Wall clock time and date at job start Tue Mar 31 2020 21:20:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09001 * 109.47152 * 2 1
4 4 C 1.50693 * 109.47496 * 120.00150 * 2 1 3
5 5 O 1.21278 * 120.00272 * 119.99872 * 4 2 1
6 6 N 1.34780 * 119.99927 * 300.00400 * 4 2 1
7 7 C 1.46503 * 120.00150 * 179.97438 * 6 4 2
8 8 C 1.52991 * 109.47291 * 174.80797 * 7 6 4
9 9 N 1.46504 * 112.85008 * 311.21667 * 8 7 6
10 10 C 1.36934 * 119.99720 * 293.74415 * 9 8 7
11 11 H 1.07997 * 120.00442 * 355.03445 * 10 9 8
12 12 C 1.38817 * 119.99811 * 175.03802 * 10 9 8
13 13 N 1.31622 * 119.99902 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 119.99910 * 179.97438 * 12 10 9
15 15 H 1.48503 * 109.46968 * 90.00284 * 14 12 10
16 16 H 1.48508 * 109.47072 * 210.00242 * 14 12 10
17 17 H 1.48497 * 109.47299 * 330.00373 * 14 12 10
18 18 C 1.53774 * 113.69469 * 82.48481 * 8 7 6
19 19 C 1.53776 * 87.08628 * 139.99241 * 18 8 7
20 20 C 1.53784 * 113.61585 * 180.02562 * 8 7 6
21 21 C 1.50698 * 109.47492 * 240.00480 * 2 1 3
22 22 C 1.38258 * 119.96664 * 119.99443 * 21 2 1
23 23 C 1.38212 * 120.06868 * 180.02562 * 22 21 2
24 24 C 1.38416 * 120.00262 * 0.02562 * 23 22 21
25 25 F 1.35095 * 120.03359 * 180.02562 * 24 23 22
26 26 C 1.38645 * 119.92782 * 359.97438 * 24 23 22
27 27 F 1.35099 * 120.03620 * 180.02562 * 26 24 23
28 28 C 1.38208 * 119.96056 * 299.72745 * 21 2 1
29 29 H 1.08996 * 109.46997 * 59.99845 * 1 2 3
30 30 H 1.08999 * 109.46720 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47308 * 299.99627 * 1 2 3
32 32 H 0.97000 * 119.99910 * 359.97438 * 6 4 2
33 33 H 1.09000 * 109.46745 * 54.80295 * 7 6 4
34 34 H 1.09007 * 109.47080 * 294.80813 * 7 6 4
35 35 H 0.97001 * 120.00063 * 114.01896 * 9 8 7
36 36 H 0.97001 * 119.99941 * 180.02562 * 13 12 10
37 37 H 1.09002 * 113.61649 * 254.54297 * 18 8 7
38 38 H 1.09004 * 113.61330 * 25.44696 * 18 8 7
39 39 H 1.09002 * 113.62132 * 220.02249 * 19 18 8
40 40 H 1.09001 * 113.61391 * 89.11704 * 19 18 8
41 41 H 1.09002 * 113.60885 * 334.48049 * 20 8 7
42 42 H 1.08999 * 113.61851 * 105.38532 * 20 8 7
43 43 H 1.08001 * 119.96650 * 359.97438 * 22 21 2
44 44 H 1.08010 * 119.99778 * 179.97438 * 23 22 21
45 45 H 1.07995 * 120.00339 * 359.97438 * 28 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 8 2.7296 -1.6964 1.1191
6 7 1.7067 -0.2500 2.4545
7 6 2.1947 -0.9409 3.6507
8 6 1.7942 -0.1484 4.8965
9 7 2.1179 1.2767 4.7927
10 6 3.4256 1.6798 4.7427
11 1 4.2187 0.9562 4.8604
12 6 3.7320 3.0186 4.5409
13 7 2.7655 3.9006 4.3980
14 14 5.5159 3.5686 4.4735
15 1 6.0015 3.5028 3.0716
16 1 5.6226 4.9644 4.9693
17 1 6.3417 2.6760 5.3258
18 6 0.3553 -0.4205 5.3659
19 6 0.9011 -0.3852 6.8032
20 6 2.2616 -0.7918 6.2127
21 6 2.0324 -0.7103 -1.2305
22 6 2.8271 -0.0376 -2.1401
23 6 3.2886 -0.6868 -3.2696
24 6 2.9549 -2.0117 -3.4914
25 9 3.4061 -2.6470 -4.5949
26 6 2.1579 -2.6862 -2.5792
27 9 1.8312 -3.9795 -2.7933
28 6 1.7027 -2.0351 -1.4457
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.1493 0.5388 2.5435
33 1 3.2807 -1.0225 3.6055
34 1 1.7571 -1.9382 3.6982
35 1 1.4060 1.9349 4.7633
36 1 2.9796 4.8360 4.2566
37 1 -0.3378 0.3905 5.1420
38 1 -0.0241 -1.3976 5.0669
39 1 0.4642 -1.1418 7.4549
40 1 0.8978 0.6103 7.2471
41 1 2.4034 -1.8705 6.1451
42 1 3.1075 -0.2807 6.6724
43 1 3.0869 0.9966 -1.9682
44 1 3.9091 -0.1600 -3.9796
45 1 1.0857 -2.5609 -0.7321
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001280546392.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:20:39
Heat of formation + Delta-G solvation = -91.399859 kcal
Electronic energy + Delta-G solvation = -29447.340515 eV
Core-core repulsion = 25100.805730 eV
Total energy + Delta-G solvation = -4346.534786 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-50.53617 -49.62060 -41.36705 -40.30840 -39.30606 -35.39238 -35.14884 -34.86102
-31.88663 -31.80119 -30.31753 -28.56957 -26.67982 -25.89827 -25.48470 -24.26033
-23.52190 -22.56222 -20.99068 -19.68721 -19.09697 -18.98284 -18.52823 -18.17493
-17.58623 -17.34290 -17.05641 -16.55153 -16.20076 -16.05200 -15.93425 -15.61163
-15.54680 -15.19872 -15.13617 -15.01248 -14.71916 -14.45319 -14.12189 -13.76825
-13.56847 -13.33414 -13.03187 -12.99214 -12.96004 -12.90066 -12.65288 -12.48641
-12.23478 -12.15432 -12.12518 -11.90999 -11.59956 -11.45750 -10.93697 -10.84208
-10.61038 -10.05255 -9.84845 -9.68142 -8.95730 -7.90731 -5.16899 -0.16311
0.01759 1.45970 1.49199 1.54404 1.74200 2.18248 2.53484 2.60250
2.75286 3.24940 3.40184 3.41533 3.57926 3.78280 3.81387 3.88884
3.99519 4.01782 4.08111 4.11916 4.22269 4.26245 4.36636 4.63885
4.70616 4.79320 4.83831 4.86901 4.89077 4.93313 4.93880 4.96613
5.02192 5.02749 5.15930 5.25171 5.34240 5.38786 5.44533 5.55083
5.70169 5.71712 5.74475 6.33344 6.72933 7.36977 7.40715 8.12592
8.37985 9.31101
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.012311 B = 0.003175 C = 0.002753
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2273.782173 B = 8817.651442 C =10168.010399
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.068 4.068
3 H 0.124 0.876
4 C 0.509 3.491
5 O -0.586 6.586
6 N -0.693 5.693
7 C 0.129 3.871
8 C 0.160 3.840
9 N -0.702 5.702
10 C -0.218 4.218
11 H 0.060 0.940
12 C -0.057 4.057
13 N -0.956 5.956
14 Si 0.949 3.051
15 H -0.292 1.292
16 H -0.297 1.297
17 H -0.281 1.281
18 C -0.126 4.126
19 C -0.122 4.122
20 C -0.153 4.153
21 C -0.049 4.049
22 C -0.088 4.088
23 C -0.118 4.118
24 C 0.049 3.951
25 F -0.139 7.139
26 C 0.044 3.956
27 F -0.142 7.142
28 C -0.096 4.096
29 H 0.089 0.911
30 H 0.061 0.939
31 H 0.076 0.924
32 H 0.408 0.592
33 H 0.030 0.970
34 H 0.070 0.930
35 H 0.379 0.621
36 H 0.250 0.750
37 H 0.068 0.932
38 H 0.104 0.896
39 H 0.083 0.917
40 H 0.060 0.940
41 H 0.091 0.909
42 H 0.044 0.956
43 H 0.167 0.833
44 H 0.175 0.825
45 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.759 -7.922 -10.387 15.194
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.089 4.089
3 H 0.142 0.858
4 C 0.296 3.704
5 O -0.467 6.467
6 N -0.343 5.343
7 C 0.003 3.997
8 C 0.069 3.931
9 N -0.342 5.342
10 C -0.350 4.350
11 H 0.078 0.922
12 C -0.250 4.250
13 N -0.607 5.607
14 Si 0.780 3.220
15 H -0.220 1.220
16 H -0.223 1.223
17 H -0.207 1.207
18 C -0.164 4.164
19 C -0.159 4.159
20 C -0.193 4.193
21 C -0.050 4.050
22 C -0.106 4.106
23 C -0.136 4.136
24 C 0.029 3.971
25 F -0.118 7.118
26 C 0.024 3.976
27 F -0.121 7.121
28 C -0.115 4.115
29 H 0.108 0.892
30 H 0.080 0.920
31 H 0.095 0.905
32 H 0.244 0.756
33 H 0.048 0.952
34 H 0.088 0.912
35 H 0.213 0.787
36 H 0.059 0.941
37 H 0.087 0.913
38 H 0.123 0.877
39 H 0.101 0.899
40 H 0.079 0.921
41 H 0.109 0.891
42 H 0.063 0.937
43 H 0.185 0.815
44 H 0.192 0.808
45 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -7.087 -8.675 -10.483 15.342
hybrid contribution 1.057 0.577 -0.041 1.205
sum -6.030 -8.098 -10.523 14.583
Atomic orbital electron populations
1.21818 0.89586 1.03370 1.04640 1.20347 0.99656 1.00574 0.88298
0.85781 1.20889 0.79787 0.84275 0.85464 1.90674 1.40033 1.28649
1.87373 1.45685 1.52227 1.31550 1.04791 1.21642 0.97670 0.95107
0.85300 1.21101 0.95999 0.84727 0.91301 1.42057 1.04163 1.00595
1.87365 1.19187 0.85234 0.91661 1.38935 0.92231 1.25169 0.99501
0.96481 1.03894 1.69737 1.31174 1.01568 1.58209 0.85514 0.82171
0.76975 0.77318 1.21952 1.22338 1.20663 1.23140 0.94542 1.02591
0.96078 1.22561 0.95921 1.01051 0.96412 1.23343 0.97861 1.00241
0.97849 1.19423 0.97137 0.92894 0.95502 1.21358 0.95028 1.01925
0.92260 1.21325 1.01244 0.91171 0.99866 1.17922 1.00713 0.93035
0.85435 1.91488 1.87515 1.82227 1.50533 1.17833 1.02545 0.79696
0.97496 1.91476 1.91308 1.34397 1.94911 1.20855 1.00792 0.95154
0.94726 0.89170 0.91960 0.90497 0.75572 0.95192 0.91193 0.78695
0.94138 0.91341 0.87734 0.89864 0.92077 0.89069 0.93679 0.81507
0.80806 0.84319
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.28 8.91 71.98 0.64 -1.64 16
2 C -0.07 -1.52 2.90 -12.29 -0.04 -1.55 16
3 H 0.12 2.55 7.87 -2.39 -0.02 2.53 16
4 C 0.51 15.80 7.02 87.65 0.62 16.42 16
5 O -0.59 -22.47 15.08 -3.02 -0.05 -22.52 16
6 N -0.69 -21.56 5.27 -463.07 -2.44 -24.00 16
7 C 0.13 4.34 5.03 86.38 0.43 4.78 16
8 C 0.16 5.34 0.90 4.13 0.00 5.34 16
9 N -0.70 -29.88 4.58 -300.98 -1.38 -31.26 16
10 C -0.22 -10.93 9.25 84.04 0.78 -10.15 16
11 H 0.06 3.07 7.83 -2.91 -0.02 3.05 16
12 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16
13 N -0.96 -52.67 13.06 21.65 0.28 -52.39 16
14 Si 0.95 44.18 29.55 68.60 2.03 46.21 16
15 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16
16 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16
17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16
18 C -0.13 -3.26 7.37 31.12 0.23 -3.03 16
19 C -0.12 -3.33 7.99 31.12 0.25 -3.08 16
20 C -0.15 -4.82 7.28 31.12 0.23 -4.59 16
21 C -0.05 -1.12 4.40 -19.87 -0.09 -1.21 16
22 C -0.09 -1.69 9.67 22.27 0.22 -1.47 16
23 C -0.12 -2.24 10.02 22.31 0.22 -2.01 16
24 C 0.05 1.19 7.31 22.41 0.16 1.36 16
25 F -0.14 -3.57 17.18 44.97 0.77 -2.79 16
26 C 0.04 1.19 7.31 22.41 0.16 1.35 16
27 F -0.14 -4.11 17.18 44.97 0.77 -3.34 16
28 C -0.10 -2.46 7.90 22.31 0.18 -2.28 16
29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
30 H 0.06 1.04 7.40 -2.39 -0.02 1.03 16
31 H 0.08 1.21 7.56 -2.39 -0.02 1.20 16
32 H 0.41 12.10 7.54 -92.71 -0.70 11.41 16
33 H 0.03 1.20 8.13 -2.39 -0.02 1.18 16
34 H 0.07 2.11 7.95 -2.38 -0.02 2.09 16
35 H 0.38 17.22 7.87 -92.71 -0.73 16.49 16
36 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16
37 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16
38 H 0.10 2.20 7.97 -2.38 -0.02 2.18 16
39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
41 H 0.09 2.45 8.10 -2.39 -0.02 2.43 16
42 H 0.04 1.67 7.83 -2.39 -0.02 1.66 16
43 H 0.17 2.34 7.94 -2.91 -0.02 2.31 16
44 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16
45 H 0.14 3.53 7.51 -2.91 -0.02 3.51 16
Total: -1.00 -64.02 382.40 4.05 -59.97
By element:
Atomic # 1 Polarization: 34.85 SS G_CDS: -0.40 Total: 34.45 kcal
Atomic # 6 Polarization: -8.79 SS G_CDS: 4.46 Total: -4.33 kcal
Atomic # 7 Polarization: -104.11 SS G_CDS: -3.54 Total: -107.65 kcal
Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal
Atomic # 9 Polarization: -7.68 SS G_CDS: 1.55 Total: -6.13 kcal
Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal
Total: -64.02 4.05 -59.97 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001280546392.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.429 kcal
(2) G-P(sol) polarization free energy of solvation -64.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.453 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.400 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds