Wall clock time and date at job start Tue Mar 31 2020 21:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00163 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46661 * 60.00586 * 13 11 9 15 15 H 1.48501 * 109.47391 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47355 * 300.00441 * 13 11 9 17 17 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 18 18 C 1.53937 * 113.73173 * 158.76410 * 17 2 1 19 19 N 1.48194 * 86.10244 * 221.95796 * 18 17 2 20 20 C 1.46894 * 111.07186 * 137.52019 * 19 18 17 21 21 C 1.50703 * 109.47170 * 90.56750 * 20 19 18 22 22 C 1.39867 * 126.03581 * 90.02560 * 21 20 19 23 23 N 1.30838 * 108.19908 * 179.97438 * 22 21 20 24 24 N 1.40081 * 108.20948 * 0.02562 * 23 22 21 25 25 C 1.46501 * 126.04264 * 180.02562 * 24 23 22 26 26 C 1.34951 * 107.92478 * 359.75454 * 24 23 22 27 27 C 1.47964 * 90.79527 * 24.60190 * 19 18 17 28 28 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 33 33 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 34 34 H 0.96991 * 119.99795 * 179.97438 * 12 11 9 35 35 H 1.09000 * 112.94215 * 290.33673 * 17 2 1 36 36 H 1.08996 * 113.76167 * 336.23987 * 18 17 2 37 37 H 1.08997 * 113.76180 * 107.60803 * 18 17 2 38 38 H 1.08997 * 109.47443 * 210.57071 * 20 19 18 39 39 H 1.09004 * 109.47135 * 330.57091 * 20 19 18 40 40 H 1.07999 * 125.90545 * 359.95468 * 22 21 20 41 41 H 1.09007 * 109.46743 * 89.97106 * 25 24 23 42 42 H 1.09000 * 109.47367 * 209.97248 * 25 24 23 43 43 H 1.08992 * 109.46819 * 329.97447 * 25 24 23 44 44 H 1.07995 * 126.13510 * 180.24487 * 26 24 23 45 45 H 1.09002 * 113.75724 * 221.08037 * 27 19 18 46 46 H 1.08997 * 113.76188 * 89.72375 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 16 2.7270 0.4388 4.9688 9 6 3.3357 -0.6251 6.2346 10 1 3.5447 -1.6616 6.0147 11 6 3.5475 -0.1307 7.5142 12 7 3.2932 1.1328 7.7821 13 14 4.1921 -1.2586 8.8564 14 1 5.5168 -1.7974 8.4562 15 1 4.3302 -0.4938 10.1218 16 1 3.2415 -2.3814 9.0584 17 6 2.0400 -0.7213 -1.2492 18 6 3.4849 -0.3524 -1.6311 19 7 2.9994 -0.3203 -3.0309 20 6 3.5498 0.8335 -3.7545 21 6 4.8445 0.4394 -4.4177 22 6 4.9823 -0.0851 -5.7069 23 7 6.2540 -0.3005 -5.9266 24 7 6.9666 0.0800 -4.7823 25 6 8.4189 0.0035 -4.6060 26 6 6.0795 0.5353 -3.8729 27 6 1.6207 -0.0474 -2.5682 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2491 -1.6318 1.1526 32 1 1.9894 -1.5476 3.8337 33 1 3.6590 -1.1179 3.3911 34 1 3.4409 1.4781 8.6764 35 1 1.8527 -1.7948 -1.2262 36 1 3.8041 0.6194 -1.2547 37 1 4.2072 -1.1444 -1.4337 38 1 2.8381 1.1603 -4.5125 39 1 3.7338 1.6478 -3.0537 40 1 4.1780 -0.2790 -6.4011 41 1 8.8749 0.9359 -4.9390 42 1 8.6492 -0.1579 -3.5529 43 1 8.8132 -0.8244 -5.1952 44 1 6.3130 0.9075 -2.8864 45 1 0.8562 -0.5963 -3.1182 46 1 1.3935 1.0137 -2.4665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282690650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:26 Heat of formation + Delta-G solvation = 76.154891 kcal Electronic energy + Delta-G solvation = -25839.290000 eV Core-core repulsion = 22086.154072 eV Total energy + Delta-G solvation = -3753.135929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50645 -40.42400 -38.92246 -35.29428 -33.77841 -32.43757 -32.15893 -30.98030 -28.96994 -28.46299 -26.95244 -26.16160 -25.48871 -24.44733 -22.05951 -21.35334 -20.52096 -20.27402 -19.69329 -17.84179 -17.14638 -16.59365 -16.44952 -15.98347 -15.53396 -15.14988 -14.87660 -14.85216 -14.80547 -14.44671 -14.13419 -13.77975 -13.44622 -13.20425 -13.10365 -12.99801 -12.93272 -12.82943 -12.66983 -12.59010 -11.95128 -11.79311 -11.60703 -11.22835 -11.05669 -11.04870 -10.95779 -10.86673 -10.76156 -10.72825 -9.82980 -9.69092 -9.39243 -9.16032 -9.06683 -8.80171 -8.64656 -8.24755 -6.50762 -6.22435 -3.92963 1.60870 2.23795 2.50231 3.02287 3.10314 3.22594 3.26683 3.30123 3.67606 3.75903 4.19764 4.20319 4.23061 4.46021 4.52594 4.72198 4.76438 4.81669 4.97992 5.01651 5.02846 5.06336 5.12586 5.17878 5.20571 5.28618 5.33981 5.38774 5.48250 5.53715 5.55465 5.59010 5.69945 5.70616 5.85606 5.88947 6.06849 6.11981 6.14150 6.23386 6.37723 6.67979 6.69661 6.79801 7.42505 7.58464 7.73733 8.34207 8.63166 9.22786 10.84905 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.002037 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.178044 B =13741.006212 C =15261.602356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.519 6.519 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C -0.122 4.122 18 C 0.010 3.990 19 N -0.475 5.475 20 C 0.098 3.902 21 C -0.224 4.224 22 C 0.064 3.936 23 N -0.303 5.303 24 N -0.378 5.378 25 C 0.102 3.898 26 C 0.062 3.938 27 C 0.012 3.988 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.269 0.731 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.181 0.819 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.170 0.830 45 H 0.091 0.909 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.532 -3.708 -26.287 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.319 3.681 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.684 4.684 10 H 0.090 0.910 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.199 1.199 17 C -0.141 4.141 18 C -0.118 4.118 19 N -0.197 5.197 20 C -0.031 4.031 21 C -0.236 4.236 22 C -0.123 4.123 23 N -0.124 5.124 24 N -0.160 5.160 25 C -0.040 4.040 26 C -0.085 4.085 27 C -0.117 4.117 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.198 0.802 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.188 0.812 45 H 0.109 0.891 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.239 -2.543 -27.327 27.636 hybrid contribution 0.264 -1.533 1.895 2.451 sum 3.503 -4.075 -25.433 25.995 Atomic orbital electron populations 1.22155 0.95247 1.02134 1.02569 1.20911 0.94158 0.97070 0.83207 0.89613 1.46062 1.69244 1.13853 1.09522 1.20294 0.76818 0.87202 0.83760 1.90694 1.48494 1.15799 1.84336 1.23537 1.03592 1.04865 0.98445 1.85378 1.86128 1.12881 0.98997 1.22829 1.50874 0.98146 0.96559 0.91000 1.24993 0.95125 0.95536 0.97940 1.70006 1.45470 1.13175 1.21654 0.86229 0.79317 0.80025 0.79957 1.19954 1.20818 1.19933 1.23266 0.96026 1.01283 0.93531 1.24079 0.96977 1.01777 0.89014 1.68609 1.02957 1.36425 1.11708 1.20862 0.92812 0.91890 0.97555 1.19826 0.94204 1.13279 0.96301 1.23734 0.94016 0.98083 0.96442 1.77350 1.05413 1.23243 1.06411 1.48439 1.07051 1.49293 1.11182 1.21859 0.74915 1.03765 1.03454 1.22346 0.89678 1.00351 0.96128 1.23910 0.93208 1.00141 0.94412 0.91899 0.92488 0.91697 0.76890 0.89281 0.89318 0.92137 0.87902 0.90943 0.89563 0.90136 0.93154 0.80204 0.90795 0.89391 0.89316 0.81248 0.89052 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.31 37.16 0.35 -1.33 16 2 C 0.15 1.63 2.38 -67.93 -0.16 1.47 16 3 H 0.09 1.10 7.41 -51.93 -0.38 0.71 16 4 N -0.73 -9.18 5.08 -53.81 -0.27 -9.46 16 5 C 0.53 9.55 7.82 -10.98 -0.09 9.46 16 6 O -0.52 -11.37 15.52 5.55 0.09 -11.29 16 7 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 8 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 9 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 10 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 13 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 14 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 C -0.12 -0.99 3.46 -89.69 -0.31 -1.30 16 18 C 0.01 0.09 7.53 -2.63 -0.02 0.07 16 19 N -0.47 -4.03 6.14 -239.49 -1.47 -5.50 16 20 C 0.10 0.78 5.28 -4.98 -0.03 0.75 16 21 C -0.22 -2.04 5.66 -105.05 -0.59 -2.64 16 22 C 0.06 0.62 11.96 -17.37 -0.21 0.41 16 23 N -0.30 -3.37 12.58 30.62 0.39 -2.99 16 24 N -0.38 -3.46 4.01 -68.16 -0.27 -3.73 16 25 C 0.10 0.53 11.47 59.85 0.69 1.22 16 26 C 0.06 0.54 11.40 -17.22 -0.20 0.34 16 27 C 0.01 0.09 6.65 -2.76 -0.02 0.07 16 28 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 29 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 32 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.66 7.33 -51.93 -0.38 0.28 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.05 0.39 7.39 -51.93 -0.38 0.01 16 40 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 LS Contribution 399.93 15.07 6.03 6.03 Total: -1.00 -36.28 399.93 -9.53 -45.81 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -7.34 Total: 1.16 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.17 Total: -7.15 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.90 Total: -46.96 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.28 -9.53 -45.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282690650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.963 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds