Wall clock time and date at job start Tue Mar 31 2020 21:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47319 * 2 1 4 4 C 1.50698 * 109.47258 * 239.99893 * 2 1 3 5 5 O 1.21278 * 120.00562 * 239.99956 * 4 2 1 6 6 N 1.34783 * 119.99820 * 59.99866 * 4 2 1 7 7 C 1.46503 * 119.99972 * 179.97438 * 6 4 2 8 8 H 1.08996 * 109.47040 * 325.00683 * 7 6 4 9 9 C 1.52998 * 109.46594 * 85.00387 * 7 6 4 10 10 C 1.53005 * 109.47080 * 205.00007 * 7 6 4 11 11 C 1.53947 * 113.73702 * 162.20017 * 10 7 6 12 12 N 1.47815 * 86.03305 * 222.08452 * 11 10 7 13 13 C 1.36943 * 134.45601 * 204.64129 * 12 11 10 14 14 H 1.07993 * 119.99753 * 182.58513 * 13 12 11 15 15 C 1.38810 * 119.99623 * 2.59220 * 13 12 11 16 16 N 1.31608 * 120.00364 * 353.41188 * 15 13 12 17 17 Si 1.86802 * 119.99595 * 173.41234 * 15 13 12 18 18 H 1.48505 * 109.47274 * 94.97152 * 17 15 13 19 19 H 1.48498 * 109.47201 * 214.97310 * 17 15 13 20 20 H 1.48504 * 109.47245 * 334.97341 * 17 15 13 21 21 C 1.47586 * 91.05178 * 24.55291 * 12 11 10 22 22 C 1.50697 * 109.47147 * 120.00148 * 2 1 3 23 23 C 1.38414 * 120.02660 * 59.72637 * 22 2 1 24 24 F 1.35101 * 120.01161 * 359.97438 * 23 22 2 25 25 C 1.38478 * 119.97513 * 179.70133 * 23 22 2 26 26 C 1.38211 * 120.02356 * 0.59168 * 25 23 22 27 27 C 1.38203 * 120.05194 * 359.68618 * 26 25 23 28 28 C 1.38424 * 120.02671 * 240.00072 * 22 2 1 29 29 F 1.35101 * 120.00763 * 359.97438 * 28 22 2 30 30 H 1.09001 * 109.46937 * 299.99566 * 1 2 3 31 31 H 1.09004 * 109.47228 * 60.00162 * 1 2 3 32 32 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00123 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47169 * 64.48626 * 9 7 6 35 35 H 1.09008 * 109.46820 * 184.48024 * 9 7 6 36 36 H 1.08999 * 109.47555 * 304.48221 * 9 7 6 37 37 H 1.08996 * 112.94407 * 293.79144 * 10 7 6 38 38 H 1.08991 * 113.77019 * 336.35181 * 11 10 7 39 39 H 1.08996 * 113.76471 * 107.75091 * 11 10 7 40 40 H 0.96999 * 120.00227 * 180.02562 * 16 15 13 41 41 H 1.08999 * 113.76332 * 221.14895 * 21 12 11 42 42 H 1.08994 * 113.87276 * 89.76549 * 21 12 11 43 43 H 1.08001 * 119.98845 * 180.27381 * 25 23 22 44 44 H 1.07999 * 119.97362 * 179.69915 * 26 25 23 45 45 H 1.07998 * 119.98963 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9402 -3.6508 8 1 3.1948 -1.3321 -3.4612 9 6 1.2519 -2.0944 -3.9948 10 6 2.2467 0.0431 -4.8219 11 6 3.1310 -0.4299 -5.9899 12 7 3.6162 0.9650 -6.0527 13 6 4.1650 1.7463 -7.0343 14 1 4.4822 2.7536 -6.8085 15 6 4.3133 1.2436 -8.3196 16 7 4.0486 -0.0219 -8.5660 17 14 4.8888 2.3632 -9.6998 18 1 6.3595 2.2350 -9.8606 19 1 4.2166 1.9744 -10.9655 20 1 4.5477 3.7705 -9.3703 21 6 3.2698 1.1779 -4.6339 22 6 2.0323 -0.7104 1.2304 23 6 1.6936 -2.0339 1.4528 24 9 0.9119 -2.6894 0.5671 25 6 2.1609 -2.6875 2.5807 26 6 2.9551 -2.0152 3.4903 27 6 3.2892 -0.6921 3.2722 28 6 2.8282 -0.0382 2.1420 29 9 3.1554 1.2551 1.9286 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1493 0.5389 -2.5436 34 1 0.2730 -1.6961 -4.2618 35 1 1.6572 -2.6566 -4.8362 36 1 1.1533 -2.7527 -3.1317 37 1 1.2600 0.3883 -5.1303 38 1 3.8966 -1.1487 -5.6983 39 1 2.5675 -0.7402 -6.8698 40 1 4.1526 -0.3732 -9.4641 41 1 2.8170 2.1489 -4.4333 42 1 4.0753 0.9331 -3.9417 43 1 1.9004 -3.7215 2.7522 44 1 3.3151 -2.5244 4.3721 45 1 3.9096 -0.1676 3.9839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282724207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:44 Heat of formation + Delta-G solvation = -71.857891 kcal Electronic energy + Delta-G solvation = -29597.366860 eV Core-core repulsion = 25251.679478 eV Total energy + Delta-G solvation = -4345.687382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.05153 -49.97154 -41.31297 -40.02659 -39.31972 -36.20811 -35.40362 -34.13488 -31.92074 -31.23211 -30.28316 -29.33749 -26.66293 -25.97733 -25.58235 -23.91067 -23.74015 -22.42306 -21.33182 -20.57384 -19.12873 -18.81295 -18.69863 -17.80551 -17.45452 -16.91469 -16.83057 -16.61477 -16.55432 -16.29054 -16.07821 -15.81965 -15.47149 -15.35776 -14.97282 -14.90490 -14.58452 -14.10303 -13.76369 -13.70900 -13.33659 -13.24500 -13.23809 -13.11288 -13.06972 -13.00251 -12.86635 -12.68856 -12.48555 -12.36221 -12.06009 -11.94366 -11.79714 -11.57662 -11.26221 -10.83724 -10.79788 -10.05024 -9.86972 -9.69678 -8.95162 -7.92802 -5.25529 -0.02270 0.03340 1.44529 1.46267 1.55845 1.63053 2.09420 2.45709 2.47185 2.93395 3.27103 3.28300 3.36150 3.44105 3.56696 3.70835 3.89136 3.94014 3.97200 4.08970 4.23632 4.26017 4.27452 4.43722 4.55471 4.69005 4.74857 4.76624 4.82094 4.84175 4.87098 4.90877 4.94225 5.04717 5.07404 5.10358 5.20914 5.22782 5.22844 5.28345 5.50930 5.54243 5.63227 5.81220 5.91640 6.57594 6.90106 7.26039 7.58947 8.54851 9.24776 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021438 B = 0.002474 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.752835 B =11314.488356 C =11907.550008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 H 0.123 0.877 4 C 0.517 3.483 5 O -0.574 6.574 6 N -0.705 5.705 7 C 0.164 3.836 8 H 0.057 0.943 9 C -0.149 4.149 10 C -0.107 4.107 11 C 0.171 3.829 12 N -0.643 5.643 13 C -0.238 4.238 14 H 0.083 0.917 15 C -0.067 4.067 16 N -0.954 5.954 17 Si 0.980 3.020 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.266 1.266 21 C 0.127 3.873 22 C -0.157 4.157 23 C 0.134 3.866 24 F -0.137 7.137 25 C -0.171 4.171 26 C -0.052 4.052 27 C -0.164 4.164 28 C 0.115 3.885 29 F -0.137 7.137 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.414 0.586 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.009 0.991 39 H 0.046 0.954 40 H 0.249 0.751 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.159 0.841 44 H 0.182 0.818 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 -2.023 27.845 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.090 4.090 3 H 0.141 0.859 4 C 0.304 3.696 5 O -0.453 6.453 6 N -0.356 5.356 7 C 0.058 3.942 8 H 0.075 0.925 9 C -0.207 4.207 10 C -0.127 4.127 11 C 0.045 3.955 12 N -0.370 5.370 13 C -0.367 4.367 14 H 0.101 0.899 15 C -0.260 4.260 16 N -0.602 5.602 17 Si 0.808 3.192 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.190 1.190 21 C 0.002 3.998 22 C -0.159 4.159 23 C 0.114 3.886 24 F -0.116 7.116 25 C -0.189 4.189 26 C -0.069 4.069 27 C -0.182 4.182 28 C 0.095 3.905 29 F -0.115 7.115 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.027 0.973 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.177 0.823 44 H 0.199 0.801 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.251 -2.593 27.550 29.177 hybrid contribution 0.547 0.674 -1.581 1.804 sum -8.704 -1.919 25.969 27.456 Atomic orbital electron populations 1.21862 0.89521 1.03583 1.04867 1.20208 0.99774 1.00632 0.88429 0.85904 1.20769 0.79456 0.84150 0.85234 1.90687 1.39423 1.27966 1.87180 1.45860 1.53209 1.32116 1.04444 1.20724 0.97645 0.92410 0.83385 0.92487 1.22017 1.00018 0.97496 1.01204 1.23438 0.99295 0.95678 0.94292 1.22126 0.92463 0.86458 0.94446 1.46494 1.73353 1.10412 1.06719 1.19448 1.33350 0.95293 0.88560 0.89915 1.25656 1.02851 0.97719 0.99816 1.70011 1.56119 1.13767 1.20333 0.85050 0.77233 0.78473 0.78482 1.21680 1.21771 1.19011 1.22666 0.94230 0.97643 0.85236 1.19505 1.03584 0.94652 0.98204 1.17445 0.92965 0.89532 0.88636 1.91469 1.71714 1.80646 1.67749 1.21562 1.01063 1.02528 0.93779 1.21291 0.93796 0.92715 0.99126 1.21535 1.03056 0.96517 0.97133 1.17435 0.97807 0.79124 0.96117 1.91494 1.90848 1.34308 1.94883 0.89647 0.89338 0.92278 0.74933 0.90646 0.92044 0.93150 0.87415 0.97345 0.93557 0.94182 0.91828 0.95364 0.82287 0.80104 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.87 71.98 0.64 -1.54 16 2 C -0.07 -1.45 2.79 -12.29 -0.03 -1.49 16 3 H 0.12 2.28 7.13 -2.38 -0.02 2.27 16 4 C 0.52 14.44 6.57 87.66 0.58 15.02 16 5 O -0.57 -20.84 14.25 -3.02 -0.04 -20.89 16 6 N -0.70 -17.81 4.84 -442.52 -2.14 -19.95 16 7 C 0.16 5.12 2.29 44.99 0.10 5.22 16 8 H 0.06 2.16 7.49 -2.39 -0.02 2.15 16 9 C -0.15 -4.25 9.43 71.98 0.68 -3.57 16 10 C -0.11 -3.81 3.35 -10.13 -0.03 -3.84 16 11 C 0.17 8.26 7.03 86.44 0.61 8.87 16 12 N -0.64 -33.75 3.70 -716.17 -2.65 -36.40 16 13 C -0.24 -13.67 10.69 84.03 0.90 -12.77 16 14 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 15 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 16 N -0.95 -58.59 11.43 21.65 0.25 -58.34 16 17 Si 0.98 46.34 29.56 68.60 2.03 48.36 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 C 0.13 5.11 8.38 86.48 0.73 5.84 16 22 C -0.16 -3.50 4.40 -19.78 -0.09 -3.59 16 23 C 0.13 3.00 6.14 22.37 0.14 3.14 16 24 F -0.14 -3.59 13.82 44.97 0.62 -2.97 16 25 C -0.17 -2.71 10.03 22.32 0.22 -2.49 16 26 C -0.05 -0.58 10.04 22.25 0.22 -0.35 16 27 C -0.16 -2.26 10.03 22.32 0.22 -2.03 16 28 C 0.11 2.27 7.25 22.37 0.16 2.43 16 29 F -0.14 -2.86 16.19 44.97 0.73 -2.14 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.04 7.57 -2.38 -0.02 1.02 16 32 H 0.06 1.08 6.29 -2.39 -0.02 1.06 16 33 H 0.41 7.86 8.02 -92.71 -0.74 7.12 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.01 0.45 8.04 -2.39 -0.02 0.43 16 39 H 0.05 2.47 7.20 -2.39 -0.02 2.45 16 40 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.03 1.18 8.10 -2.39 -0.02 1.16 16 43 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 45 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -76.70 376.88 4.57 -72.13 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.27 Total: 14.81 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.51 Total: 5.39 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.55 Total: -114.69 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.04 Total: -20.89 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 1.35 Total: -5.11 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -76.70 4.57 -72.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282724207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.272 kcal (2) G-P(sol) polarization free energy of solvation -76.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds