Wall clock time and date at job start Tue Mar 31 2020 20:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70048 * 2 1 4 4 C 1.53194 * 109.58325 * 120.35280 * 2 1 3 5 5 H 1.08998 * 109.49797 * 54.44172 * 4 2 1 6 6 N 1.46496 * 109.49968 * 294.37588 * 4 2 1 7 7 C 1.34773 * 120.00011 * 155.06713 * 6 4 2 8 8 O 1.21281 * 120.00206 * 0.02562 * 7 6 4 9 9 C 1.50707 * 119.99968 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47010 * 180.02562 * 9 7 6 11 11 O 1.42903 * 109.46754 * 179.97438 * 10 9 7 12 12 C 1.42908 * 113.99875 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47084 * 179.97438 * 12 11 10 14 14 F 1.39907 * 109.46859 * 60.00298 * 13 12 11 15 15 F 1.39899 * 109.47048 * 180.02562 * 13 12 11 16 16 F 1.39899 * 109.47369 * 300.00476 * 13 12 11 17 17 C 1.53041 * 109.33707 * 174.40863 * 4 2 1 18 18 C 1.53046 * 109.53942 * 298.64777 * 17 4 2 19 19 C 1.53193 * 109.30663 * 61.36893 * 18 17 4 20 20 N 1.46926 * 108.77401 * 305.36121 * 19 18 17 21 21 C 1.36941 * 120.63239 * 233.61150 * 20 19 18 22 22 H 1.07998 * 120.00005 * 151.57331 * 21 20 19 23 23 C 1.38816 * 119.99945 * 331.57425 * 21 20 19 24 24 N 1.31619 * 120.00031 * 160.51844 * 23 21 20 25 25 Si 1.86800 * 119.99895 * 340.52223 * 23 21 20 26 26 H 1.48500 * 109.47611 * 94.86020 * 25 23 21 27 27 H 1.48506 * 109.46811 * 214.85760 * 25 23 21 28 28 H 1.48498 * 109.47407 * 334.85455 * 25 23 21 29 29 H 1.08997 * 109.47454 * 299.64842 * 1 2 3 30 30 H 1.09001 * 109.47042 * 59.65168 * 1 2 3 31 31 H 1.09003 * 109.46996 * 179.64142 * 1 2 3 32 32 H 0.97002 * 119.99754 * 335.06467 * 6 4 2 33 33 H 1.09001 * 109.46906 * 59.99688 * 9 7 6 34 34 H 1.09000 * 109.46792 * 299.99678 * 9 7 6 35 35 H 1.09001 * 109.47570 * 60.00059 * 10 9 7 36 36 H 1.09000 * 109.47051 * 299.99483 * 10 9 7 37 37 H 1.09005 * 109.46664 * 60.00042 * 12 11 10 38 38 H 1.09000 * 109.47022 * 300.00384 * 12 11 10 39 39 H 1.09000 * 109.46344 * 58.66896 * 17 4 2 40 40 H 1.09006 * 109.45966 * 178.64441 * 17 4 2 41 41 H 1.08996 * 109.49862 * 181.31599 * 18 17 4 42 42 H 1.08991 * 109.49551 * 301.41804 * 18 17 4 43 43 H 1.08993 * 109.59467 * 65.15416 * 19 18 17 44 44 H 1.09009 * 109.58330 * 185.57849 * 19 18 17 45 45 H 0.96994 * 120.00253 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 1 1.6025 -1.7251 1.2917 6 7 1.6704 0.0267 2.4435 7 6 1.5483 -0.6046 3.6279 8 8 1.7478 -1.7986 3.7021 9 6 1.1640 0.1731 4.8603 10 6 1.0961 -0.7736 6.0602 11 8 0.7322 -0.0360 7.2289 12 6 0.6397 -0.8312 8.4127 13 6 0.2468 0.0575 9.5945 14 9 -0.9913 0.6558 9.3367 15 9 0.1568 -0.7208 10.7535 16 9 1.2161 1.0502 9.7740 17 6 3.5674 -0.8486 1.1707 18 6 3.9569 -1.6665 -0.0629 19 6 3.4658 -0.9472 -1.3232 20 7 2.0234 -0.6993 -1.1944 21 6 1.1546 -1.1123 -2.1690 22 1 0.1341 -1.3573 -1.9142 23 6 1.5857 -1.2162 -3.4844 24 7 0.9123 -1.9541 -4.3413 25 14 3.1215 -0.3086 -4.0384 26 1 4.2922 -1.2183 -3.9526 27 1 2.9492 0.1452 -5.4419 28 1 3.3442 0.8688 -3.1613 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5192 -0.8869 31 1 -0.3633 -1.0277 -0.0064 32 1 1.5113 0.9818 2.3843 33 1 0.1897 0.6375 4.7077 34 1 1.9092 0.9458 5.0493 35 1 2.0705 -1.2376 6.2127 36 1 0.3511 -1.5466 5.8715 37 1 1.6044 -1.2970 8.6137 38 1 -0.1152 -1.6049 8.2726 39 1 4.0065 0.1465 1.1001 40 1 3.9372 -1.3459 2.0674 41 1 5.0411 -1.7708 -0.1027 42 1 3.4978 -2.6533 -0.0049 43 1 3.9915 0.0014 -1.4309 44 1 3.6526 -1.5721 -2.1967 45 1 1.2136 -2.0270 -5.2604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284131524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:00 Heat of formation + Delta-G solvation = -218.624583 kcal Electronic energy + Delta-G solvation = -29717.596887 eV Core-core repulsion = 24934.775999 eV Total energy + Delta-G solvation = -4782.820888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.50371 -48.06684 -47.95496 -40.08038 -38.68207 -37.88090 -34.53586 -32.90085 -32.48437 -31.71327 -30.22168 -29.38521 -26.51619 -25.01739 -24.25385 -23.71191 -22.28097 -20.92931 -20.30776 -19.58243 -19.06675 -19.04214 -18.18690 -17.42800 -16.75580 -16.55738 -16.12972 -15.97075 -15.33032 -15.18667 -14.87896 -14.76773 -14.49937 -14.42309 -14.21009 -14.14018 -14.13128 -13.90632 -13.68643 -13.58695 -13.41684 -13.11794 -12.46367 -12.20033 -12.01321 -11.91623 -11.84371 -11.77420 -11.40448 -11.33742 -10.95405 -10.71759 -10.49979 -10.39795 -10.34260 -10.01829 -9.90758 -9.58504 -9.47348 -8.88539 -8.64918 -7.02380 -5.97344 -3.36069 1.96767 2.61512 2.71540 3.27050 3.29989 3.44298 3.45894 3.47794 3.53994 4.04297 4.43720 4.49827 4.52120 4.53484 4.67580 4.81256 4.91037 5.10566 5.19889 5.30702 5.36197 5.40470 5.45124 5.50762 5.66882 5.83433 5.96213 6.14051 6.18074 6.24185 6.32394 6.36188 6.41303 6.45021 6.54487 6.65498 6.75089 6.90707 6.99079 7.55287 7.91507 8.22904 8.31585 8.88899 9.68308 10.03709 11.17892 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.033038 B = 0.001914 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.303217 B =14627.966993 C =14919.546889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.171 3.829 3 H 0.033 0.967 4 C 0.129 3.871 5 H 0.091 0.909 6 N -0.716 5.716 7 C 0.517 3.483 8 O -0.544 6.544 9 C -0.141 4.141 10 C 0.080 3.920 11 O -0.377 6.377 12 C 0.020 3.980 13 C 0.462 3.538 14 F -0.176 7.176 15 F -0.177 7.177 16 F -0.176 7.176 17 C -0.118 4.118 18 C -0.133 4.133 19 C 0.124 3.876 20 N -0.597 5.597 21 C -0.262 4.262 22 H 0.092 0.908 23 C 0.025 3.975 24 N -0.907 5.907 25 Si 0.882 3.118 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.399 0.601 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.073 0.927 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.076 5.296 25.580 26.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.050 0.950 4 C 0.023 3.977 5 H 0.109 0.891 6 N -0.366 5.366 7 C 0.302 3.698 8 O -0.422 6.422 9 C -0.181 4.181 10 C 0.004 3.996 11 O -0.296 6.296 12 C -0.058 4.058 13 C 0.407 3.593 14 F -0.157 7.157 15 F -0.159 7.159 16 F -0.158 7.158 17 C -0.157 4.157 18 C -0.172 4.172 19 C -0.002 4.002 20 N -0.321 5.321 21 C -0.390 4.390 22 H 0.110 0.890 23 C -0.174 4.174 24 N -0.550 5.550 25 Si 0.713 3.287 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.195 1.195 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.091 0.909 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.124 4.595 25.438 25.874 hybrid contribution 0.872 0.822 -0.286 1.232 sum 1.996 5.418 25.152 25.806 Atomic orbital electron populations 1.21828 0.94815 1.02318 1.00488 1.20573 0.93955 0.93346 0.85766 0.94972 1.21778 0.94933 0.97205 0.83735 0.89099 1.46071 1.69955 1.12333 1.08279 1.20211 0.77174 0.87897 0.84493 1.90726 1.50570 1.15092 1.85806 1.21478 1.05244 0.99553 0.91835 1.22284 1.01058 0.93643 0.82647 1.87822 1.91150 1.34848 1.15819 1.23485 1.04914 0.92864 0.84563 1.20196 0.75284 0.79836 0.83959 1.93226 1.43704 1.84854 1.93913 1.93214 1.96107 1.74815 1.51757 1.93221 1.63030 1.63660 1.95847 1.21771 0.95591 1.00039 0.98269 1.22003 0.99571 1.00066 0.95605 1.21404 0.85049 0.97172 0.96543 1.44344 1.02170 1.65865 1.19765 1.18910 0.95473 1.38793 0.85782 0.89009 1.25287 0.97635 0.98682 0.95796 1.69817 1.41207 1.39054 1.04937 0.86951 0.83441 0.81248 0.77067 1.21697 1.23226 1.19486 0.94051 0.91442 0.92205 0.76750 0.87740 0.87882 0.91520 0.91398 0.88418 0.88350 0.92586 0.92579 0.92489 0.91479 0.95537 0.90863 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.83 37.16 0.29 -2.07 16 2 C 0.17 3.09 3.03 -67.60 -0.21 2.88 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.07 1.99 -67.81 -0.14 1.93 16 5 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 6 N -0.72 -8.68 4.57 -53.69 -0.25 -8.92 16 7 C 0.52 6.31 7.80 -10.98 -0.09 6.22 16 8 O -0.54 -8.79 15.65 5.56 0.09 -8.70 16 9 C -0.14 -1.17 6.07 -27.88 -0.17 -1.34 16 10 C 0.08 0.67 5.23 37.16 0.19 0.87 16 11 O -0.38 -3.17 10.23 -35.23 -0.36 -3.54 16 12 C 0.02 0.12 5.90 37.15 0.22 0.34 16 13 C 0.46 3.48 3.32 37.15 0.12 3.60 16 14 F -0.18 -1.59 17.26 2.25 0.04 -1.55 16 15 F -0.18 -1.31 17.32 2.25 0.04 -1.27 16 16 F -0.18 -1.57 17.26 2.25 0.04 -1.53 16 17 C -0.12 -1.85 5.46 -26.69 -0.15 -2.00 16 18 C -0.13 -2.33 6.08 -26.61 -0.16 -2.50 16 19 C 0.12 2.60 4.19 -3.71 -0.02 2.59 16 20 N -0.60 -13.43 2.76 -164.77 -0.45 -13.89 16 21 C -0.26 -6.95 9.07 -15.06 -0.14 -7.08 16 22 H 0.09 2.58 6.36 -52.49 -0.33 2.25 16 23 C 0.03 0.70 5.24 -17.43 -0.09 0.61 16 24 N -0.91 -27.22 13.97 55.49 0.78 -26.44 16 25 Si 0.88 21.81 24.35 -169.99 -4.14 17.67 16 26 H -0.29 -6.97 6.72 56.52 0.38 -6.59 16 27 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 28 H -0.27 -6.49 6.44 56.52 0.36 -6.12 16 29 H 0.04 0.56 7.78 -51.93 -0.40 0.16 16 30 H 0.07 1.26 7.65 -51.93 -0.40 0.86 16 31 H 0.06 1.13 7.41 -51.93 -0.38 0.75 16 32 H 0.40 3.72 8.60 -40.82 -0.35 3.36 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 37 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.03 0.55 6.95 -51.93 -0.36 0.19 16 44 H 0.07 1.70 4.61 -51.92 -0.24 1.46 16 45 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -32.16 369.58 -5.68 -37.84 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.71 Total: 0.71 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.32 Total: 4.05 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: 0.07 Total: -49.25 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.27 Total: -12.23 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.12 Total: -4.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.16 -5.68 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284131524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.789 kcal (2) G-P(sol) polarization free energy of solvation -32.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds