Wall clock time and date at job start Tue Mar 31 2020 21:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47152 * 2 1 4 4 C 1.50693 * 109.47496 * 120.00150 * 2 1 3 5 5 O 1.21278 * 120.00272 * 119.99872 * 4 2 1 6 6 N 1.34780 * 119.99927 * 300.00400 * 4 2 1 7 7 C 1.46503 * 120.00150 * 179.97438 * 6 4 2 8 8 C 1.52991 * 109.47291 * 174.80797 * 7 6 4 9 9 N 1.46504 * 112.85008 * 311.21667 * 8 7 6 10 10 C 1.36934 * 119.99720 * 293.74415 * 9 8 7 11 11 H 1.07997 * 120.00442 * 355.03445 * 10 9 8 12 12 C 1.38817 * 119.99811 * 175.03802 * 10 9 8 13 13 N 1.31622 * 119.99902 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46968 * 90.00284 * 14 12 10 16 16 H 1.48508 * 109.47072 * 210.00242 * 14 12 10 17 17 H 1.48497 * 109.47299 * 330.00373 * 14 12 10 18 18 C 1.53774 * 113.69469 * 82.48481 * 8 7 6 19 19 C 1.53776 * 87.08628 * 139.99241 * 18 8 7 20 20 C 1.53784 * 113.61585 * 180.02562 * 8 7 6 21 21 C 1.50698 * 109.47492 * 240.00480 * 2 1 3 22 22 C 1.38258 * 119.96664 * 119.99443 * 21 2 1 23 23 C 1.38212 * 120.06868 * 180.02562 * 22 21 2 24 24 C 1.38416 * 120.00262 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.03359 * 180.02562 * 24 23 22 26 26 C 1.38645 * 119.92782 * 359.97438 * 24 23 22 27 27 F 1.35099 * 120.03620 * 180.02562 * 26 24 23 28 28 C 1.38208 * 119.96056 * 299.72745 * 21 2 1 29 29 H 1.08996 * 109.46997 * 59.99845 * 1 2 3 30 30 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47308 * 299.99627 * 1 2 3 32 32 H 0.97000 * 119.99910 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46745 * 54.80295 * 7 6 4 34 34 H 1.09007 * 109.47080 * 294.80813 * 7 6 4 35 35 H 0.97001 * 120.00063 * 114.01896 * 9 8 7 36 36 H 0.97001 * 119.99941 * 180.02562 * 13 12 10 37 37 H 1.09002 * 113.61649 * 254.54297 * 18 8 7 38 38 H 1.09004 * 113.61330 * 25.44696 * 18 8 7 39 39 H 1.09002 * 113.62132 * 220.02249 * 19 18 8 40 40 H 1.09001 * 113.61391 * 89.11704 * 19 18 8 41 41 H 1.09002 * 113.60885 * 334.48049 * 20 8 7 42 42 H 1.08999 * 113.61851 * 105.38532 * 20 8 7 43 43 H 1.08001 * 119.96650 * 359.97438 * 22 21 2 44 44 H 1.08010 * 119.99778 * 179.97438 * 23 22 21 45 45 H 1.07995 * 120.00339 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 6 1.7942 -0.1484 4.8965 9 7 2.1179 1.2767 4.7927 10 6 3.4256 1.6798 4.7427 11 1 4.2187 0.9562 4.8604 12 6 3.7320 3.0186 4.5409 13 7 2.7655 3.9006 4.3980 14 14 5.5159 3.5686 4.4735 15 1 6.0015 3.5028 3.0716 16 1 5.6226 4.9644 4.9693 17 1 6.3417 2.6760 5.3258 18 6 0.3553 -0.4205 5.3659 19 6 0.9011 -0.3852 6.8032 20 6 2.2616 -0.7918 6.2127 21 6 2.0324 -0.7103 -1.2305 22 6 2.8271 -0.0376 -2.1401 23 6 3.2886 -0.6868 -3.2696 24 6 2.9549 -2.0117 -3.4914 25 9 3.4061 -2.6470 -4.5949 26 6 2.1579 -2.6862 -2.5792 27 9 1.8312 -3.9795 -2.7933 28 6 1.7027 -2.0351 -1.4457 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.1493 0.5388 2.5435 33 1 3.2807 -1.0225 3.6055 34 1 1.7571 -1.9382 3.6982 35 1 1.4060 1.9349 4.7633 36 1 2.9796 4.8360 4.2566 37 1 -0.3378 0.3905 5.1420 38 1 -0.0241 -1.3976 5.0669 39 1 0.4642 -1.1418 7.4549 40 1 0.8978 0.6103 7.2471 41 1 2.4034 -1.8705 6.1451 42 1 3.1075 -0.2807 6.6724 43 1 3.0869 0.9966 -1.9682 44 1 3.9091 -0.1600 -3.9796 45 1 1.0857 -2.5609 -0.7321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280546392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:40 Heat of formation + Delta-G solvation = -75.239029 kcal Electronic energy + Delta-G solvation = -29446.639729 eV Core-core repulsion = 25100.805730 eV Total energy + Delta-G solvation = -4345.833999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.52073 -48.59728 -40.21919 -39.06230 -38.12785 -34.12082 -33.84595 -33.27274 -30.91565 -30.09479 -29.33073 -27.24629 -25.32632 -24.80127 -23.88030 -23.30063 -22.37120 -21.35954 -19.77063 -18.32491 -17.99383 -17.47505 -17.24663 -17.07882 -16.51079 -16.30251 -15.73142 -15.16047 -15.01542 -14.90226 -14.60990 -14.45870 -14.17640 -14.13208 -13.99920 -13.64895 -13.37430 -13.26403 -12.78088 -12.69483 -12.51810 -12.17929 -12.03819 -11.81328 -11.67663 -11.31911 -11.27973 -11.23128 -11.06009 -10.89208 -10.40783 -10.28494 -10.18323 -9.78414 -9.53103 -9.45134 -9.12475 -8.96007 -8.70932 -8.47966 -7.12743 -5.89914 -3.19766 0.79274 0.92988 2.98517 3.18718 3.36125 3.43042 3.43825 3.68792 3.70794 4.22147 4.34056 4.45999 4.48377 4.83848 4.96139 4.99190 5.09756 5.14328 5.18763 5.22376 5.26713 5.39461 5.45251 5.53678 5.64499 5.66987 5.72912 5.75587 5.80705 5.90030 5.97744 6.02301 6.08561 6.15185 6.28816 6.29041 6.33824 6.45535 6.64090 6.68392 6.81718 6.94710 7.04953 7.64413 8.00685 8.28529 8.63689 9.40448 9.92676 10.28263 11.31867 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.003175 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.782173 B = 8817.651442 C =10168.010399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 H 0.114 0.886 4 C 0.514 3.486 5 O -0.550 6.550 6 N -0.695 5.695 7 C 0.122 3.878 8 C 0.173 3.827 9 N -0.699 5.699 10 C -0.233 4.233 11 H 0.070 0.930 12 C -0.007 4.007 13 N -0.931 5.931 14 Si 0.903 3.097 15 H -0.290 1.290 16 H -0.292 1.292 17 H -0.282 1.282 18 C -0.144 4.144 19 C -0.129 4.129 20 C -0.151 4.151 21 C -0.040 4.040 22 C -0.091 4.091 23 C -0.128 4.128 24 C 0.061 3.939 25 F -0.133 7.133 26 C 0.064 3.936 27 F -0.132 7.132 28 C -0.090 4.090 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.404 0.596 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 -7.912 -9.994 14.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.097 4.097 3 H 0.132 0.868 4 C 0.298 3.702 5 O -0.428 6.428 6 N -0.344 5.344 7 C -0.004 4.004 8 C 0.080 3.920 9 N -0.340 5.340 10 C -0.364 4.364 11 H 0.088 0.912 12 C -0.203 4.203 13 N -0.579 5.579 14 Si 0.734 3.266 15 H -0.217 1.217 16 H -0.218 1.218 17 H -0.207 1.207 18 C -0.182 4.182 19 C -0.166 4.166 20 C -0.192 4.192 21 C -0.041 4.041 22 C -0.110 4.110 23 C -0.146 4.146 24 C 0.041 3.959 25 F -0.112 7.112 26 C 0.044 3.956 27 F -0.110 7.110 28 C -0.108 4.108 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.240 0.760 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.221 0.779 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.210 -8.634 -10.099 14.666 hybrid contribution 0.766 0.662 -0.196 1.031 sum -5.444 -7.972 -10.296 14.114 Atomic orbital electron populations 1.21802 0.91736 1.02914 1.03383 1.20341 0.97932 1.00913 0.90494 0.86835 1.20196 0.80645 0.84705 0.84606 1.90691 1.38406 1.26914 1.86821 1.45676 1.52339 1.31540 1.04852 1.21787 0.99651 0.94105 0.84875 1.20837 0.93187 0.86977 0.90987 1.42060 1.05703 0.98747 1.87492 1.19087 0.83874 0.92063 1.41392 0.91235 1.24686 0.97161 0.96058 1.02423 1.69643 1.30248 1.01831 1.56189 0.86259 0.84849 0.77781 0.77722 1.21725 1.21802 1.20745 1.23189 0.96725 1.01075 0.97177 1.22633 0.97051 1.01328 0.95632 1.23311 0.97956 0.99240 0.98666 1.19283 0.96653 0.93052 0.95074 1.21027 0.96218 1.00842 0.92864 1.21000 1.01915 0.92117 0.99613 1.17682 1.00419 0.92202 0.85598 1.91506 1.87428 1.81947 1.50290 1.17614 1.01457 0.79843 0.96677 1.91513 1.91070 1.33651 1.94782 1.20840 1.00461 0.94657 0.94885 0.91191 0.91973 0.91006 0.76045 0.91761 0.92890 0.77897 0.93481 0.91670 0.90468 0.92751 0.90050 0.91339 0.90729 0.84025 0.83711 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.91 37.16 0.33 -1.00 16 2 C -0.08 -0.91 2.90 -92.93 -0.27 -1.18 16 3 H 0.11 1.30 7.87 -51.93 -0.41 0.89 16 4 C 0.51 8.18 7.02 -10.99 -0.08 8.11 16 5 O -0.55 -10.56 15.08 5.56 0.08 -10.48 16 6 N -0.69 -11.14 5.27 -60.30 -0.32 -11.46 16 7 C 0.12 2.10 5.03 -4.04 -0.02 2.08 16 8 C 0.17 2.98 0.90 -131.01 -0.12 2.87 16 9 N -0.70 -14.98 4.58 -46.48 -0.21 -15.19 16 10 C -0.23 -5.82 9.25 -15.06 -0.14 -5.96 16 11 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 12 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 13 N -0.93 -25.55 13.06 55.49 0.72 -24.82 16 14 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.14 -2.06 7.37 -25.92 -0.19 -2.25 16 19 C -0.13 -1.91 7.99 -25.92 -0.21 -2.12 16 20 C -0.15 -2.48 7.28 -25.91 -0.19 -2.67 16 21 C -0.04 -0.49 4.40 -104.63 -0.46 -0.95 16 22 C -0.09 -0.99 9.67 -39.58 -0.38 -1.37 16 23 C -0.13 -1.36 10.02 -39.53 -0.40 -1.75 16 24 C 0.06 0.77 7.31 -39.37 -0.29 0.48 16 25 F -0.13 -1.75 17.18 2.25 0.04 -1.71 16 26 C 0.06 0.86 7.31 -39.36 -0.29 0.57 16 27 F -0.13 -1.86 17.18 2.25 0.04 -1.83 16 28 C -0.09 -1.16 7.90 -39.52 -0.31 -1.47 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.57 7.40 -51.93 -0.38 0.19 16 31 H 0.07 0.65 7.56 -51.93 -0.39 0.26 16 32 H 0.40 6.25 7.54 -40.82 -0.31 5.94 16 33 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.05 0.84 7.95 -51.93 -0.41 0.43 16 35 H 0.39 8.82 7.87 -40.82 -0.32 8.50 16 36 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 37 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.08 0.98 7.97 -51.93 -0.41 0.56 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 42 H 0.07 1.39 7.83 -51.93 -0.41 0.98 16 43 H 0.14 1.24 7.94 -52.49 -0.42 0.82 16 44 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.14 1.80 7.51 -52.49 -0.39 1.41 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -29.31 382.40 -8.37 -37.68 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -6.36 Total: 12.57 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -3.10 Total: -6.89 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.19 Total: -51.47 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.08 Total: -3.54 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.31 -8.37 -37.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280546392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.556 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds