Wall clock time and date at job start Tue Mar 31 2020 21:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46789 * 2 1 4 4 N 1.46491 * 109.47580 * 120.00275 * 2 1 3 5 5 C 1.34773 * 120.00320 * 275.00399 * 4 2 1 6 6 O 1.21288 * 119.99893 * 359.97438 * 5 4 2 7 7 C 1.50703 * 120.00356 * 179.97438 * 5 4 2 8 8 C 1.53000 * 109.47089 * 179.97438 * 7 5 4 9 9 C 1.50707 * 109.46797 * 179.97438 * 8 7 5 10 10 C 1.38208 * 119.99714 * 264.71878 * 9 8 7 11 11 C 1.38427 * 119.99694 * 179.76937 * 10 9 8 12 12 F 1.35105 * 120.00301 * 180.27303 * 11 10 9 13 13 C 1.38477 * 119.99779 * 0.53644 * 11 10 9 14 14 C 1.38156 * 120.00327 * 359.71677 * 13 11 10 15 15 C 1.38427 * 119.99747 * 85.00012 * 9 8 7 16 16 F 1.35095 * 120.00319 * 359.97438 * 15 9 8 17 17 C 1.53003 * 109.47059 * 240.00589 * 2 1 3 18 18 C 1.53953 * 113.74126 * 156.67087 * 17 2 1 19 19 N 1.47578 * 86.11516 * 222.04611 * 18 17 2 20 20 C 1.36940 * 134.49135 * 204.63755 * 19 18 17 21 21 H 1.08003 * 120.00088 * 173.48318 * 20 19 18 22 22 C 1.38812 * 120.00050 * 353.48897 * 20 19 18 23 23 N 1.31613 * 119.99805 * 5.06392 * 22 20 19 24 24 Si 1.86799 * 120.00109 * 185.06175 * 22 20 19 25 25 H 1.48503 * 109.47031 * 94.98518 * 24 22 20 26 26 H 1.48496 * 109.47470 * 214.98888 * 24 22 20 27 27 H 1.48504 * 109.47247 * 334.98894 * 24 22 20 28 28 C 1.47579 * 91.01761 * 24.64069 * 19 18 17 29 29 H 1.09001 * 109.47175 * 59.99828 * 1 2 3 30 30 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46866 * 299.99475 * 1 2 3 32 32 H 0.97001 * 119.99761 * 94.99866 * 4 2 1 33 33 H 1.09003 * 109.46709 * 299.99560 * 7 5 4 34 34 H 1.08993 * 109.47400 * 59.99707 * 7 5 4 35 35 H 1.09003 * 109.47062 * 299.99436 * 8 7 5 36 36 H 1.09003 * 109.47290 * 59.99798 * 8 7 5 37 37 H 1.08000 * 120.00200 * 0.02562 * 10 9 8 38 38 H 1.08000 * 119.99656 * 179.70170 * 13 11 10 39 39 H 1.08000 * 120.00371 * 179.97438 * 14 13 11 40 40 H 1.08995 * 112.94435 * 288.40670 * 17 2 1 41 41 H 1.08997 * 113.76629 * 336.35026 * 18 17 2 42 42 H 1.08997 * 113.76550 * 107.74561 * 18 17 2 43 43 H 0.97001 * 120.00276 * 180.02562 * 23 22 20 44 44 H 1.09000 * 113.77334 * 221.05762 * 28 19 18 45 45 H 1.09006 * 113.76624 * 89.66146 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1960 5 6 2.1472 -0.0184 2.3570 6 8 1.8590 1.1585 2.4115 7 6 2.6491 -0.7290 3.5876 8 6 2.7012 0.2542 4.7587 9 6 3.2025 -0.4566 5.9894 10 6 2.3036 -0.9757 6.9019 11 6 2.7641 -1.6328 8.0299 12 9 1.8854 -2.1452 8.9191 13 6 4.1253 -1.7602 8.2496 14 6 5.0239 -1.2367 7.3401 15 6 4.5633 -0.5844 6.2088 16 9 5.4420 -0.0724 5.3194 17 6 2.0400 -0.7211 -1.2493 18 6 3.4667 -0.3143 -1.6609 19 7 2.9583 -0.3117 -3.0464 20 6 3.5328 -0.4673 -4.2797 21 1 2.9115 -0.5274 -5.1611 22 6 4.9136 -0.5481 -4.3970 23 7 5.6653 -0.5754 -3.3169 24 14 5.7048 -0.6180 -6.0876 25 1 6.1042 0.7503 -6.5042 26 1 6.9056 -1.4902 -6.0366 27 1 4.7336 -1.1696 -7.0663 28 6 1.5823 -0.0738 -2.5690 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2491 -1.6318 1.1524 33 1 1.9761 -1.5508 3.8324 34 1 3.6481 -1.1215 3.3985 35 1 3.3744 1.0758 4.5136 36 1 1.7022 0.6471 4.9480 37 1 1.2420 -0.8724 6.7327 38 1 4.4846 -2.2687 9.1321 39 1 6.0856 -1.3357 7.5117 40 1 1.8828 -1.7990 -1.2117 41 1 3.7640 0.6703 -1.3001 42 1 4.2152 -1.0830 -1.4690 43 1 6.6302 -0.6315 -3.3988 44 1 0.8264 -0.6504 -3.1021 45 1 1.3262 0.9816 -2.4750 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276469177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:39 Heat of formation + Delta-G solvation = -81.471063 kcal Electronic energy + Delta-G solvation = -28205.978251 eV Core-core repulsion = 23859.874011 eV Total energy + Delta-G solvation = -4346.104241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.94956 -49.92321 -41.08010 -40.04585 -39.55837 -36.22190 -35.09470 -34.18225 -32.15955 -31.29173 -30.31402 -29.33222 -26.78268 -26.05036 -25.46857 -23.96601 -23.09674 -22.20740 -21.39503 -20.50468 -18.76471 -18.66751 -18.33335 -18.24714 -17.77128 -17.34318 -16.91543 -16.84232 -16.43912 -16.32811 -15.75436 -15.57859 -15.38903 -15.17931 -14.88023 -14.75471 -14.45305 -14.36178 -13.92291 -13.75460 -13.58429 -13.45824 -13.36343 -13.24675 -13.08404 -12.89049 -12.70528 -12.62003 -12.51115 -12.07871 -11.98190 -11.93378 -11.72931 -11.49581 -11.24689 -10.89141 -10.80594 -10.11478 -9.97868 -9.54236 -8.92221 -7.93374 -5.26035 -0.09391 0.02393 1.43817 1.46314 1.55015 1.71199 2.20278 2.39587 2.46419 3.13115 3.19914 3.27338 3.38576 3.48609 3.64960 3.74131 3.89031 3.97932 4.00414 4.08605 4.20515 4.24974 4.31675 4.51133 4.59866 4.63813 4.73833 4.75114 4.77313 4.84326 4.88670 4.96924 5.01530 5.02527 5.02652 5.13362 5.14317 5.22911 5.24690 5.35385 5.50054 5.58030 5.68707 5.78312 5.92506 6.64917 6.90507 7.33917 7.59441 8.56117 9.24289 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002091 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.294180 B =13388.975106 C =14571.750830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.158 3.842 3 H 0.055 0.945 4 N -0.713 5.713 5 C 0.511 3.489 6 O -0.586 6.586 7 C -0.127 4.127 8 C -0.062 4.062 9 C -0.089 4.089 10 C -0.120 4.120 11 C 0.081 3.919 12 F -0.141 7.141 13 C -0.122 4.122 14 C -0.119 4.119 15 C 0.073 3.927 16 F -0.145 7.145 17 C -0.108 4.108 18 C 0.171 3.829 19 N -0.645 5.645 20 C -0.235 4.235 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.978 3.022 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.264 1.264 28 C 0.129 3.871 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.107 0.893 41 H 0.001 0.999 42 H 0.038 0.962 43 H 0.248 0.752 44 H 0.066 0.934 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.088 -5.620 25.443 27.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.073 0.927 4 N -0.364 5.364 5 C 0.299 3.701 6 O -0.467 6.467 7 C -0.167 4.167 8 C -0.100 4.100 9 C -0.090 4.090 10 C -0.138 4.138 11 C 0.062 3.938 12 F -0.119 7.119 13 C -0.141 4.141 14 C -0.138 4.138 15 C 0.054 3.946 16 F -0.123 7.123 17 C -0.128 4.128 18 C 0.045 3.955 19 N -0.372 5.372 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.806 3.194 25 H -0.218 1.218 26 H -0.220 1.220 27 H -0.188 1.188 28 C 0.004 3.996 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.250 0.750 33 H 0.145 0.855 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.178 0.822 38 H 0.187 0.813 39 H 0.183 0.817 40 H 0.125 0.875 41 H 0.019 0.981 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.064 -4.843 25.223 26.920 hybrid contribution 1.149 0.071 -1.117 1.604 sum -6.915 -4.771 24.105 25.528 Atomic orbital electron populations 1.22033 0.93301 1.03121 1.02161 1.20794 0.95086 0.95687 0.83180 0.92651 1.46030 1.66601 1.14725 1.09026 1.21127 0.76618 0.86929 0.85459 1.90682 1.52245 1.17865 1.85867 1.21639 1.04515 0.99740 0.90779 1.20206 1.03169 0.96717 0.89876 1.19708 0.91274 1.00272 0.97746 1.21069 1.01759 0.98395 0.92616 1.17825 0.87627 0.99071 0.89266 1.91519 1.68616 1.84977 1.66834 1.21265 0.90362 1.00995 1.01433 1.21244 1.02526 0.97789 0.92204 1.17918 0.86793 0.99898 0.90030 1.91515 1.68441 1.85081 1.67307 1.23457 0.96053 1.00632 0.92669 1.22074 0.94141 0.96093 0.83195 1.46390 1.05336 1.83381 1.02082 1.19461 0.90355 1.41722 0.84840 0.89639 1.25696 0.96614 1.03019 1.00957 1.70024 1.03873 1.57869 1.28477 0.85068 0.77919 0.77072 0.79364 1.21792 1.21997 1.18801 1.22700 0.87752 0.97616 0.91560 0.91088 0.90584 0.93060 0.75025 0.85467 0.88069 0.91589 0.89005 0.82169 0.81333 0.81668 0.87492 0.98115 0.94404 0.94308 0.91622 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.29 71.98 0.67 -2.85 16 2 C 0.16 4.66 2.42 45.00 0.11 4.77 16 3 H 0.06 2.02 7.37 -2.39 -0.02 2.00 16 4 N -0.71 -17.58 5.08 -442.53 -2.25 -19.83 16 5 C 0.51 13.28 7.79 87.66 0.68 13.97 16 6 O -0.59 -20.18 15.65 -3.05 -0.05 -20.23 16 7 C -0.13 -2.25 5.68 29.85 0.17 -2.08 16 8 C -0.06 -1.16 4.41 29.85 0.13 -1.03 16 9 C -0.09 -1.43 5.14 -19.82 -0.10 -1.53 16 10 C -0.12 -1.58 9.66 22.31 0.22 -1.37 16 11 C 0.08 1.08 7.30 22.37 0.16 1.24 16 12 F -0.14 -2.10 17.27 44.97 0.78 -1.32 16 13 C -0.12 -1.28 10.02 22.31 0.22 -1.06 16 14 C -0.12 -1.44 10.02 22.31 0.22 -1.22 16 15 C 0.07 1.25 7.24 22.37 0.16 1.41 16 16 F -0.14 -3.18 16.57 44.97 0.74 -2.43 16 17 C -0.11 -3.72 3.50 -10.13 -0.04 -3.75 16 18 C 0.17 8.18 6.98 86.48 0.60 8.78 16 19 N -0.65 -33.44 3.70 -716.77 -2.65 -36.09 16 20 C -0.24 -13.38 10.70 84.03 0.90 -12.48 16 21 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 22 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 23 N -0.95 -58.73 11.51 21.65 0.25 -58.48 16 24 Si 0.98 46.28 29.56 68.60 2.03 48.31 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 28 C 0.13 5.00 7.56 86.48 0.65 5.66 16 29 H 0.07 1.64 7.43 -2.39 -0.02 1.62 16 30 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 7.96 8.60 -92.71 -0.80 7.16 16 33 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.56 7.75 -2.39 -0.02 1.54 16 36 H 0.09 1.65 8.01 -2.39 -0.02 1.63 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.17 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 41 H 0.00 0.05 7.96 -2.39 -0.02 0.04 16 42 H 0.04 2.01 7.35 -2.39 -0.02 1.99 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.04 1.56 8.06 -2.38 -0.02 1.54 16 Total: -1.00 -75.29 385.54 4.30 -70.99 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.21 Total: 14.22 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 5.24 Total: 4.86 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -4.65 Total: -114.40 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 1.52 Total: -3.75 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -75.29 4.30 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276469177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.481 kcal (2) G-P(sol) polarization free energy of solvation -75.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds