Wall clock time and date at job start Tue Mar 31 2020 21:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00163 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46661 * 60.00586 * 13 11 9 15 15 H 1.48501 * 109.47391 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47355 * 300.00441 * 13 11 9 17 17 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 18 18 C 1.53937 * 113.73173 * 158.76410 * 17 2 1 19 19 N 1.48194 * 86.10244 * 221.95796 * 18 17 2 20 20 C 1.46894 * 111.07186 * 137.52019 * 19 18 17 21 21 C 1.50703 * 109.47170 * 90.56750 * 20 19 18 22 22 C 1.39867 * 126.03581 * 90.02560 * 21 20 19 23 23 N 1.30838 * 108.19908 * 179.97438 * 22 21 20 24 24 N 1.40081 * 108.20948 * 0.02562 * 23 22 21 25 25 C 1.46501 * 126.04264 * 180.02562 * 24 23 22 26 26 C 1.34951 * 107.92478 * 359.75454 * 24 23 22 27 27 C 1.47964 * 90.79527 * 24.60190 * 19 18 17 28 28 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 32 32 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 33 33 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 34 34 H 0.96991 * 119.99795 * 179.97438 * 12 11 9 35 35 H 1.09000 * 112.94215 * 290.33673 * 17 2 1 36 36 H 1.08996 * 113.76167 * 336.23987 * 18 17 2 37 37 H 1.08997 * 113.76180 * 107.60803 * 18 17 2 38 38 H 1.08997 * 109.47443 * 210.57071 * 20 19 18 39 39 H 1.09004 * 109.47135 * 330.57091 * 20 19 18 40 40 H 1.07999 * 125.90545 * 359.95468 * 22 21 20 41 41 H 1.09007 * 109.46743 * 89.97106 * 25 24 23 42 42 H 1.09000 * 109.47367 * 209.97248 * 25 24 23 43 43 H 1.08992 * 109.46819 * 329.97447 * 25 24 23 44 44 H 1.07995 * 126.13510 * 180.24487 * 26 24 23 45 45 H 1.09002 * 113.75724 * 221.08037 * 27 19 18 46 46 H 1.08997 * 113.76188 * 89.72375 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 16 2.7270 0.4388 4.9688 9 6 3.3357 -0.6251 6.2346 10 1 3.5447 -1.6616 6.0147 11 6 3.5475 -0.1307 7.5142 12 7 3.2932 1.1328 7.7821 13 14 4.1921 -1.2586 8.8564 14 1 5.5168 -1.7974 8.4562 15 1 4.3302 -0.4938 10.1218 16 1 3.2415 -2.3814 9.0584 17 6 2.0400 -0.7213 -1.2492 18 6 3.4849 -0.3524 -1.6311 19 7 2.9994 -0.3203 -3.0309 20 6 3.5498 0.8335 -3.7545 21 6 4.8445 0.4394 -4.4177 22 6 4.9823 -0.0851 -5.7069 23 7 6.2540 -0.3005 -5.9266 24 7 6.9666 0.0800 -4.7823 25 6 8.4189 0.0035 -4.6060 26 6 6.0795 0.5353 -3.8729 27 6 1.6207 -0.0474 -2.5682 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.2491 -1.6318 1.1526 32 1 1.9894 -1.5476 3.8337 33 1 3.6590 -1.1179 3.3911 34 1 3.4409 1.4781 8.6764 35 1 1.8527 -1.7948 -1.2262 36 1 3.8041 0.6194 -1.2547 37 1 4.2072 -1.1444 -1.4337 38 1 2.8381 1.1603 -4.5125 39 1 3.7338 1.6478 -3.0537 40 1 4.1780 -0.2790 -6.4011 41 1 8.8749 0.9359 -4.9390 42 1 8.6492 -0.1579 -3.5529 43 1 8.8132 -0.8244 -5.1952 44 1 6.3130 0.9075 -2.8864 45 1 0.8562 -0.5963 -3.1182 46 1 1.3935 1.0137 -2.4665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282690650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:25 Heat of formation + Delta-G solvation = 49.100864 kcal Electronic energy + Delta-G solvation = -25840.463151 eV Core-core repulsion = 22086.154072 eV Total energy + Delta-G solvation = -3754.309079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.15625 -41.25655 -40.14725 -36.37458 -34.57582 -34.42031 -33.05687 -31.97647 -30.02612 -29.41268 -27.66591 -27.53131 -26.79148 -25.18446 -22.96141 -21.99258 -21.60709 -21.02029 -20.60014 -19.70676 -17.90071 -17.73374 -17.51666 -16.86979 -16.73302 -16.38544 -16.23424 -15.96282 -15.63900 -15.58771 -15.12162 -14.73977 -14.59939 -14.33510 -14.23164 -13.83263 -13.72416 -13.54854 -13.47435 -13.33784 -13.17298 -13.15107 -12.86148 -12.76330 -12.58371 -12.22647 -11.92619 -11.83140 -11.69378 -11.56119 -11.40007 -11.12108 -10.85728 -10.36340 -10.26232 -10.13136 -9.65781 -9.29293 -8.65045 -8.33675 -6.11364 0.95729 1.28388 1.44189 1.47860 1.57769 1.67019 1.70000 1.82956 2.27160 2.32970 3.00223 3.10379 3.33054 3.50165 3.68158 3.74604 3.95161 4.01448 4.13070 4.24709 4.31210 4.33067 4.38206 4.40996 4.41611 4.50983 4.53510 4.54495 4.61014 4.66765 4.78638 4.82435 4.88535 4.90476 4.92129 5.04591 5.07360 5.27529 5.36526 5.42491 5.51259 5.61487 5.73561 6.11029 6.17601 6.20494 6.57681 6.75605 7.07562 7.31454 8.75158 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013701 B = 0.002037 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.178044 B =13741.006212 C =15261.602356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 H 0.064 0.936 4 N -0.707 5.707 5 C 0.536 3.464 6 O -0.566 6.566 7 C -0.130 4.130 8 S -0.151 6.151 9 C -0.547 4.547 10 H 0.082 0.918 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.997 3.003 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.262 1.262 17 C -0.109 4.109 18 C 0.009 3.991 19 N -0.482 5.482 20 C 0.102 3.898 21 C -0.236 4.236 22 C 0.055 3.945 23 N -0.339 5.339 24 N -0.384 5.384 25 C 0.093 3.907 26 C 0.058 3.942 27 C 0.018 3.982 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.415 0.585 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.271 0.729 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.050 0.950 40 H 0.196 0.804 41 H 0.085 0.915 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.189 0.811 45 H 0.106 0.894 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.763 -5.879 -27.112 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.082 0.918 4 N -0.361 5.361 5 C 0.322 3.678 6 O -0.444 6.444 7 C -0.282 4.282 8 S 0.076 5.924 9 C -0.694 4.694 10 H 0.100 0.900 11 C -0.192 4.192 12 N -0.547 5.547 13 Si 0.819 3.181 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.187 1.187 17 C -0.128 4.128 18 C -0.120 4.120 19 N -0.204 5.204 20 C -0.027 4.027 21 C -0.248 4.248 22 C -0.131 4.131 23 N -0.162 5.162 24 N -0.166 5.166 25 C -0.047 4.047 26 C -0.090 4.090 27 C -0.111 4.111 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.251 0.749 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.135 0.865 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.213 0.787 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.206 0.794 45 H 0.124 0.876 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.476 -4.763 -28.208 28.818 hybrid contribution 0.191 -0.867 2.010 2.197 sum 3.667 -5.630 -26.198 27.046 Atomic orbital electron populations 1.22115 0.94517 1.02960 1.02057 1.21031 0.94631 0.96245 0.83226 0.91750 1.45840 1.67334 1.14487 1.08414 1.20000 0.76698 0.86546 0.84595 1.90686 1.50871 1.17751 1.85090 1.23385 1.05417 1.03166 0.96189 1.85553 1.86517 1.17300 1.03008 1.23173 1.50741 0.98487 0.97032 0.89966 1.26124 0.95153 0.97185 1.00733 1.70175 1.46807 1.15418 1.22341 0.85020 0.79087 0.77765 0.76228 1.18635 1.20451 1.18703 1.23190 0.95638 1.01713 0.92303 1.24049 0.97145 1.01351 0.89409 1.68611 1.03563 1.36822 1.11431 1.20848 0.92599 0.91628 0.97650 1.20034 0.94895 1.13609 0.96289 1.24085 0.94102 0.97801 0.97098 1.77281 1.06282 1.24705 1.07893 1.48761 1.08266 1.48847 1.10702 1.22137 0.73188 1.04467 1.04901 1.22734 0.89706 0.99824 0.96744 1.23960 0.93019 1.00556 0.93567 0.89627 0.90929 0.95038 0.74857 0.87447 0.87331 0.92023 0.86518 0.91702 0.89776 0.89190 0.93141 0.78692 0.89685 0.87380 0.89197 0.79409 0.87590 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.31 71.98 0.67 -2.31 16 2 C 0.15 3.04 2.38 44.99 0.11 3.15 16 3 H 0.06 1.62 7.41 -2.39 -0.02 1.60 16 4 N -0.71 -16.46 5.08 -442.53 -2.25 -18.70 16 5 C 0.54 18.94 7.82 87.66 0.69 19.62 16 6 O -0.57 -25.38 15.52 -3.04 -0.05 -25.43 16 7 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 8 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 9 C -0.55 -30.95 9.50 67.96 0.65 -30.30 16 10 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 11 C 0.01 0.73 5.49 84.86 0.47 1.19 16 12 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 13 Si 1.00 43.23 29.55 68.60 2.03 45.25 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 C -0.11 -1.49 3.46 -10.15 -0.04 -1.52 16 18 C 0.01 0.14 7.53 86.37 0.65 0.79 16 19 N -0.48 -7.13 6.14 -911.62 -5.60 -12.73 16 20 C 0.10 1.45 5.28 85.56 0.45 1.90 16 21 C -0.24 -4.05 5.66 -20.14 -0.11 -4.16 16 22 C 0.05 1.02 11.96 85.24 1.02 2.04 16 23 N -0.34 -7.43 12.58 -57.02 -0.72 -8.14 16 24 N -0.38 -6.71 4.01 -369.56 -1.48 -8.19 16 25 C 0.09 0.87 11.47 127.77 1.47 2.34 16 26 C 0.06 0.93 11.40 83.54 0.95 1.88 16 27 C 0.02 0.21 6.65 86.41 0.57 0.79 16 28 H 0.08 1.22 7.51 -2.39 -0.02 1.21 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.41 6.96 8.60 -92.71 -0.80 6.16 16 32 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 33 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 34 H 0.27 15.41 8.31 -92.72 -0.77 14.63 16 35 H 0.12 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.11 7.33 -2.39 -0.02 1.09 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.09 8.08 -2.39 -0.02 1.07 16 39 H 0.05 0.72 7.39 -2.38 -0.02 0.70 16 40 H 0.20 2.67 8.06 -2.91 -0.02 2.64 16 41 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.08 0.88 7.88 -2.39 -0.02 0.86 16 Total: -1.00 -81.17 399.93 -0.78 -81.96 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.18 Total: 20.04 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 7.98 Total: -9.19 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -9.76 Total: -103.18 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -81.17 -0.78 -81.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282690650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.058 kcal (2) G-P(sol) polarization free energy of solvation -81.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds