Wall clock time and date at job start Tue Mar 31 2020 21:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.64435 * 2 1 4 4 C 1.54323 * 110.71807 * 123.14173 * 2 1 3 5 5 N 1.47021 * 107.27097 * 140.55956 * 4 2 1 6 6 C 1.34776 * 125.65152 * 181.02452 * 5 4 2 7 7 O 1.21280 * 120.00458 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99564 * 0.02562 * 6 5 4 9 9 S 1.81008 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99767 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00286 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99642 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00322 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99881 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47261 * 239.99700 * 14 12 10 17 17 H 1.48500 * 109.47454 * 119.99693 * 14 12 10 18 18 C 1.47429 * 108.70411 * 1.28716 * 5 4 2 19 19 C 1.55132 * 104.72037 * 335.55463 * 18 5 4 20 20 H 1.09008 * 111.19070 * 279.19058 * 19 18 5 21 21 N 1.46896 * 110.93855 * 155.29226 * 19 18 5 22 22 C 1.46891 * 111.00413 * 92.95661 * 21 19 18 23 23 C 1.50701 * 109.47256 * 179.97438 * 22 21 19 24 24 C 1.39863 * 126.04033 * 90.02737 * 23 22 21 25 25 N 1.30840 * 108.20741 * 179.97438 * 24 23 22 26 26 N 1.40087 * 108.20112 * 359.97438 * 25 24 23 27 27 C 1.46501 * 126.03775 * 180.02562 * 26 25 24 28 28 C 1.34949 * 107.92612 * 359.75733 * 26 25 24 29 29 H 1.08994 * 109.47714 * 298.31125 * 1 2 3 30 30 H 1.09010 * 109.46725 * 58.31403 * 1 2 3 31 31 H 1.09001 * 109.46858 * 178.30515 * 1 2 3 32 32 H 1.09002 * 109.88568 * 21.14211 * 4 2 1 33 33 H 1.09003 * 110.01439 * 260.04626 * 4 2 1 34 34 H 1.08998 * 109.47573 * 60.00437 * 8 6 5 35 35 H 1.09000 * 109.46955 * 299.99406 * 8 6 5 36 36 H 0.97004 * 120.00251 * 0.02562 * 13 12 10 37 37 H 1.08997 * 110.36443 * 94.48240 * 18 5 4 38 38 H 1.09001 * 110.36590 * 216.81013 * 18 5 4 39 39 H 1.00900 * 111.00070 * 328.99772 * 21 19 18 40 40 H 1.09006 * 109.47151 * 300.00154 * 22 21 19 41 41 H 1.08998 * 109.47522 * 59.99690 * 22 21 19 42 42 H 1.08008 * 125.90156 * 359.97438 * 24 23 22 43 43 H 1.08996 * 109.47205 * 89.97530 * 27 26 25 44 44 H 1.09003 * 109.46754 * 209.97247 * 27 26 25 45 45 H 1.08997 * 109.46828 * 329.96950 * 27 26 25 46 46 H 1.07997 * 126.12967 * 180.23911 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7417 6 6 3.9923 -2.3810 1.4938 7 8 4.9384 -2.9585 1.0015 8 6 3.6527 -2.5934 2.9467 9 16 4.8325 -3.7549 3.6784 10 6 4.2179 -3.8163 5.3286 11 1 3.3528 -3.2318 5.6047 12 6 4.8457 -4.6160 6.2736 13 7 5.8998 -5.3287 5.9370 14 14 4.1937 -4.6817 8.0229 15 1 3.0080 -3.7957 8.1429 16 1 5.2494 -4.2249 8.9621 17 1 3.8058 -6.0762 8.3546 18 6 3.4666 -1.2466 -0.6839 19 6 2.0790 -0.7974 -1.2124 20 1 1.4452 -1.6560 -1.4347 21 7 2.2211 0.0677 -2.3911 22 6 2.1552 -0.7168 -3.6311 23 6 2.3037 0.2026 -4.8159 24 6 3.5063 0.5622 -5.4328 25 7 3.2317 1.3722 -6.4229 26 7 1.8433 1.5535 -6.4677 27 6 1.1133 2.3862 -7.4268 28 6 1.2965 0.8209 -5.4750 29 1 -0.3634 0.4873 0.9047 30 1 -0.3633 0.5399 -0.8746 31 1 -0.3633 -1.0272 -0.0304 32 1 1.3129 -1.4732 1.5801 33 1 2.3735 -0.1010 1.9999 34 1 2.6445 -2.9992 3.0287 35 1 3.7055 -1.6415 3.4750 36 1 6.2382 -5.2949 5.0285 37 1 4.1947 -0.4427 -0.7920 38 1 3.8032 -2.1382 -1.2131 39 1 3.0757 0.6023 -2.3463 40 1 2.9594 -1.4527 -3.6387 41 1 1.1943 -1.2284 -3.6869 42 1 4.4917 0.2288 -5.1421 43 1 0.8481 1.7886 -8.2989 44 1 0.2062 2.7689 -6.9591 45 1 1.7426 3.2208 -7.7360 46 1 0.2439 0.7442 -5.2458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281379783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:07 Heat of formation + Delta-G solvation = 16.066525 kcal Electronic energy + Delta-G solvation = -25905.968751 eV Core-core repulsion = 22150.227195 eV Total energy + Delta-G solvation = -3755.741556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09220 -41.25108 -39.16450 -36.34311 -34.75870 -34.17924 -33.47455 -31.91845 -31.13456 -28.99504 -27.61209 -27.29646 -26.98674 -25.16519 -23.27315 -21.99726 -21.55709 -21.00254 -20.86240 -20.11685 -18.15985 -17.80431 -17.57791 -17.07012 -16.53009 -16.24633 -16.11774 -15.78175 -15.56731 -15.39813 -14.96690 -14.69524 -14.58291 -14.35904 -14.27933 -14.12420 -13.81385 -13.76501 -13.62971 -13.44100 -13.21649 -13.14454 -12.94781 -12.86066 -12.76015 -12.11487 -11.92456 -11.85918 -11.62699 -11.57515 -11.42761 -11.12229 -11.09156 -10.35361 -10.34095 -9.83058 -9.52077 -9.20458 -8.93752 -8.89718 -6.29463 0.99009 1.12459 1.42831 1.51318 1.62251 1.71603 1.77806 1.79244 1.98023 2.32711 3.01785 3.05622 3.24656 3.44951 3.57870 3.69315 3.80291 3.93917 4.05552 4.09111 4.19428 4.28629 4.31180 4.32327 4.41086 4.45550 4.48559 4.56710 4.66821 4.71280 4.76008 4.77630 4.86173 4.90818 4.93239 5.13200 5.22112 5.25243 5.35708 5.50269 5.64013 5.68991 6.05494 6.13678 6.18269 6.27624 6.39553 6.75475 6.98135 7.05457 8.49742 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031056 B = 0.001810 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.371920 B =15467.654054 C =16194.919980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 H 0.095 0.905 4 C 0.092 3.908 5 N -0.612 5.612 6 C 0.544 3.456 7 O -0.569 6.569 8 C -0.099 4.099 9 S -0.196 6.196 10 C -0.613 4.613 11 H 0.075 0.925 12 C -0.019 4.019 13 N -0.913 5.913 14 Si 1.143 2.857 15 H -0.262 1.262 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.076 3.924 19 C 0.095 3.905 20 H 0.099 0.901 21 N -0.659 5.659 22 C 0.141 3.859 23 C -0.250 4.250 24 C 0.042 3.958 25 N -0.342 5.342 26 N -0.383 5.383 27 C 0.093 3.907 28 C 0.081 3.919 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.345 0.655 40 H 0.034 0.966 41 H 0.089 0.911 42 H 0.187 0.813 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.898 18.479 -23.735 35.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.097 4.097 3 H 0.113 0.887 4 C -0.030 4.030 5 N -0.346 5.346 6 C 0.332 3.668 7 O -0.448 6.448 8 C -0.251 4.251 9 S 0.031 5.969 10 C -0.760 4.760 11 H 0.094 0.906 12 C -0.222 4.222 13 N -0.549 5.549 14 Si 0.960 3.040 15 H -0.186 1.186 16 H -0.200 1.200 17 H -0.199 1.199 18 C -0.048 4.048 19 C -0.016 4.016 20 H 0.117 0.883 21 N -0.289 5.289 22 C 0.012 3.988 23 C -0.262 4.262 24 C -0.144 4.144 25 N -0.164 5.164 26 N -0.165 5.165 27 C -0.047 4.047 28 C -0.067 4.067 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.164 0.836 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.204 0.796 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.104 0.896 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -17.501 17.913 -24.104 34.758 hybrid contribution 0.009 0.138 -0.321 0.350 sum -17.492 18.051 -24.425 35.048 Atomic orbital electron populations 1.21649 0.91930 1.02277 1.02933 1.22139 0.97664 0.99131 0.90776 0.88656 1.22545 0.86628 0.95067 0.98784 1.48281 1.30693 1.44137 1.11488 1.19753 0.81565 0.78110 0.87390 1.90686 1.30397 1.49647 1.74055 1.23146 1.03674 1.03651 0.94590 1.85070 1.42504 1.58433 1.10942 1.24077 1.20358 1.36058 0.95524 0.90632 1.27865 0.93740 0.91093 1.09473 1.70860 1.23202 1.39351 1.21445 0.82645 0.75888 0.77514 0.67930 1.18604 1.19994 1.19928 1.23224 1.00224 1.00647 0.80748 1.22819 0.92631 0.95510 0.90657 0.88303 1.60679 1.43457 1.24814 0.99994 1.20148 1.01683 0.92062 0.84955 1.20024 0.92038 1.10183 1.03921 1.24100 1.00407 0.96191 0.93704 1.77315 0.92963 1.22748 1.23394 1.48832 1.04362 1.37224 1.26056 1.22169 0.96618 0.94356 0.91588 1.22847 1.00962 0.93374 0.89497 0.91755 0.90826 0.92635 0.90244 0.90494 0.87286 0.87429 0.92855 0.91144 0.92293 0.83588 0.94777 0.89287 0.79595 0.89739 0.86627 0.89569 0.77856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.13 71.98 0.66 -0.67 16 2 C -0.08 -1.04 3.24 -9.61 -0.03 -1.07 16 3 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.09 1.76 6.08 86.73 0.53 2.29 16 5 N -0.61 -17.01 3.32 -811.33 -2.70 -19.71 16 6 C 0.54 21.38 7.87 87.66 0.69 22.07 16 7 O -0.57 -27.65 16.12 -3.03 -0.05 -27.70 16 8 C -0.10 -4.12 5.35 71.24 0.38 -3.73 16 9 S -0.20 -11.06 19.60 -56.49 -1.11 -12.16 16 10 C -0.61 -35.73 9.50 67.95 0.65 -35.08 16 11 H 0.08 4.14 7.80 -2.91 -0.02 4.11 16 12 C -0.02 -1.09 5.49 84.86 0.47 -0.62 16 13 N -0.91 -58.49 13.67 21.65 0.30 -58.19 16 14 Si 1.14 49.62 29.92 68.60 2.05 51.67 16 15 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 18 C 0.08 1.71 6.51 86.93 0.57 2.28 16 19 C 0.10 1.39 2.84 46.39 0.13 1.53 16 20 H 0.10 1.44 7.72 -2.38 -0.02 1.42 16 21 N -0.66 -8.10 6.40 -488.02 -3.12 -11.22 16 22 C 0.14 1.71 6.03 85.56 0.52 2.22 16 23 C -0.25 -3.48 5.61 -20.14 -0.11 -3.59 16 24 C 0.04 0.72 11.96 85.23 1.02 1.74 16 25 N -0.34 -6.85 12.58 -57.02 -0.72 -7.57 16 26 N -0.38 -5.27 4.01 -369.57 -1.48 -6.76 16 27 C 0.09 0.49 11.47 127.77 1.47 1.95 16 28 C 0.08 0.92 11.40 83.54 0.95 1.87 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.05 0.59 8.13 -2.39 -0.02 0.57 16 32 H 0.08 1.44 7.82 -2.39 -0.02 1.42 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 4.12 8.14 -2.40 -0.02 4.10 16 35 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 36 H 0.26 17.40 7.13 -92.70 -0.66 16.74 16 37 H 0.07 1.53 7.76 -2.39 -0.02 1.51 16 38 H 0.06 1.55 8.03 -2.39 -0.02 1.53 16 39 H 0.34 4.51 8.18 -89.69 -0.73 3.77 16 40 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.09 0.90 8.09 -2.39 -0.02 0.89 16 42 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 43 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.12 -0.06 8.14 -2.39 -0.02 -0.07 16 45 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -84.32 397.61 1.39 -82.92 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.35 Total: 17.54 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 7.87 Total: -8.82 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -7.73 Total: -103.45 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.70 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.05 Total: 51.67 kcal Atomic # 16 Polarization: -11.06 SS G_CDS: -1.11 Total: -12.16 kcal Total: -84.32 1.39 -82.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281379783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.989 kcal (2) G-P(sol) polarization free energy of solvation -84.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds