Wall clock time and date at job start Tue Mar 31 2020 21:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47319 * 2 1 4 4 C 1.50698 * 109.47258 * 239.99893 * 2 1 3 5 5 O 1.21278 * 120.00562 * 239.99956 * 4 2 1 6 6 N 1.34783 * 119.99820 * 59.99866 * 4 2 1 7 7 C 1.46503 * 119.99972 * 179.97438 * 6 4 2 8 8 H 1.08996 * 109.47040 * 325.00683 * 7 6 4 9 9 C 1.52998 * 109.46594 * 85.00387 * 7 6 4 10 10 C 1.53005 * 109.47080 * 205.00007 * 7 6 4 11 11 C 1.53947 * 113.73702 * 162.20017 * 10 7 6 12 12 N 1.47815 * 86.03305 * 222.08452 * 11 10 7 13 13 C 1.36943 * 134.45601 * 204.64129 * 12 11 10 14 14 H 1.07993 * 119.99753 * 182.58513 * 13 12 11 15 15 C 1.38810 * 119.99623 * 2.59220 * 13 12 11 16 16 N 1.31608 * 120.00364 * 353.41188 * 15 13 12 17 17 Si 1.86802 * 119.99595 * 173.41234 * 15 13 12 18 18 H 1.48505 * 109.47274 * 94.97152 * 17 15 13 19 19 H 1.48498 * 109.47201 * 214.97310 * 17 15 13 20 20 H 1.48504 * 109.47245 * 334.97341 * 17 15 13 21 21 C 1.47586 * 91.05178 * 24.55291 * 12 11 10 22 22 C 1.50697 * 109.47147 * 120.00148 * 2 1 3 23 23 C 1.38414 * 120.02660 * 59.72637 * 22 2 1 24 24 F 1.35101 * 120.01161 * 359.97438 * 23 22 2 25 25 C 1.38478 * 119.97513 * 179.70133 * 23 22 2 26 26 C 1.38211 * 120.02356 * 0.59168 * 25 23 22 27 27 C 1.38203 * 120.05194 * 359.68618 * 26 25 23 28 28 C 1.38424 * 120.02671 * 240.00072 * 22 2 1 29 29 F 1.35101 * 120.00763 * 359.97438 * 28 22 2 30 30 H 1.09001 * 109.46937 * 299.99566 * 1 2 3 31 31 H 1.09004 * 109.47228 * 60.00162 * 1 2 3 32 32 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00123 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47169 * 64.48626 * 9 7 6 35 35 H 1.09008 * 109.46820 * 184.48024 * 9 7 6 36 36 H 1.08999 * 109.47555 * 304.48221 * 9 7 6 37 37 H 1.08996 * 112.94407 * 293.79144 * 10 7 6 38 38 H 1.08991 * 113.77019 * 336.35181 * 11 10 7 39 39 H 1.08996 * 113.76471 * 107.75091 * 11 10 7 40 40 H 0.96999 * 120.00227 * 180.02562 * 16 15 13 41 41 H 1.08999 * 113.76332 * 221.14895 * 21 12 11 42 42 H 1.08994 * 113.87276 * 89.76549 * 21 12 11 43 43 H 1.08001 * 119.98845 * 180.27381 * 25 23 22 44 44 H 1.07999 * 119.97362 * 179.69915 * 26 25 23 45 45 H 1.07998 * 119.98963 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 1 3.1948 -1.3321 -3.4612 9 6 1.2519 -2.0944 -3.9948 10 6 2.2467 0.0431 -4.8219 11 6 3.1310 -0.4299 -5.9899 12 7 3.6162 0.9650 -6.0527 13 6 4.1650 1.7463 -7.0343 14 1 4.4822 2.7536 -6.8085 15 6 4.3133 1.2436 -8.3196 16 7 4.0486 -0.0219 -8.5660 17 14 4.8888 2.3632 -9.6998 18 1 6.3595 2.2350 -9.8606 19 1 4.2166 1.9744 -10.9655 20 1 4.5477 3.7705 -9.3703 21 6 3.2698 1.1779 -4.6339 22 6 2.0323 -0.7104 1.2304 23 6 1.6936 -2.0339 1.4528 24 9 0.9119 -2.6894 0.5671 25 6 2.1609 -2.6875 2.5807 26 6 2.9551 -2.0152 3.4903 27 6 3.2892 -0.6921 3.2722 28 6 2.8282 -0.0382 2.1420 29 9 3.1554 1.2551 1.9286 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1493 0.5389 -2.5436 34 1 0.2730 -1.6961 -4.2618 35 1 1.6572 -2.6566 -4.8362 36 1 1.1533 -2.7527 -3.1317 37 1 1.2600 0.3883 -5.1303 38 1 3.8966 -1.1487 -5.6983 39 1 2.5675 -0.7402 -6.8698 40 1 4.1526 -0.3732 -9.4641 41 1 2.8170 2.1489 -4.4333 42 1 4.0753 0.9331 -3.9417 43 1 1.9004 -3.7215 2.7522 44 1 3.3151 -2.5244 4.3721 45 1 3.9096 -0.1676 3.9839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282724207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:45 Heat of formation + Delta-G solvation = -51.105393 kcal Electronic energy + Delta-G solvation = -29596.466965 eV Core-core repulsion = 25251.679478 eV Total energy + Delta-G solvation = -4344.787486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.28137 -49.12800 -40.19606 -38.95151 -37.97543 -34.80663 -34.53427 -32.14225 -30.69094 -30.55403 -29.43582 -27.46047 -25.25306 -24.69656 -24.02084 -23.14054 -22.69849 -21.05198 -20.12598 -19.07431 -18.36700 -17.80916 -17.00978 -16.65772 -16.39199 -15.99799 -15.79006 -15.70046 -15.45712 -15.02179 -14.78703 -14.63245 -14.34880 -13.94384 -13.92173 -13.53436 -13.21950 -13.01773 -12.82269 -12.57210 -12.40045 -12.28277 -12.17154 -12.01679 -11.75754 -11.54301 -11.37095 -11.22874 -11.18669 -10.89017 -10.64040 -10.34782 -10.02450 -9.79981 -9.61900 -9.42335 -9.12774 -8.98684 -8.82614 -8.71681 -6.86845 -5.76034 -3.06866 0.66861 0.73180 2.72705 2.99506 3.35036 3.39935 3.44846 3.47108 3.64859 4.02652 4.14957 4.34550 4.46524 4.47717 4.74480 4.82455 4.86623 4.98617 5.14139 5.20806 5.33827 5.43038 5.43983 5.48217 5.56121 5.61640 5.66409 5.68493 5.73687 5.85005 5.85459 5.87916 6.03020 6.10799 6.30491 6.38488 6.47941 6.48121 6.61716 6.65229 6.83681 7.23570 7.39001 7.56622 7.65201 7.99479 8.34023 9.06018 9.72484 10.62058 11.41688 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.002474 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.752835 B =11314.488356 C =11907.550008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 H 0.113 0.887 4 C 0.519 3.481 5 O -0.533 6.533 6 N -0.715 5.715 7 C 0.151 3.849 8 H 0.086 0.914 9 C -0.156 4.156 10 C -0.146 4.146 11 C 0.176 3.824 12 N -0.612 5.612 13 C -0.223 4.223 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.290 1.290 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.125 3.875 22 C -0.138 4.138 23 C 0.164 3.836 24 F -0.121 7.121 25 C -0.169 4.169 26 C -0.062 4.062 27 C -0.169 4.169 28 C 0.135 3.865 29 F -0.129 7.129 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.028 0.972 39 H 0.073 0.927 40 H 0.254 0.746 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.043 -3.199 25.746 27.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.131 0.869 4 C 0.304 3.696 5 O -0.410 6.410 6 N -0.365 5.365 7 C 0.047 3.953 8 H 0.105 0.895 9 C -0.215 4.215 10 C -0.166 4.166 11 C 0.050 3.950 12 N -0.338 5.338 13 C -0.351 4.351 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.741 3.259 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.001 4.001 22 C -0.140 4.140 23 C 0.144 3.856 24 F -0.099 7.099 25 C -0.188 4.188 26 C -0.080 4.080 27 C -0.188 4.188 28 C 0.115 3.885 29 F -0.108 7.108 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.440 -3.809 25.411 27.045 hybrid contribution 0.240 1.074 -1.043 1.516 sum -8.199 -2.736 24.368 25.856 Atomic orbital electron populations 1.21858 0.91413 1.03858 1.03234 1.20195 0.98279 1.00864 0.90232 0.86899 1.20168 0.80364 0.84630 0.84410 1.90708 1.37627 1.26046 1.86589 1.46058 1.53286 1.31785 1.05391 1.21113 0.98405 0.92556 0.83235 0.89544 1.22097 0.99488 0.98199 1.01699 1.23836 0.99919 0.96981 0.95894 1.22224 0.92065 0.87412 0.93277 1.46050 1.73441 1.09580 1.04770 1.19030 1.33865 0.94692 0.87515 0.90329 1.24778 1.02010 0.96271 0.97380 1.69820 1.54652 1.12066 1.20249 0.86123 0.78106 0.79720 0.81944 1.21697 1.21579 1.20593 1.22528 0.93810 0.95699 0.88040 1.19367 1.02663 0.94251 0.97700 1.17073 0.91801 0.89059 0.87683 1.91519 1.71088 1.80346 1.66972 1.21205 1.01504 1.01590 0.94479 1.20825 0.95375 0.93183 0.98649 1.21139 1.03801 0.96059 0.97769 1.17166 0.97065 0.79134 0.95094 1.91519 1.90703 1.33838 1.94716 0.91274 0.90985 0.91089 0.76804 0.92761 0.91224 0.92798 0.89335 0.95428 0.90860 0.93643 0.94129 0.95095 0.84053 0.83988 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.87 37.16 0.33 -0.92 16 2 C -0.07 -0.81 2.79 -92.93 -0.26 -1.07 16 3 H 0.11 1.12 7.13 -51.93 -0.37 0.75 16 4 C 0.52 7.35 6.57 -10.98 -0.07 7.28 16 5 O -0.53 -9.51 14.25 5.56 0.08 -9.43 16 6 N -0.72 -9.44 4.84 -53.80 -0.26 -9.70 16 7 C 0.15 2.38 2.29 -67.93 -0.16 2.23 16 8 H 0.09 1.59 7.49 -51.93 -0.39 1.20 16 9 C -0.16 -2.27 9.43 37.16 0.35 -1.92 16 10 C -0.15 -2.64 3.35 -89.69 -0.30 -2.95 16 11 C 0.18 4.13 7.03 -2.84 -0.02 4.11 16 12 N -0.61 -15.92 3.70 -177.72 -0.66 -16.58 16 13 C -0.22 -6.37 10.69 -15.06 -0.16 -6.53 16 14 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 15 C -0.01 -0.23 5.50 -17.44 -0.10 -0.32 16 16 N -0.92 -27.58 11.43 55.49 0.63 -26.94 16 17 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.13 2.57 8.38 -2.96 -0.02 2.55 16 22 C -0.14 -1.57 4.40 -104.49 -0.46 -2.03 16 23 C 0.16 1.87 6.14 -39.43 -0.24 1.63 16 24 F -0.12 -1.56 13.82 2.25 0.03 -1.53 16 25 C -0.17 -1.48 10.03 -39.50 -0.40 -1.88 16 26 C -0.06 -0.44 10.04 -39.60 -0.40 -0.84 16 27 C -0.17 -1.37 10.03 -39.51 -0.40 -1.76 16 28 C 0.13 1.41 7.25 -39.43 -0.29 1.13 16 29 F -0.13 -1.42 16.19 2.25 0.04 -1.38 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.51 7.57 -51.93 -0.39 0.12 16 32 H 0.07 0.68 6.29 -51.93 -0.33 0.35 16 33 H 0.40 4.25 8.02 -40.82 -0.33 3.93 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.07 1.88 7.20 -51.93 -0.37 1.51 16 40 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 45 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -34.17 376.88 -8.44 -42.61 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.37 Total: 1.24 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.59 Total: -1.30 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.28 Total: -53.22 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.07 Total: -2.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.17 -8.44 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282724207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.493 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds