Wall clock time and date at job start Tue Mar 31 2020 20:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.70048 * 2 1 4 4 C 1.53194 * 109.58325 * 120.35280 * 2 1 3 5 5 H 1.08998 * 109.49797 * 54.44172 * 4 2 1 6 6 N 1.46496 * 109.49968 * 294.37588 * 4 2 1 7 7 C 1.34773 * 120.00011 * 155.06713 * 6 4 2 8 8 O 1.21281 * 120.00206 * 0.02562 * 7 6 4 9 9 C 1.50707 * 119.99968 * 180.02562 * 7 6 4 10 10 C 1.52997 * 109.47010 * 180.02562 * 9 7 6 11 11 O 1.42903 * 109.46754 * 179.97438 * 10 9 7 12 12 C 1.42908 * 113.99875 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47084 * 179.97438 * 12 11 10 14 14 F 1.39907 * 109.46859 * 60.00298 * 13 12 11 15 15 F 1.39899 * 109.47048 * 180.02562 * 13 12 11 16 16 F 1.39899 * 109.47369 * 300.00476 * 13 12 11 17 17 C 1.53041 * 109.33707 * 174.40863 * 4 2 1 18 18 C 1.53046 * 109.53942 * 298.64777 * 17 4 2 19 19 C 1.53193 * 109.30663 * 61.36893 * 18 17 4 20 20 N 1.46926 * 108.77401 * 305.36121 * 19 18 17 21 21 C 1.36941 * 120.63239 * 233.61150 * 20 19 18 22 22 H 1.07998 * 120.00005 * 151.57331 * 21 20 19 23 23 C 1.38816 * 119.99945 * 331.57425 * 21 20 19 24 24 N 1.31619 * 120.00031 * 160.51844 * 23 21 20 25 25 Si 1.86800 * 119.99895 * 340.52223 * 23 21 20 26 26 H 1.48500 * 109.47611 * 94.86020 * 25 23 21 27 27 H 1.48506 * 109.46811 * 214.85760 * 25 23 21 28 28 H 1.48498 * 109.47407 * 334.85455 * 25 23 21 29 29 H 1.08997 * 109.47454 * 299.64842 * 1 2 3 30 30 H 1.09001 * 109.47042 * 59.65168 * 1 2 3 31 31 H 1.09003 * 109.46996 * 179.64142 * 1 2 3 32 32 H 0.97002 * 119.99754 * 335.06467 * 6 4 2 33 33 H 1.09001 * 109.46906 * 59.99688 * 9 7 6 34 34 H 1.09000 * 109.46792 * 299.99678 * 9 7 6 35 35 H 1.09001 * 109.47570 * 60.00059 * 10 9 7 36 36 H 1.09000 * 109.47051 * 299.99483 * 10 9 7 37 37 H 1.09005 * 109.46664 * 60.00042 * 12 11 10 38 38 H 1.09000 * 109.47022 * 300.00384 * 12 11 10 39 39 H 1.09000 * 109.46344 * 58.66896 * 17 4 2 40 40 H 1.09006 * 109.45966 * 178.64441 * 17 4 2 41 41 H 1.08996 * 109.49862 * 181.31599 * 18 17 4 42 42 H 1.08991 * 109.49551 * 301.41804 * 18 17 4 43 43 H 1.08993 * 109.59467 * 65.15416 * 19 18 17 44 44 H 1.09009 * 109.58330 * 185.57849 * 19 18 17 45 45 H 0.96994 * 120.00253 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 1 1.6025 -1.7251 1.2917 6 7 1.6704 0.0267 2.4435 7 6 1.5483 -0.6046 3.6279 8 8 1.7478 -1.7986 3.7021 9 6 1.1640 0.1731 4.8603 10 6 1.0961 -0.7736 6.0602 11 8 0.7322 -0.0360 7.2289 12 6 0.6397 -0.8312 8.4127 13 6 0.2468 0.0575 9.5945 14 9 -0.9913 0.6558 9.3367 15 9 0.1568 -0.7208 10.7535 16 9 1.2161 1.0502 9.7740 17 6 3.5674 -0.8486 1.1707 18 6 3.9569 -1.6665 -0.0629 19 6 3.4658 -0.9472 -1.3232 20 7 2.0234 -0.6993 -1.1944 21 6 1.1546 -1.1123 -2.1690 22 1 0.1341 -1.3573 -1.9142 23 6 1.5857 -1.2162 -3.4844 24 7 0.9123 -1.9541 -4.3413 25 14 3.1215 -0.3086 -4.0384 26 1 4.2922 -1.2183 -3.9526 27 1 2.9492 0.1452 -5.4419 28 1 3.3442 0.8688 -3.1613 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5192 -0.8869 31 1 -0.3633 -1.0277 -0.0064 32 1 1.5113 0.9818 2.3843 33 1 0.1897 0.6375 4.7077 34 1 1.9092 0.9458 5.0493 35 1 2.0705 -1.2376 6.2127 36 1 0.3511 -1.5466 5.8715 37 1 1.6044 -1.2970 8.6137 38 1 -0.1152 -1.6049 8.2726 39 1 4.0065 0.1465 1.1001 40 1 3.9372 -1.3459 2.0674 41 1 5.0411 -1.7708 -0.1027 42 1 3.4978 -2.6533 -0.0049 43 1 3.9915 0.0014 -1.4309 44 1 3.6526 -1.5721 -2.1967 45 1 1.2136 -2.0270 -5.2604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284131524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:59 Heat of formation + Delta-G solvation = -241.209659 kcal Electronic energy + Delta-G solvation = -29718.576250 eV Core-core repulsion = 24934.775999 eV Total energy + Delta-G solvation = -4783.800251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.10904 -48.66347 -48.59413 -41.17024 -39.63803 -38.95586 -35.94531 -34.43006 -33.54565 -33.19095 -31.54171 -30.14949 -27.97919 -26.73388 -25.29002 -24.26849 -23.62557 -22.39429 -21.42030 -21.01181 -19.66888 -19.64143 -18.83857 -18.45262 -18.13650 -17.47730 -17.36903 -16.90808 -16.81206 -16.13682 -16.09880 -15.49725 -15.46766 -15.26763 -15.12667 -15.04359 -15.00383 -14.91625 -14.77189 -14.76001 -14.61199 -14.26001 -14.00465 -13.64824 -13.48196 -12.95213 -12.90863 -12.74207 -12.54694 -12.47330 -12.44378 -12.35850 -12.03308 -11.87690 -11.63233 -11.44067 -11.29518 -10.95388 -10.90892 -10.65777 -10.00479 -8.90095 -8.11600 -5.45698 1.33225 1.39565 1.43602 1.52382 1.67037 2.00263 2.45418 2.48414 2.85061 3.00434 3.09251 3.32405 3.47113 3.72717 3.87334 3.94853 4.04776 4.07690 4.11938 4.13741 4.21243 4.23819 4.40614 4.51649 4.52391 4.66753 4.72686 4.78807 4.84445 4.88758 4.92047 5.03522 5.04157 5.16964 5.25342 5.37918 5.46455 5.61575 5.76393 5.91565 6.20482 6.61591 6.93545 7.30883 7.65808 8.04131 9.07583 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.033038 B = 0.001914 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.303217 B =14627.966993 C =14919.546889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.166 3.834 3 H 0.058 0.942 4 C 0.143 3.857 5 H 0.054 0.946 6 N -0.706 5.706 7 C 0.517 3.483 8 O -0.586 6.586 9 C -0.130 4.130 10 C 0.081 3.919 11 O -0.389 6.389 12 C 0.018 3.982 13 C 0.461 3.539 14 F -0.186 7.186 15 F -0.177 7.177 16 F -0.186 7.186 17 C -0.111 4.111 18 C -0.127 4.127 19 C 0.117 3.883 20 N -0.613 5.613 21 C -0.239 4.239 22 H 0.062 0.938 23 C -0.039 4.039 24 N -0.960 5.960 25 Si 0.945 3.055 26 H -0.281 1.281 27 H -0.316 1.316 28 H -0.252 1.252 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.031 0.969 32 H 0.417 0.583 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.047 0.953 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 7.315 27.981 29.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.060 3.940 3 H 0.075 0.925 4 C 0.037 3.963 5 H 0.073 0.927 6 N -0.358 5.358 7 C 0.305 3.695 8 O -0.467 6.467 9 C -0.170 4.170 10 C 0.005 3.995 11 O -0.308 6.308 12 C -0.060 4.060 13 C 0.407 3.593 14 F -0.168 7.168 15 F -0.159 7.159 16 F -0.167 7.167 17 C -0.149 4.149 18 C -0.166 4.166 19 C -0.007 4.007 20 N -0.338 5.338 21 C -0.369 4.369 22 H 0.080 0.920 23 C -0.233 4.233 24 N -0.607 5.607 25 Si 0.775 3.225 26 H -0.208 1.208 27 H -0.246 1.246 28 H -0.176 1.176 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.254 0.746 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.690 6.669 27.907 28.818 hybrid contribution 0.307 0.157 -0.884 0.949 sum 2.996 6.826 27.022 28.032 Atomic orbital electron populations 1.21750 0.94626 1.00780 1.01555 1.20812 0.94242 0.94167 0.84744 0.92478 1.21267 0.95135 0.95578 0.84370 0.92731 1.45852 1.69814 1.13004 1.07100 1.20858 0.75880 0.87500 0.85244 1.90720 1.52311 1.17229 1.86424 1.21428 1.06825 0.99261 0.89489 1.22216 1.00863 0.93538 0.82870 1.87777 1.91285 1.35500 1.16285 1.23675 1.06690 0.92499 0.83139 1.20425 0.74670 0.79714 0.84497 1.93203 1.44451 1.85140 1.93994 1.93213 1.96071 1.74684 1.51895 1.93200 1.63344 1.64229 1.95951 1.21712 0.95047 1.00855 0.97297 1.21914 1.01036 0.98817 0.94878 1.21473 0.84285 0.97710 0.97268 1.44498 1.02480 1.66701 1.20158 1.18846 0.94917 1.36437 0.86675 0.91996 1.25925 1.01172 1.00053 0.96165 1.69960 1.43902 1.41619 1.05197 0.85924 0.80228 0.80462 0.75920 1.20805 1.24553 1.17640 0.89911 0.93404 0.95019 0.74602 0.85884 0.85541 0.91646 0.91997 0.86376 0.86548 0.90348 0.92022 0.89727 0.93609 0.93996 0.93478 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 7.83 71.98 0.56 -3.80 16 2 C 0.17 5.69 3.03 44.97 0.14 5.83 16 3 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.14 4.31 1.99 45.07 0.09 4.40 16 5 H 0.05 2.07 7.58 -2.39 -0.02 2.06 16 6 N -0.71 -14.80 4.57 -442.17 -2.02 -16.82 16 7 C 0.52 11.23 7.80 87.66 0.68 11.91 16 8 O -0.59 -18.14 15.65 -3.03 -0.05 -18.18 16 9 C -0.13 -1.70 6.07 29.85 0.18 -1.52 16 10 C 0.08 1.16 5.23 71.98 0.38 1.54 16 11 O -0.39 -5.51 10.23 -148.98 -1.52 -7.04 16 12 C 0.02 0.18 5.90 71.98 0.42 0.60 16 13 C 0.46 6.19 3.32 71.98 0.24 6.43 16 14 F -0.19 -3.12 17.26 44.97 0.78 -2.34 16 15 F -0.18 -2.35 17.32 44.97 0.78 -1.58 16 16 F -0.19 -3.04 17.26 44.97 0.78 -2.26 16 17 C -0.11 -3.13 5.46 30.62 0.17 -2.97 16 18 C -0.13 -4.21 6.08 30.67 0.19 -4.02 16 19 C 0.12 4.73 4.19 86.36 0.36 5.10 16 20 N -0.61 -27.19 2.76 -675.20 -1.86 -29.05 16 21 C -0.24 -13.01 9.07 84.03 0.76 -12.25 16 22 H 0.06 3.67 6.36 -2.91 -0.02 3.65 16 23 C -0.04 -2.24 5.24 84.86 0.45 -1.79 16 24 N -0.96 -59.98 13.97 21.65 0.30 -59.68 16 25 Si 0.95 45.53 24.35 68.60 1.67 47.20 16 26 H -0.28 -12.99 6.72 99.48 0.67 -12.32 16 27 H -0.32 -15.71 7.11 99.48 0.71 -15.01 16 28 H -0.25 -11.27 6.44 99.48 0.64 -10.63 16 29 H 0.08 2.05 7.78 -2.39 -0.02 2.03 16 30 H 0.05 1.78 7.65 -2.39 -0.02 1.76 16 31 H 0.03 1.22 7.41 -2.39 -0.02 1.20 16 32 H 0.42 5.87 8.60 -92.71 -0.80 5.07 16 33 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 36 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 1.72 8.14 -2.38 -0.02 1.71 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.58 6.95 -2.39 -0.02 1.57 16 44 H 0.05 2.15 4.61 -2.38 -0.01 2.14 16 45 H 0.26 15.49 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -72.78 369.58 3.58 -69.20 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.12 Total: 11.12 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 4.62 Total: 9.44 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -3.58 Total: -105.55 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -1.57 Total: -25.22 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 2.33 Total: -6.18 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.67 Total: 47.20 kcal Total: -72.78 3.58 -69.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284131524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.014 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds