 274.08167 * 4 2 1 34 34 H 1.09000 * 109.47334 * 299.99842 * 8 6 5 35 35 H 1.08997 * 109.47712 * 60.00827 * 8 6 5 36 36 H 0.96999 * 120.00010 * 180.02562 * 13 12 10 37 37 H 1.09000 * 109.91489 * 266.08337 * 18 5 4 38 38 H 1.09004 * 109.90835 * 144.80856 * 18 5 4 39 39 H 1.00904 * 110.99963 * 323.87779 * 21 19 18 40 40 H 1.08998 * 109.47202 * 60.00181 * 22 21 19 41 41 H 1.08998 * 109.47133 * 299.99874 * 22 21 19 42 42 H 1.08001 * 126.04288 * 0.02562 * 24 23 22 43 43 H 1.08007 * 126.13167 * 179.73081 * 25 24 23 44 44 H 1.09008 * 109.47064 * 89.99169 * 27 26 25 45 45 H 1.08998 * 109.47431 * 209.99518 * 27 26 25 46 46 H 1.08999 * 109.46741 * 329.99840 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0816 -0.7967 1.2112 5 7 3.4296 -1.2130 0.7604 6 6 4.5561 -1.2535 1.4992 7 8 5.5980 -1.6181 0.9969 8 6 4.5210 -0.8453 2.9495 9 16 6.1770 -1.0072 3.6620 10 6 5.8527 -0.4819 5.3123 11 1 4.8542 -0.1863 5.5986 12 6 6.8808 -0.4469 6.2442 13 7 8.0980 -0.8066 5.8952 14 14 6.5368 0.1094 7.9939 15 1 5.5257 -0.7876 8.6088 16 1 7.7922 0.0574 8.7856 17 1 6.0195 1.5013 7.9782 18 6 3.2869 -1.5750 -0.6622 19 6 2.0775 -0.7938 -1.2087 20 1 1.3202 -1.4822 -1.5839 21 7 2.5023 0.1255 -2.2728 22 6 2.4910 -0.5424 -3.5811 23 6 2.9308 0.4298 -4.6452 24 6 4.2314 0.5710 -5.1400 25 6 4.2160 1.5447 -6.0795 26 7 2.9506 2.0038 -6.1754 27 6 2.4839 3.0635 -7.0730 28 7 2.1622 1.2881 -5.2653 29 1 -0.3633 -1.0259 0.0591 30 1 -0.3632 0.5641 0.8591 31 1 -0.3633 0.4619 -0.9179 32 1 1.4578 -1.6674 1.4134 33 1 2.1506 -0.1589 2.0923 34 1 4.1921 0.1910 3.0274 35 1 3.8276 -1.4883 3.4913 36 1 8.8164 -0.7825 6.5465 37 1 3.1104 -2.6464 -0.7567 38 1 4.1875 -1.2948 -1.2086 39 1 3.4117 0.5143 -2.0731 40 1 1.4822 -0.8909 -3.8025 41 1 3.1728 -1.3925 -3.5609 42 1 5.0953 0.0033 -4.8275 43 1 5.0653 1.8954 -6.6473 44 1 2.1687 2.6249 -8.0199 45 1 1.6421 3.5829 -6.6150 46 1 3.2936 3.7708 -7.2519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274173314.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:28 Heat of formation + Delta-G solvation = 25.560136 kcal Electronic energy + Delta-G solvation = -26061.103442 eV Core-core repulsion = 22305.773560 eV Total energy + Delta-G solvation = -3755.329882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08081 -41.16184 -39.13303 -36.38546 -34.59139 -34.18702 -33.28645 -31.52256 -31.02161 -29.51895 -27.80255 -27.47925 -27.14532 -25.47897 -23.40382 -22.04105 -21.43714 -20.75202 -20.51928 -19.58241 -18.12172 -17.84934 -17.32977 -16.88512 -16.71973 -16.50517 -16.35376 -16.03044 -15.70233 -15.03314 -14.91212 -14.71617 -14.66418 -14.42665 -14.31645 -13.91307 -13.60862 -13.47388 -13.39282 -13.24927 -13.18476 -13.16483 -12.89081 -12.86387 -12.72455 -12.63000 -12.06497 -11.88390 -11.78388 -11.58852 -11.53028 -11.13159 -10.97729 -10.29711 -10.26774 -9.93883 -9.52421 -9.30034 -8.68625 -8.34759 -6.13721 0.94665 1.22819 1.44124 1.44284 1.54594 1.54856 1.68465 1.76380 2.06659 2.27159 2.99137 3.17972 3.26489 3.49270 3.56846 3.60980 3.88476 3.99819 4.08606 4.14846 4.19283 4.24343 4.35292 4.40907 4.43038 4.44609 4.56476 4.61316 4.67669 4.69652 4.71568 4.79146 4.82641 4.89467 4.93810 5.14051 5.15315 5.24173 5.35832 5.41061 5.50211 5.66718 6.01612 6.16527 6.19275 6.23296 6.40399 6.78336 7.05988 7.09582 8.74300 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002057 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.004368 B =13608.916580 C =14319.984826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 H 0.075 0.925 4 C 0.095 3.905 5 N -0.618 5.618 6 C 0.549 3.451 7 O -0.568 6.568 8 C -0.119 4.119 9 S -0.150 6.150 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.261 1.261 16 H -0.278 1.278 17 H -0.262 1.262 18 C 0.076 3.924 19 C 0.093 3.907 20 H 0.119 0.881 21 N -0.673 5.673 22 C 0.142 3.858 23 C 0.062 3.938 24 C -0.293 4.293 25 C 0.059 3.941 26 N -0.383 5.383 27 C 0.093 3.907 28 N -0.316 5.316 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.271 0.729 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.341 0.659 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.152 0.848 43 H 0.209 0.791 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.349 5.102 -24.384 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.027 4.027 5 N -0.352 5.352 6 C 0.337 3.663 7 O -0.447 6.447 8 C -0.270 4.270 9 S 0.077 5.923 10 C -0.695 4.695 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.821 3.179 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.186 1.186 18 C -0.048 4.048 19 C -0.018 4.018 20 H 0.137 0.863 21 N -0.304 5.304 22 C 0.012 3.988 23 C -0.104 4.104 24 C -0.323 4.323 25 C -0.088 4.088 26 N -0.166 5.166 27 C -0.047 4.047 28 N -0.140 5.140 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.111 0.889 41 H 0.079 0.921 42 H 0.169 0.831 43 H 0.226 0.774 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.426 5.407 -25.379 31.825 hybrid contribution 1.006 -0.204 1.602 1.902 sum -17.420 5.203 -23.777 29.931 Atomic orbital electron populations 1.21636 0.91651 1.02928 1.02547 1.22252 0.97535 0.98920 0.91835 0.90613 1.23041 0.81202 0.99877 0.98602 1.48667 1.08659 1.66205 1.11704 1.19754 0.82228 0.76867 0.87417 1.90681 1.31755 1.48859 1.73438 1.23292 1.03513 1.05481 0.94758 1.85574 1.08550 1.87905 1.10256 1.23159 0.98789 1.51792 0.95717 0.89897 1.26150 0.93990 0.94645 1.04389 1.70179 1.01559 1.45971 1.37023 0.84992 0.77959 0.79216 0.75758 1.18564 1.20343 1.18635 1.23014 0.99631 1.00705 0.81462 1.22649 0.94874 0.92964 0.91293 0.86293 1.60590 1.34507 1.34488 1.00834 1.20266 1.02061 0.91736 0.84760 1.22375 0.92699 0.97249 0.98052 1.21725 0.98329 1.06823 1.05416 1.23102 0.89415 0.96444 0.99826 1.48915 1.06384 1.30253 1.31002 1.22174 1.03028 0.87600 0.91875 1.77253 1.19975 1.10031 1.06778 0.91095 0.91763 0.91966 0.88440 0.89582 0.87702 0.87502 0.91960 0.90544 0.92330 0.84058 0.88895 0.92059 0.83071 0.77445 0.89468 0.89585 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.17 71.98 0.66 -0.90 16 2 C -0.09 -1.41 3.39 -9.52 -0.03 -1.44 16 3 H 0.08 1.52 8.06 -2.39 -0.02 1.50 16 4 C 0.09 1.85 6.40 86.79 0.56 2.41 16 5 N -0.62 -17.47 3.29 -809.06 -2.66 -20.13 16 6 C 0.55 21.80 7.91 87.66 0.69 22.49 16 7 O -0.57 -27.83 16.20 -3.02 -0.05 -27.88 16 8 C -0.12 -4.98 5.09 71.24 0.36 -4.61 16 9 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 10 C -0.55 -31.63 9.50 67.96 0.65 -30.99 16 11 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 12 C 0.01 0.75 5.49 84.86 0.47 1.22 16 13 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 14 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 15 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 18 C 0.08 1.74 6.59 86.53 0.57 2.31 16 19 C 0.09 1.54 2.89 45.81 0.13 1.67 16 20 H 0.12 1.48 7.54 -2.39 -0.02 1.46 16 21 N -0.67 -12.61 6.22 -490.99 -3.06 -15.67 16 22 C 0.14 2.47 6.09 85.56 0.52 2.99 16 23 C 0.06 1.32 6.73 43.10 0.29 1.61 16 24 C -0.29 -5.51 10.74 21.99 0.24 -5.27 16 25 C 0.06 0.87 11.49 83.54 0.96 1.83 16 26 N -0.38 -6.48 4.01 -369.55 -1.48 -7.96 16 27 C 0.09 0.71 11.47 127.77 1.47 2.18 16 28 N -0.32 -7.32 12.57 -47.39 -0.60 -7.91 16 29 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.51 8.02 -2.39 -0.02 1.49 16 33 H 0.09 1.70 7.23 -2.39 -0.02 1.68 16 34 H 0.10 4.01 7.91 -2.40 -0.02 3.99 16 35 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.85 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.56 7.51 -2.38 -0.02 1.54 16 39 H 0.34 7.43 8.18 -89.69 -0.73 6.69 16 40 H 0.09 1.48 8.07 -2.39 -0.02 1.47 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.15 2.54 8.06 -2.91 -0.02 2.51 16 43 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -83.77 397.91 1.07 -82.69 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.24 Total: 21.39 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 7.53 Total: -4.51 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -7.51 Total: -107.87 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -83.77 1.07 -82.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274173314.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.255 kcal (2) G-P(sol) polarization free energy of solvation -83.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds