Wall clock time and date at job start Tue Mar 31 2020 21:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46789 * 2 1 4 4 N 1.46491 * 109.47580 * 120.00275 * 2 1 3 5 5 C 1.34773 * 120.00320 * 275.00399 * 4 2 1 6 6 O 1.21288 * 119.99893 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00356 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47089 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.46797 * 179.97438 * 8 7 5 10 10 C 1.38208 * 119.99714 * 264.71878 * 9 8 7 11 11 C 1.38427 * 119.99694 * 179.76937 * 10 9 8 12 12 F 1.35105 * 120.00301 * 180.27303 * 11 10 9 13 13 C 1.38477 * 119.99779 * 0.53644 * 11 10 9 14 14 C 1.38156 * 120.00327 * 359.71677 * 13 11 10 15 15 C 1.38427 * 119.99747 * 85.00012 * 9 8 7 16 16 F 1.35095 * 120.00319 * 359.97438 * 15 9 8 17 17 C 1.53003 * 109.47059 * 240.00589 * 2 1 3 18 18 C 1.53953 * 113.74126 * 156.67087 * 17 2 1 19 19 N 1.47578 * 86.11516 * 222.04611 * 18 17 2 20 20 C 1.36940 * 134.49135 * 204.63755 * 19 18 17 21 21 H 1.08003 * 120.00088 * 173.48318 * 20 19 18 22 22 C 1.38812 * 120.00050 * 353.48897 * 20 19 18 23 23 N 1.31613 * 119.99805 * 5.06392 * 22 20 19 24 24 Si 1.86799 * 120.00109 * 185.06175 * 22 20 19 25 25 H 1.48503 * 109.47031 * 94.98518 * 24 22 20 26 26 H 1.48496 * 109.47470 * 214.98888 * 24 22 20 27 27 H 1.48504 * 109.47247 * 334.98894 * 24 22 20 28 28 C 1.47579 * 91.01761 * 24.64069 * 19 18 17 29 29 H 1.09001 * 109.47175 * 59.99828 * 1 2 3 30 30 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46866 * 299.99475 * 1 2 3 32 32 H 0.97001 * 119.99761 * 94.99866 * 4 2 1 33 33 H 1.09003 * 109.46709 * 299.99560 * 7 5 4 34 34 H 1.08993 * 109.47400 * 59.99707 * 7 5 4 35 35 H 1.09003 * 109.47062 * 299.99436 * 8 7 5 36 36 H 1.09003 * 109.47290 * 59.99798 * 8 7 5 37 37 H 1.08000 * 120.00200 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.99656 * 179.70170 * 13 11 10 39 39 H 1.08000 * 120.00371 * 179.97438 * 14 13 11 40 40 H 1.08995 * 112.94435 * 288.40670 * 17 2 1 41 41 H 1.08997 * 113.76629 * 336.35026 * 18 17 2 42 42 H 1.08997 * 113.76550 * 107.74561 * 18 17 2 43 43 H 0.97001 * 120.00276 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.77334 * 221.05762 * 28 19 18 45 45 H 1.09006 * 113.76624 * 89.66146 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1472 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6491 -0.7290 3.5876 8 6 2.7012 0.2542 4.7587 9 6 3.2025 -0.4566 5.9894 10 6 2.3036 -0.9757 6.9019 11 6 2.7641 -1.6328 8.0299 12 9 1.8854 -2.1452 8.9191 13 6 4.1253 -1.7602 8.2496 14 6 5.0239 -1.2367 7.3401 15 6 4.5633 -0.5844 6.2088 16 9 5.4420 -0.0724 5.3194 17 6 2.0400 -0.7211 -1.2493 18 6 3.4667 -0.3143 -1.6609 19 7 2.9583 -0.3117 -3.0464 20 6 3.5328 -0.4673 -4.2797 21 1 2.9115 -0.5274 -5.1611 22 6 4.9136 -0.5481 -4.3970 23 7 5.6653 -0.5754 -3.3169 24 14 5.7048 -0.6180 -6.0876 25 1 6.1042 0.7503 -6.5042 26 1 6.9056 -1.4902 -6.0366 27 1 4.7336 -1.1696 -7.0663 28 6 1.5823 -0.0738 -2.5690 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 1.1524 33 1 1.9761 -1.5508 3.8324 34 1 3.6481 -1.1215 3.3985 35 1 3.3744 1.0758 4.5136 36 1 1.7022 0.6471 4.9480 37 1 1.2420 -0.8724 6.7327 38 1 4.4846 -2.2687 9.1321 39 1 6.0856 -1.3357 7.5117 40 1 1.8828 -1.7990 -1.2117 41 1 3.7640 0.6703 -1.3001 42 1 4.2152 -1.0830 -1.4690 43 1 6.6302 -0.6315 -3.3988 44 1 0.8264 -0.6504 -3.1021 45 1 1.3262 0.9816 -2.4750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276469177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:40 Heat of formation + Delta-G solvation = -61.526787 kcal Electronic energy + Delta-G solvation = -28205.113403 eV Core-core repulsion = 23859.874011 eV Total energy + Delta-G solvation = -4345.239392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.32020 -49.21644 -39.96000 -39.26738 -38.08015 -34.92059 -34.28973 -32.23147 -31.12912 -30.49889 -29.49354 -27.51103 -25.57259 -24.66361 -23.87432 -23.35329 -22.00238 -21.08144 -20.24195 -18.99627 -18.02804 -17.63246 -17.60138 -16.90167 -16.64901 -16.23901 -16.03491 -15.67030 -15.46272 -14.88918 -14.79219 -14.68301 -14.26595 -13.90044 -13.84995 -13.60479 -13.48314 -13.13224 -13.02938 -12.73102 -12.69533 -12.41596 -12.09047 -11.96121 -11.66697 -11.38598 -11.33216 -11.28959 -11.24080 -10.90241 -10.73272 -10.34296 -9.98138 -9.77337 -9.73190 -9.51697 -9.37164 -8.91502 -8.79323 -8.77658 -6.85780 -5.77797 -3.09046 0.51205 0.57181 2.76858 2.88939 3.32265 3.39277 3.44370 3.46311 3.72800 3.79640 4.10352 4.25489 4.45770 4.51973 4.67293 4.74352 4.88335 4.94576 5.12496 5.26599 5.28676 5.31709 5.37528 5.43999 5.51734 5.53966 5.55870 5.62290 5.66866 5.81537 5.87695 5.90477 5.94498 6.04405 6.25393 6.36009 6.36722 6.41407 6.60141 6.68134 6.82340 7.23957 7.35995 7.57119 7.68611 7.98446 8.37800 9.05046 9.71100 10.61493 11.39876 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002091 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.294180 B =13388.975106 C =14571.750830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.718 5.718 5 C 0.514 3.486 6 O -0.545 6.545 7 C -0.137 4.137 8 C -0.066 4.066 9 C -0.084 4.084 10 C -0.122 4.122 11 C 0.090 3.910 12 F -0.136 7.136 13 C -0.130 4.130 14 C -0.123 4.123 15 C 0.094 3.906 16 F -0.128 7.128 17 C -0.147 4.147 18 C 0.174 3.826 19 N -0.613 5.613 20 C -0.224 4.224 21 H 0.080 0.920 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.129 3.871 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.400 0.600 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.254 0.746 44 H 0.044 0.956 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 -3.997 24.592 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.105 0.895 4 N -0.368 5.368 5 C 0.300 3.700 6 O -0.423 6.423 7 C -0.177 4.177 8 C -0.104 4.104 9 C -0.086 4.086 10 C -0.141 4.141 11 C 0.070 3.930 12 F -0.115 7.115 13 C -0.149 4.149 14 C -0.142 4.142 15 C 0.075 3.925 16 F -0.106 7.106 17 C -0.167 4.167 18 C 0.049 3.951 19 N -0.339 5.339 20 C -0.352 4.352 21 H 0.098 0.902 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.003 3.997 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.233 0.767 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.105 0.895 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.602 -3.195 24.367 25.447 hybrid contribution 0.733 -0.458 -0.907 1.253 sum -5.868 -3.653 23.459 24.457 Atomic orbital electron populations 1.22127 0.95757 1.01656 1.02051 1.21087 0.93404 0.97612 0.83407 0.89497 1.46112 1.66830 1.14109 1.09735 1.20477 0.77585 0.87352 0.84618 1.90698 1.50459 1.15956 1.85192 1.21641 1.03792 0.99409 0.92880 1.20319 1.03643 0.97228 0.89195 1.19853 0.91224 0.99647 0.97832 1.20965 1.01182 0.98958 0.93015 1.17665 0.87162 0.98872 0.89269 1.91527 1.68366 1.84880 1.66697 1.20990 0.90964 1.01920 1.01045 1.21028 1.01334 0.98700 0.93094 1.17600 0.86728 0.98847 0.89358 1.91558 1.67888 1.84613 1.66557 1.23835 1.00969 0.99621 0.92302 1.22193 0.91511 0.98207 0.83233 1.45944 1.02679 1.83156 1.02131 1.19027 0.89820 1.42915 0.83397 0.90234 1.24827 0.95901 1.02422 0.97295 1.69832 1.04162 1.56179 1.26423 0.86138 0.78968 0.77476 0.83441 1.21621 1.21714 1.20552 1.22507 0.89766 0.96737 0.90731 0.91460 0.92803 0.92839 0.76651 0.88716 0.88527 0.89116 0.89233 0.83586 0.83779 0.83571 0.89457 0.95492 0.91501 0.93646 0.93821 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.29 37.16 0.35 -1.71 16 2 C 0.15 2.27 2.42 -67.93 -0.16 2.10 16 3 H 0.09 1.55 7.37 -51.93 -0.38 1.17 16 4 N -0.72 -9.24 5.08 -53.81 -0.27 -9.51 16 5 C 0.51 6.79 7.79 -10.99 -0.09 6.71 16 6 O -0.55 -9.23 15.65 5.55 0.09 -9.14 16 7 C -0.14 -1.29 5.68 -27.88 -0.16 -1.45 16 8 C -0.07 -0.63 4.41 -27.88 -0.12 -0.75 16 9 C -0.08 -0.71 5.14 -104.56 -0.54 -1.25 16 10 C -0.12 -0.91 9.66 -39.52 -0.38 -1.29 16 11 C 0.09 0.68 7.30 -39.42 -0.29 0.40 16 12 F -0.14 -1.15 17.27 2.25 0.04 -1.11 16 13 C -0.13 -0.84 10.02 -39.52 -0.40 -1.24 16 14 C -0.12 -0.85 10.02 -39.52 -0.40 -1.25 16 15 C 0.09 0.84 7.24 -39.42 -0.29 0.55 16 16 F -0.13 -1.37 16.57 2.25 0.04 -1.34 16 17 C -0.15 -2.60 3.50 -89.69 -0.31 -2.91 16 18 C 0.17 4.05 6.98 -2.97 -0.02 4.03 16 19 N -0.61 -15.78 3.70 -177.91 -0.66 -16.43 16 20 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 21 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -27.48 11.51 55.49 0.64 -26.84 16 24 Si 0.91 22.26 29.56 -169.99 -5.02 17.24 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 28 C 0.13 2.59 7.56 -2.98 -0.02 2.57 16 29 H 0.07 0.86 7.43 -51.93 -0.39 0.48 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 4.23 8.60 -40.82 -0.35 3.88 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.01 7.75 -51.93 -0.40 0.61 16 36 H 0.09 0.82 8.01 -51.93 -0.42 0.40 16 37 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.03 0.67 7.96 -51.93 -0.41 0.26 16 42 H 0.07 1.71 7.35 -51.93 -0.38 1.33 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 385.54 15.07 5.81 5.81 Total: -1.00 -33.65 385.54 -8.93 -42.58 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.50 Total: 1.06 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -3.08 Total: -2.31 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.29 Total: -52.79 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.08 Total: -2.45 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.65 -8.93 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276469177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.944 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds