Wall clock time and date at job start Tue Mar 31 2020 21:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.64435 * 2 1 4 4 C 1.54323 * 110.71807 * 123.14173 * 2 1 3 5 5 N 1.47021 * 107.27097 * 140.55956 * 4 2 1 6 6 C 1.34776 * 125.65152 * 181.02452 * 5 4 2 7 7 O 1.21280 * 120.00458 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99564 * 0.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47429 * 108.70411 * 1.28716 * 5 4 2 19 19 C 1.55132 * 104.72037 * 335.55463 * 18 5 4 20 20 H 1.09008 * 111.19070 * 279.19058 * 19 18 5 21 21 N 1.46896 * 110.93855 * 155.29226 * 19 18 5 22 22 C 1.46891 * 111.00413 * 92.95661 * 21 19 18 23 23 C 1.50701 * 109.47256 * 179.97438 * 22 21 19 24 24 C 1.39863 * 126.04033 * 90.02737 * 23 22 21 25 25 N 1.30840 * 108.20741 * 179.97438 * 24 23 22 26 26 N 1.40087 * 108.20112 * 359.97438 * 25 24 23 27 27 C 1.46501 * 126.03775 * 180.02562 * 26 25 24 28 28 C 1.34949 * 107.92612 * 359.75733 * 26 25 24 29 29 H 1.08994 * 109.47714 * 298.31125 * 1 2 3 30 30 H 1.09010 * 109.46725 * 58.31403 * 1 2 3 31 31 H 1.09001 * 109.46858 * 178.30515 * 1 2 3 32 32 H 1.09002 * 109.88568 * 21.14211 * 4 2 1 33 33 H 1.09003 * 110.01439 * 260.04626 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.36443 * 94.48240 * 18 5 4 38 38 H 1.09001 * 110.36590 * 216.81013 * 18 5 4 39 39 H 1.00900 * 111.00070 * 328.99772 * 21 19 18 40 40 H 1.09006 * 109.47151 * 300.00154 * 22 21 19 41 41 H 1.08998 * 109.47522 * 59.99690 * 22 21 19 42 42 H 1.08008 * 125.90156 * 359.97438 * 24 23 22 43 43 H 1.08996 * 109.47205 * 89.97530 * 27 26 25 44 44 H 1.09003 * 109.46754 * 209.97247 * 27 26 25 45 45 H 1.08997 * 109.46828 * 329.96950 * 27 26 25 46 46 H 1.07997 * 126.12967 * 180.23911 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7417 6 6 3.9923 -2.3810 1.4938 7 8 4.9384 -2.9585 1.0015 8 6 3.6527 -2.5934 2.9467 9 16 4.8325 -3.7549 3.6784 10 6 4.2179 -3.8163 5.3286 11 1 3.3528 -3.2318 5.6047 12 6 4.8457 -4.6160 6.2736 13 7 5.8998 -5.3287 5.9370 14 14 4.1937 -4.6817 8.0229 15 1 3.0080 -3.7957 8.1429 16 1 5.2494 -4.2249 8.9621 17 1 3.8058 -6.0762 8.3546 18 6 3.4666 -1.2466 -0.6839 19 6 2.0790 -0.7974 -1.2124 20 1 1.4452 -1.6560 -1.4347 21 7 2.2211 0.0677 -2.3911 22 6 2.1552 -0.7168 -3.6311 23 6 2.3037 0.2026 -4.8159 24 6 3.5063 0.5622 -5.4328 25 7 3.2317 1.3722 -6.4229 26 7 1.8433 1.5535 -6.4677 27 6 1.1133 2.3862 -7.4268 28 6 1.2965 0.8209 -5.4750 29 1 -0.3634 0.4873 0.9047 30 1 -0.3633 0.5399 -0.8746 31 1 -0.3633 -1.0272 -0.0304 32 1 1.3129 -1.4732 1.5801 33 1 2.3735 -0.1010 1.9999 34 1 2.6445 -2.9992 3.0287 35 1 3.7055 -1.6415 3.4750 36 1 6.2382 -5.2949 5.0285 37 1 4.1947 -0.4427 -0.7920 38 1 3.8032 -2.1382 -1.2131 39 1 3.0757 0.6023 -2.3463 40 1 2.9594 -1.4527 -3.6387 41 1 1.1943 -1.2284 -3.6869 42 1 4.4917 0.2288 -5.1421 43 1 0.8481 1.7886 -8.2989 44 1 0.2062 2.7689 -6.9591 45 1 1.7426 3.2208 -7.7360 46 1 0.2439 0.7442 -5.2458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281379783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:08 Heat of formation + Delta-G solvation = 42.684232 kcal Electronic energy + Delta-G solvation = -25904.814521 eV Core-core repulsion = 22150.227195 eV Total energy + Delta-G solvation = -3754.587325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.54545 -40.08568 -37.94379 -35.54996 -33.55430 -32.64561 -32.51879 -31.09406 -29.91827 -28.20264 -26.89851 -26.40001 -24.87515 -24.44678 -22.41893 -21.46259 -20.89160 -20.30546 -19.41172 -18.22518 -17.24560 -16.77457 -16.54301 -15.89862 -15.81961 -15.04353 -14.95308 -14.83045 -14.29989 -14.08018 -13.86258 -13.83366 -13.62841 -13.49641 -13.34698 -13.06530 -12.93604 -12.64441 -12.59779 -12.41331 -12.31796 -12.15678 -11.86720 -11.82763 -11.39206 -11.18503 -10.95981 -10.89729 -10.80976 -10.20384 -9.79220 -9.58283 -9.53923 -9.00706 -8.94478 -8.66908 -8.50241 -8.21352 -6.66891 -6.61952 -3.99763 1.51975 2.13715 2.37960 2.79651 2.96527 3.33271 3.40825 3.44549 3.55136 3.95450 4.10534 4.23000 4.29536 4.38192 4.45619 4.65280 4.67196 4.71831 4.90277 4.92124 4.99355 5.00718 5.02371 5.09396 5.22833 5.29355 5.35874 5.39978 5.41961 5.44947 5.57558 5.59500 5.65263 5.75227 5.79788 5.82109 5.92650 6.02656 6.06608 6.25795 6.32140 6.60406 6.71830 7.02884 7.32270 7.59061 7.93777 8.45826 8.50667 9.27603 10.82144 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.001810 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.371920 B =15467.654054 C =16194.919980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.088 0.912 4 C 0.102 3.898 5 N -0.622 5.622 6 C 0.547 3.453 7 O -0.518 6.518 8 C -0.123 4.123 9 S -0.118 6.118 10 C -0.607 4.607 11 H 0.067 0.933 12 C 0.035 3.965 13 N -0.885 5.885 14 Si 1.090 2.910 15 H -0.288 1.288 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.081 3.919 19 C 0.079 3.921 20 H 0.095 0.905 21 N -0.670 5.670 22 C 0.136 3.864 23 C -0.237 4.237 24 C 0.055 3.945 25 N -0.300 5.300 26 N -0.379 5.379 27 C 0.102 3.898 28 C 0.076 3.924 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.278 0.722 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.345 0.655 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.181 0.819 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.468 16.579 -23.805 32.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.107 0.893 4 C -0.021 4.021 5 N -0.360 5.360 6 C 0.335 3.665 7 O -0.392 6.392 8 C -0.275 4.275 9 S 0.108 5.892 10 C -0.755 4.755 11 H 0.085 0.915 12 C -0.175 4.175 13 N -0.519 5.519 14 Si 0.917 3.083 15 H -0.214 1.214 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.044 4.044 19 C -0.032 4.032 20 H 0.113 0.887 21 N -0.300 5.300 22 C 0.006 3.994 23 C -0.249 4.249 24 C -0.132 4.132 25 N -0.121 5.121 26 N -0.161 5.161 27 C -0.040 4.040 28 C -0.071 4.071 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.164 0.836 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.198 0.802 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -14.023 15.951 -24.115 32.135 hybrid contribution -0.978 0.608 -0.126 1.158 sum -15.001 16.559 -24.241 32.968 Atomic orbital electron populations 1.21681 0.93519 1.01987 1.02136 1.22174 0.96619 0.99499 0.92620 0.89346 1.22182 0.87897 0.94862 0.97188 1.48337 1.31006 1.45991 1.10633 1.20021 0.81459 0.77344 0.87669 1.90707 1.27985 1.47134 1.73370 1.23284 1.05314 1.05103 0.93750 1.84822 1.38935 1.55383 1.10014 1.23759 1.20326 1.36251 0.95142 0.91515 1.26059 0.94413 0.92089 1.04971 1.70734 1.21427 1.37415 1.22370 0.83247 0.75390 0.76504 0.73206 1.21391 1.20883 1.20877 1.22954 0.97702 1.01140 0.82578 1.22928 0.94978 0.95185 0.90121 0.88721 1.60618 1.43590 1.25467 1.00327 1.20175 1.01398 0.92393 0.85407 1.19925 0.92134 1.09439 1.03378 1.23850 0.99456 0.96227 0.93657 1.77386 0.91024 1.21423 1.22252 1.48496 1.04995 1.37099 1.25500 1.21856 0.96047 0.94625 0.91459 1.22337 0.99774 0.94589 0.90431 0.92494 0.91658 0.92660 0.91097 0.91243 0.89025 0.89041 0.90920 0.91694 0.90579 0.83619 0.94009 0.90390 0.80175 0.90794 0.89413 0.89301 0.80913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.13 37.16 0.34 -0.61 16 2 C -0.09 -0.74 3.24 -88.79 -0.29 -1.03 16 3 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.10 1.11 6.08 -3.06 -0.02 1.10 16 5 N -0.62 -9.00 3.32 -170.38 -0.57 -9.57 16 6 C 0.55 10.72 7.87 -10.98 -0.09 10.63 16 7 O -0.52 -12.15 16.12 5.56 0.09 -12.06 16 8 C -0.12 -2.59 5.35 36.01 0.19 -2.39 16 9 S -0.12 -3.23 19.60 -107.50 -2.11 -5.34 16 10 C -0.61 -17.65 9.50 30.94 0.29 -17.36 16 11 H 0.07 1.86 7.80 -52.49 -0.41 1.46 16 12 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 13 N -0.89 -27.74 13.67 55.49 0.76 -26.98 16 14 Si 1.09 25.18 29.92 -169.99 -5.09 20.09 16 15 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.08 0.95 6.51 -2.41 -0.02 0.93 16 19 C 0.08 0.67 2.84 -65.45 -0.19 0.48 16 20 H 0.09 0.82 7.72 -51.92 -0.40 0.42 16 21 N -0.67 -4.89 6.40 -105.60 -0.68 -5.57 16 22 C 0.14 0.94 6.03 -4.98 -0.03 0.91 16 23 C -0.24 -1.82 5.61 -105.05 -0.59 -2.41 16 24 C 0.05 0.48 11.96 -17.37 -0.21 0.27 16 25 N -0.30 -3.04 12.58 30.63 0.39 -2.65 16 26 N -0.38 -2.89 4.01 -68.16 -0.27 -3.17 16 27 C 0.10 0.36 11.47 59.85 0.69 1.05 16 28 C 0.08 0.52 11.40 -17.22 -0.20 0.32 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.05 0.39 8.13 -51.93 -0.42 -0.03 16 32 H 0.07 0.75 7.82 -51.93 -0.41 0.35 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 35 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 36 H 0.28 8.92 7.13 -40.82 -0.29 8.63 16 37 H 0.06 0.73 7.76 -51.93 -0.40 0.33 16 38 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 39 H 0.34 2.57 8.18 -39.29 -0.32 2.25 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 42 H 0.18 1.22 8.06 -52.48 -0.42 0.79 16 43 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -37.43 397.61 -9.05 -46.48 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.36 Total: -0.07 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -0.20 Total: -7.17 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.37 Total: -47.93 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.09 Total: 20.09 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -2.11 Total: -5.34 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.43 -9.05 -46.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281379783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.164 kcal (2) G-P(sol) polarization free energy of solvation -37.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds