Wall clock time and date at job start Tue Mar 31 2020 21:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47152 * 2 1 4 4 C 1.50693 * 109.47496 * 120.00150 * 2 1 3 5 5 O 1.21278 * 120.00272 * 119.99872 * 4 2 1 6 6 N 1.34780 * 119.99927 * 300.00400 * 4 2 1 7 7 C 1.46503 * 120.00150 * 179.97438 * 6 4 2 8 8 C 1.52991 * 109.47291 * 174.80797 * 7 6 4 9 9 N 1.46504 * 112.85008 * 311.21667 * 8 7 6 10 10 C 1.36934 * 119.99720 * 293.74415 * 9 8 7 11 11 H 1.07997 * 120.00442 * 355.03445 * 10 9 8 12 12 C 1.38817 * 119.99811 * 175.03802 * 10 9 8 13 13 N 1.31622 * 119.99902 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99910 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46968 * 90.00284 * 14 12 10 16 16 H 1.48508 * 109.47072 * 210.00242 * 14 12 10 17 17 H 1.48497 * 109.47299 * 330.00373 * 14 12 10 18 18 C 1.53774 * 113.69469 * 82.48481 * 8 7 6 19 19 C 1.53776 * 87.08628 * 139.99241 * 18 8 7 20 20 C 1.53784 * 113.61585 * 180.02562 * 8 7 6 21 21 C 1.50698 * 109.47492 * 240.00480 * 2 1 3 22 22 C 1.38258 * 119.96664 * 119.99443 * 21 2 1 23 23 C 1.38212 * 120.06868 * 180.02562 * 22 21 2 24 24 C 1.38416 * 120.00262 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.03359 * 180.02562 * 24 23 22 26 26 C 1.38645 * 119.92782 * 359.97438 * 24 23 22 27 27 F 1.35099 * 120.03620 * 180.02562 * 26 24 23 28 28 C 1.38208 * 119.96056 * 299.72745 * 21 2 1 29 29 H 1.08996 * 109.46997 * 59.99845 * 1 2 3 30 30 H 1.08999 * 109.46720 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47308 * 299.99627 * 1 2 3 32 32 H 0.97000 * 119.99910 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46745 * 54.80295 * 7 6 4 34 34 H 1.09007 * 109.47080 * 294.80813 * 7 6 4 35 35 H 0.97001 * 120.00063 * 114.01896 * 9 8 7 36 36 H 0.97001 * 119.99941 * 180.02562 * 13 12 10 37 37 H 1.09002 * 113.61649 * 254.54297 * 18 8 7 38 38 H 1.09004 * 113.61330 * 25.44696 * 18 8 7 39 39 H 1.09002 * 113.62132 * 220.02249 * 19 18 8 40 40 H 1.09001 * 113.61391 * 89.11704 * 19 18 8 41 41 H 1.09002 * 113.60885 * 334.48049 * 20 8 7 42 42 H 1.08999 * 113.61851 * 105.38532 * 20 8 7 43 43 H 1.08001 * 119.96650 * 359.97438 * 22 21 2 44 44 H 1.08010 * 119.99778 * 179.97438 * 23 22 21 45 45 H 1.07995 * 120.00339 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6964 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1947 -0.9409 3.6507 8 6 1.7942 -0.1484 4.8965 9 7 2.1179 1.2767 4.7927 10 6 3.4256 1.6798 4.7427 11 1 4.2187 0.9562 4.8604 12 6 3.7320 3.0186 4.5409 13 7 2.7655 3.9006 4.3980 14 14 5.5159 3.5686 4.4735 15 1 6.0015 3.5028 3.0716 16 1 5.6226 4.9644 4.9693 17 1 6.3417 2.6760 5.3258 18 6 0.3553 -0.4205 5.3659 19 6 0.9011 -0.3852 6.8032 20 6 2.2616 -0.7918 6.2127 21 6 2.0324 -0.7103 -1.2305 22 6 2.8271 -0.0376 -2.1401 23 6 3.2886 -0.6868 -3.2696 24 6 2.9549 -2.0117 -3.4914 25 9 3.4061 -2.6470 -4.5949 26 6 2.1579 -2.6862 -2.5792 27 9 1.8312 -3.9795 -2.7933 28 6 1.7027 -2.0351 -1.4457 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.1493 0.5388 2.5435 33 1 3.2807 -1.0225 3.6055 34 1 1.7571 -1.9382 3.6982 35 1 1.4060 1.9349 4.7633 36 1 2.9796 4.8360 4.2566 37 1 -0.3378 0.3905 5.1420 38 1 -0.0241 -1.3976 5.0669 39 1 0.4642 -1.1418 7.4549 40 1 0.8978 0.6103 7.2471 41 1 2.4034 -1.8705 6.1451 42 1 3.1075 -0.2807 6.6724 43 1 3.0869 0.9966 -1.9682 44 1 3.9091 -0.1600 -3.9796 45 1 1.0857 -2.5609 -0.7321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280546392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:39 Heat of formation + Delta-G solvation = -91.399859 kcal Electronic energy + Delta-G solvation = -29447.340515 eV Core-core repulsion = 25100.805730 eV Total energy + Delta-G solvation = -4346.534786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.53617 -49.62060 -41.36705 -40.30840 -39.30606 -35.39238 -35.14884 -34.86102 -31.88663 -31.80119 -30.31753 -28.56957 -26.67982 -25.89827 -25.48470 -24.26033 -23.52190 -22.56222 -20.99068 -19.68721 -19.09697 -18.98284 -18.52823 -18.17493 -17.58623 -17.34290 -17.05641 -16.55153 -16.20076 -16.05200 -15.93425 -15.61163 -15.54680 -15.19872 -15.13617 -15.01248 -14.71916 -14.45319 -14.12189 -13.76825 -13.56847 -13.33414 -13.03187 -12.99214 -12.96004 -12.90066 -12.65288 -12.48641 -12.23478 -12.15432 -12.12518 -11.90999 -11.59956 -11.45750 -10.93697 -10.84208 -10.61038 -10.05255 -9.84845 -9.68142 -8.95730 -7.90731 -5.16899 -0.16311 0.01759 1.45970 1.49199 1.54404 1.74200 2.18248 2.53484 2.60250 2.75286 3.24940 3.40184 3.41533 3.57926 3.78280 3.81387 3.88884 3.99519 4.01782 4.08111 4.11916 4.22269 4.26245 4.36636 4.63885 4.70616 4.79320 4.83831 4.86901 4.89077 4.93313 4.93880 4.96613 5.02192 5.02749 5.15930 5.25171 5.34240 5.38786 5.44533 5.55083 5.70169 5.71712 5.74475 6.33344 6.72933 7.36977 7.40715 8.12592 8.37985 9.31101 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.003175 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.782173 B = 8817.651442 C =10168.010399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 H 0.124 0.876 4 C 0.509 3.491 5 O -0.586 6.586 6 N -0.693 5.693 7 C 0.129 3.871 8 C 0.160 3.840 9 N -0.702 5.702 10 C -0.218 4.218 11 H 0.060 0.940 12 C -0.057 4.057 13 N -0.956 5.956 14 Si 0.949 3.051 15 H -0.292 1.292 16 H -0.297 1.297 17 H -0.281 1.281 18 C -0.126 4.126 19 C -0.122 4.122 20 C -0.153 4.153 21 C -0.049 4.049 22 C -0.088 4.088 23 C -0.118 4.118 24 C 0.049 3.951 25 F -0.139 7.139 26 C 0.044 3.956 27 F -0.142 7.142 28 C -0.096 4.096 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.408 0.592 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.379 0.621 36 H 0.250 0.750 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.167 0.833 44 H 0.175 0.825 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 -7.922 -10.387 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.089 4.089 3 H 0.142 0.858 4 C 0.296 3.704 5 O -0.467 6.467 6 N -0.343 5.343 7 C 0.003 3.997 8 C 0.069 3.931 9 N -0.342 5.342 10 C -0.350 4.350 11 H 0.078 0.922 12 C -0.250 4.250 13 N -0.607 5.607 14 Si 0.780 3.220 15 H -0.220 1.220 16 H -0.223 1.223 17 H -0.207 1.207 18 C -0.164 4.164 19 C -0.159 4.159 20 C -0.193 4.193 21 C -0.050 4.050 22 C -0.106 4.106 23 C -0.136 4.136 24 C 0.029 3.971 25 F -0.118 7.118 26 C 0.024 3.976 27 F -0.121 7.121 28 C -0.115 4.115 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.244 0.756 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.213 0.787 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.185 0.815 44 H 0.192 0.808 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.087 -8.675 -10.483 15.342 hybrid contribution 1.057 0.577 -0.041 1.205 sum -6.030 -8.098 -10.523 14.583 Atomic orbital electron populations 1.21818 0.89586 1.03370 1.04640 1.20347 0.99656 1.00574 0.88298 0.85781 1.20889 0.79787 0.84275 0.85464 1.90674 1.40033 1.28649 1.87373 1.45685 1.52227 1.31550 1.04791 1.21642 0.97670 0.95107 0.85300 1.21101 0.95999 0.84727 0.91301 1.42057 1.04163 1.00595 1.87365 1.19187 0.85234 0.91661 1.38935 0.92231 1.25169 0.99501 0.96481 1.03894 1.69737 1.31174 1.01568 1.58209 0.85514 0.82171 0.76975 0.77318 1.21952 1.22338 1.20663 1.23140 0.94542 1.02591 0.96078 1.22561 0.95921 1.01051 0.96412 1.23343 0.97861 1.00241 0.97849 1.19423 0.97137 0.92894 0.95502 1.21358 0.95028 1.01925 0.92260 1.21325 1.01244 0.91171 0.99866 1.17922 1.00713 0.93035 0.85435 1.91488 1.87515 1.82227 1.50533 1.17833 1.02545 0.79696 0.97496 1.91476 1.91308 1.34397 1.94911 1.20855 1.00792 0.95154 0.94726 0.89170 0.91960 0.90497 0.75572 0.95192 0.91193 0.78695 0.94138 0.91341 0.87734 0.89864 0.92077 0.89069 0.93679 0.81507 0.80806 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.91 71.98 0.64 -1.64 16 2 C -0.07 -1.52 2.90 -12.29 -0.04 -1.55 16 3 H 0.12 2.55 7.87 -2.39 -0.02 2.53 16 4 C 0.51 15.80 7.02 87.65 0.62 16.42 16 5 O -0.59 -22.47 15.08 -3.02 -0.05 -22.52 16 6 N -0.69 -21.56 5.27 -463.07 -2.44 -24.00 16 7 C 0.13 4.34 5.03 86.38 0.43 4.78 16 8 C 0.16 5.34 0.90 4.13 0.00 5.34 16 9 N -0.70 -29.88 4.58 -300.98 -1.38 -31.26 16 10 C -0.22 -10.93 9.25 84.04 0.78 -10.15 16 11 H 0.06 3.07 7.83 -2.91 -0.02 3.05 16 12 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 13 N -0.96 -52.67 13.06 21.65 0.28 -52.39 16 14 Si 0.95 44.18 29.55 68.60 2.03 46.21 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 C -0.13 -3.26 7.37 31.12 0.23 -3.03 16 19 C -0.12 -3.33 7.99 31.12 0.25 -3.08 16 20 C -0.15 -4.82 7.28 31.12 0.23 -4.59 16 21 C -0.05 -1.12 4.40 -19.87 -0.09 -1.21 16 22 C -0.09 -1.69 9.67 22.27 0.22 -1.47 16 23 C -0.12 -2.24 10.02 22.31 0.22 -2.01 16 24 C 0.05 1.19 7.31 22.41 0.16 1.36 16 25 F -0.14 -3.57 17.18 44.97 0.77 -2.79 16 26 C 0.04 1.19 7.31 22.41 0.16 1.35 16 27 F -0.14 -4.11 17.18 44.97 0.77 -3.34 16 28 C -0.10 -2.46 7.90 22.31 0.18 -2.28 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.04 7.40 -2.39 -0.02 1.03 16 31 H 0.08 1.21 7.56 -2.39 -0.02 1.20 16 32 H 0.41 12.10 7.54 -92.71 -0.70 11.41 16 33 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16 34 H 0.07 2.11 7.95 -2.38 -0.02 2.09 16 35 H 0.38 17.22 7.87 -92.71 -0.73 16.49 16 36 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 37 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 38 H 0.10 2.20 7.97 -2.38 -0.02 2.18 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.09 2.45 8.10 -2.39 -0.02 2.43 16 42 H 0.04 1.67 7.83 -2.39 -0.02 1.66 16 43 H 0.17 2.34 7.94 -2.91 -0.02 2.31 16 44 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.14 3.53 7.51 -2.91 -0.02 3.51 16 Total: -1.00 -64.02 382.40 4.05 -59.97 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.40 Total: 34.45 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 4.46 Total: -4.33 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -3.54 Total: -107.65 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 1.55 Total: -6.13 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.02 4.05 -59.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280546392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.429 kcal (2) G-P(sol) polarization free energy of solvation -64.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds