Wall clock time and date at job start Tue Mar 31 2020 21:20:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09001 * 109.47152 * 2 1
4 4 C 1.50693 * 109.47496 * 120.00150 * 2 1 3
5 5 O 1.21278 * 120.00272 * 119.99872 * 4 2 1
6 6 N 1.34780 * 119.99927 * 300.00400 * 4 2 1
7 7 C 1.46503 * 120.00150 * 179.97438 * 6 4 2
8 8 C 1.52991 * 109.47291 * 174.80797 * 7 6 4
9 9 N 1.46504 * 112.85008 * 311.21667 * 8 7 6
10 10 C 1.36934 * 119.99720 * 293.74415 * 9 8 7
11 11 H 1.07997 * 120.00442 * 355.03445 * 10 9 8
12 12 C 1.38817 * 119.99811 * 175.03802 * 10 9 8
13 13 N 1.31622 * 119.99902 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 119.99910 * 179.97438 * 12 10 9
15 15 H 1.48503 * 109.46968 * 90.00284 * 14 12 10
16 16 H 1.48508 * 109.47072 * 210.00242 * 14 12 10
17 17 H 1.48497 * 109.47299 * 330.00373 * 14 12 10
18 18 C 1.53774 * 113.69469 * 82.48481 * 8 7 6
19 19 C 1.53776 * 87.08628 * 139.99241 * 18 8 7
20 20 C 1.53784 * 113.61585 * 180.02562 * 8 7 6
21 21 C 1.50698 * 109.47492 * 240.00480 * 2 1 3
22 22 C 1.38258 * 119.96664 * 119.99443 * 21 2 1
23 23 C 1.38212 * 120.06868 * 180.02562 * 22 21 2
24 24 C 1.38416 * 120.00262 * 0.02562 * 23 22 21
25 25 F 1.35095 * 120.03359 * 180.02562 * 24 23 22
26 26 C 1.38645 * 119.92782 * 359.97438 * 24 23 22
27 27 F 1.35099 * 120.03620 * 180.02562 * 26 24 23
28 28 C 1.38208 * 119.96056 * 299.72745 * 21 2 1
29 29 H 1.08996 * 109.46997 * 59.99845 * 1 2 3
30 30 H 1.08999 * 109.46720 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47308 * 299.99627 * 1 2 3
32 32 H 0.97000 * 119.99910 * 359.97438 * 6 4 2
33 33 H 1.09000 * 109.46745 * 54.80295 * 7 6 4
34 34 H 1.09007 * 109.47080 * 294.80813 * 7 6 4
35 35 H 0.97001 * 120.00063 * 114.01896 * 9 8 7
36 36 H 0.97001 * 119.99941 * 180.02562 * 13 12 10
37 37 H 1.09002 * 113.61649 * 254.54297 * 18 8 7
38 38 H 1.09004 * 113.61330 * 25.44696 * 18 8 7
39 39 H 1.09002 * 113.62132 * 220.02249 * 19 18 8
40 40 H 1.09001 * 113.61391 * 89.11704 * 19 18 8
41 41 H 1.09002 * 113.60885 * 334.48049 * 20 8 7
42 42 H 1.08999 * 113.61851 * 105.38532 * 20 8 7
43 43 H 1.08001 * 119.96650 * 359.97438 * 22 21 2
44 44 H 1.08010 * 119.99778 * 179.97438 * 23 22 21
45 45 H 1.07995 * 120.00339 * 359.97438 * 28 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 8 2.7296 -1.6964 1.1191
6 7 1.7067 -0.2500 2.4545
7 6 2.1947 -0.9409 3.6507
8 6 1.7942 -0.1484 4.8965
9 7 2.1179 1.2767 4.7927
10 6 3.4256 1.6798 4.7427
11 1 4.2187 0.9562 4.8604
12 6 3.7320 3.0186 4.5409
13 7 2.7655 3.9006 4.3980
14 14 5.5159 3.5686 4.4735
15 1 6.0015 3.5028 3.0716
16 1 5.6226 4.9644 4.9693
17 1 6.3417 2.6760 5.3258
18 6 0.3553 -0.4205 5.3659
19 6 0.9011 -0.3852 6.8032
20 6 2.2616 -0.7918 6.2127
21 6 2.0324 -0.7103 -1.2305
22 6 2.8271 -0.0376 -2.1401
23 6 3.2886 -0.6868 -3.2696
24 6 2.9549 -2.0117 -3.4914
25 9 3.4061 -2.6470 -4.5949
26 6 2.1579 -2.6862 -2.5792
27 9 1.8312 -3.9795 -2.7933
28 6 1.7027 -2.0351 -1.4457
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.1493 0.5388 2.5435
33 1 3.2807 -1.0225 3.6055
34 1 1.7571 -1.9382 3.6982
35 1 1.4060 1.9349 4.7633
36 1 2.9796 4.8360 4.2566
37 1 -0.3378 0.3905 5.1420
38 1 -0.0241 -1.3976 5.0669
39 1 0.4642 -1.1418 7.4549
40 1 0.8978 0.6103 7.2471
41 1 2.4034 -1.8705 6.1451
42 1 3.1075 -0.2807 6.6724
43 1 3.0869 0.9966 -1.9682
44 1 3.9091 -0.1600 -3.9796
45 1 1.0857 -2.5609 -0.7321
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001280546392.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:20:40
Heat of formation + Delta-G solvation = -75.239029 kcal
Electronic energy + Delta-G solvation = -29446.639729 eV
Core-core repulsion = 25100.805730 eV
Total energy + Delta-G solvation = -4345.833999 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-49.52073 -48.59728 -40.21919 -39.06230 -38.12785 -34.12082 -33.84595 -33.27274
-30.91565 -30.09479 -29.33073 -27.24629 -25.32632 -24.80127 -23.88030 -23.30063
-22.37120 -21.35954 -19.77063 -18.32491 -17.99383 -17.47505 -17.24663 -17.07882
-16.51079 -16.30251 -15.73142 -15.16047 -15.01542 -14.90226 -14.60990 -14.45870
-14.17640 -14.13208 -13.99920 -13.64895 -13.37430 -13.26403 -12.78088 -12.69483
-12.51810 -12.17929 -12.03819 -11.81328 -11.67663 -11.31911 -11.27973 -11.23128
-11.06009 -10.89208 -10.40783 -10.28494 -10.18323 -9.78414 -9.53103 -9.45134
-9.12475 -8.96007 -8.70932 -8.47966 -7.12743 -5.89914 -3.19766 0.79274
0.92988 2.98517 3.18718 3.36125 3.43042 3.43825 3.68792 3.70794
4.22147 4.34056 4.45999 4.48377 4.83848 4.96139 4.99190 5.09756
5.14328 5.18763 5.22376 5.26713 5.39461 5.45251 5.53678 5.64499
5.66987 5.72912 5.75587 5.80705 5.90030 5.97744 6.02301 6.08561
6.15185 6.28816 6.29041 6.33824 6.45535 6.64090 6.68392 6.81718
6.94710 7.04953 7.64413 8.00685 8.28529 8.63689 9.40448 9.92676
10.28263 11.31867
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.012311 B = 0.003175 C = 0.002753
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2273.782173 B = 8817.651442 C =10168.010399
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.075 4.075
3 H 0.114 0.886
4 C 0.514 3.486
5 O -0.550 6.550
6 N -0.695 5.695
7 C 0.122 3.878
8 C 0.173 3.827
9 N -0.699 5.699
10 C -0.233 4.233
11 H 0.070 0.930
12 C -0.007 4.007
13 N -0.931 5.931
14 Si 0.903 3.097
15 H -0.290 1.290
16 H -0.292 1.292
17 H -0.282 1.282
18 C -0.144 4.144
19 C -0.129 4.129
20 C -0.151 4.151
21 C -0.040 4.040
22 C -0.091 4.091
23 C -0.128 4.128
24 C 0.061 3.939
25 F -0.133 7.133
26 C 0.064 3.936
27 F -0.132 7.132
28 C -0.090 4.090
29 H 0.069 0.931
30 H 0.061 0.939
31 H 0.071 0.929
32 H 0.404 0.596
33 H 0.064 0.936
34 H 0.053 0.947
35 H 0.386 0.614
36 H 0.255 0.745
37 H 0.065 0.935
38 H 0.077 0.923
39 H 0.054 0.946
40 H 0.081 0.919
41 H 0.068 0.932
42 H 0.074 0.926
43 H 0.142 0.858
44 H 0.145 0.855
45 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.893 -7.912 -9.994 14.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.097 4.097
3 H 0.132 0.868
4 C 0.298 3.702
5 O -0.428 6.428
6 N -0.344 5.344
7 C -0.004 4.004
8 C 0.080 3.920
9 N -0.340 5.340
10 C -0.364 4.364
11 H 0.088 0.912
12 C -0.203 4.203
13 N -0.579 5.579
14 Si 0.734 3.266
15 H -0.217 1.217
16 H -0.218 1.218
17 H -0.207 1.207
18 C -0.182 4.182
19 C -0.166 4.166
20 C -0.192 4.192
21 C -0.041 4.041
22 C -0.110 4.110
23 C -0.146 4.146
24 C 0.041 3.959
25 F -0.112 7.112
26 C 0.044 3.956
27 F -0.110 7.110
28 C -0.108 4.108
29 H 0.088 0.912
30 H 0.080 0.920
31 H 0.090 0.910
32 H 0.240 0.760
33 H 0.082 0.918
34 H 0.071 0.929
35 H 0.221 0.779
36 H 0.065 0.935
37 H 0.083 0.917
38 H 0.095 0.905
39 H 0.072 0.928
40 H 0.099 0.901
41 H 0.087 0.913
42 H 0.093 0.907
43 H 0.160 0.840
44 H 0.163 0.837
45 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -6.210 -8.634 -10.099 14.666
hybrid contribution 0.766 0.662 -0.196 1.031
sum -5.444 -7.972 -10.296 14.114
Atomic orbital electron populations
1.21802 0.91736 1.02914 1.03383 1.20341 0.97932 1.00913 0.90494
0.86835 1.20196 0.80645 0.84705 0.84606 1.90691 1.38406 1.26914
1.86821 1.45676 1.52339 1.31540 1.04852 1.21787 0.99651 0.94105
0.84875 1.20837 0.93187 0.86977 0.90987 1.42060 1.05703 0.98747
1.87492 1.19087 0.83874 0.92063 1.41392 0.91235 1.24686 0.97161
0.96058 1.02423 1.69643 1.30248 1.01831 1.56189 0.86259 0.84849
0.77781 0.77722 1.21725 1.21802 1.20745 1.23189 0.96725 1.01075
0.97177 1.22633 0.97051 1.01328 0.95632 1.23311 0.97956 0.99240
0.98666 1.19283 0.96653 0.93052 0.95074 1.21027 0.96218 1.00842
0.92864 1.21000 1.01915 0.92117 0.99613 1.17682 1.00419 0.92202
0.85598 1.91506 1.87428 1.81947 1.50290 1.17614 1.01457 0.79843
0.96677 1.91513 1.91070 1.33651 1.94782 1.20840 1.00461 0.94657
0.94885 0.91191 0.91973 0.91006 0.76045 0.91761 0.92890 0.77897
0.93481 0.91670 0.90468 0.92751 0.90050 0.91339 0.90729 0.84025
0.83711 0.83927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.33 8.91 37.16 0.33 -1.00 16
2 C -0.08 -0.91 2.90 -92.93 -0.27 -1.18 16
3 H 0.11 1.30 7.87 -51.93 -0.41 0.89 16
4 C 0.51 8.18 7.02 -10.99 -0.08 8.11 16
5 O -0.55 -10.56 15.08 5.56 0.08 -10.48 16
6 N -0.69 -11.14 5.27 -60.30 -0.32 -11.46 16
7 C 0.12 2.10 5.03 -4.04 -0.02 2.08 16
8 C 0.17 2.98 0.90 -131.01 -0.12 2.87 16
9 N -0.70 -14.98 4.58 -46.48 -0.21 -15.19 16
10 C -0.23 -5.82 9.25 -15.06 -0.14 -5.96 16
11 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16
12 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16
13 N -0.93 -25.55 13.06 55.49 0.72 -24.82 16
14 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16
15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16
17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
18 C -0.14 -2.06 7.37 -25.92 -0.19 -2.25 16
19 C -0.13 -1.91 7.99 -25.92 -0.21 -2.12 16
20 C -0.15 -2.48 7.28 -25.91 -0.19 -2.67 16
21 C -0.04 -0.49 4.40 -104.63 -0.46 -0.95 16
22 C -0.09 -0.99 9.67 -39.58 -0.38 -1.37 16
23 C -0.13 -1.36 10.02 -39.53 -0.40 -1.75 16
24 C 0.06 0.77 7.31 -39.37 -0.29 0.48 16
25 F -0.13 -1.75 17.18 2.25 0.04 -1.71 16
26 C 0.06 0.86 7.31 -39.36 -0.29 0.57 16
27 F -0.13 -1.86 17.18 2.25 0.04 -1.83 16
28 C -0.09 -1.16 7.90 -39.52 -0.31 -1.47 16
29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
30 H 0.06 0.57 7.40 -51.93 -0.38 0.19 16
31 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16
32 H 0.40 6.25 7.54 -40.82 -0.31 5.94 16
33 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16
34 H 0.05 0.84 7.95 -51.93 -0.41 0.43 16
35 H 0.39 8.82 7.87 -40.82 -0.32 8.50 16
36 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16
37 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16
38 H 0.08 0.98 7.97 -51.93 -0.41 0.56 16
39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
41 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16
42 H 0.07 1.39 7.83 -51.93 -0.41 0.98 16
43 H 0.14 1.24 7.94 -52.49 -0.42 0.82 16
44 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16
45 H 0.14 1.80 7.51 -52.49 -0.39 1.41 16
LS Contribution 382.40 15.07 5.76 5.76
Total: -1.00 -29.31 382.40 -8.37 -37.68
By element:
Atomic # 1 Polarization: 18.93 SS G_CDS: -6.36 Total: 12.57 kcal
Atomic # 6 Polarization: -3.79 SS G_CDS: -3.10 Total: -6.89 kcal
Atomic # 7 Polarization: -51.66 SS G_CDS: 0.19 Total: -51.47 kcal
Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal
Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.54 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -29.31 -8.37 -37.68 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001280546392.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.556 kcal
(2) G-P(sol) polarization free energy of solvation -29.315 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.871 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds