Wall clock time and date at job start Tue Mar 31 2020 21:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47034 * 2 1 4 4 N 1.46501 * 109.47035 * 119.99561 * 2 1 3 5 5 C 1.36932 * 120.00224 * 274.99975 * 4 2 1 6 6 H 1.08003 * 120.00198 * 0.02562 * 5 4 2 7 7 C 1.38814 * 119.99922 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99936 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47330 * 90.00097 * 9 7 5 11 11 H 1.48498 * 109.47273 * 210.00423 * 9 7 5 12 12 H 1.48506 * 109.47225 * 329.99956 * 9 7 5 13 13 C 1.52999 * 109.47512 * 239.99955 * 2 1 3 14 14 C 1.53041 * 109.46309 * 180.02562 * 13 2 1 15 15 C 1.53195 * 109.31186 * 178.59867 * 14 13 2 16 16 N 1.46932 * 108.76360 * 54.65510 * 15 14 13 17 17 C 1.34769 * 120.62781 * 126.36163 * 16 15 14 18 18 O 1.21575 * 119.99847 * 176.23548 * 17 16 15 19 19 C 1.47730 * 120.00238 * 356.22722 * 17 16 15 20 20 C 1.39648 * 120.10710 * 50.86134 * 19 17 16 21 21 C 1.37850 * 119.92630 * 179.97438 * 20 19 17 22 22 C 1.38607 * 120.14735 * 0.02562 * 21 20 19 23 23 F 1.35093 * 119.89417 * 179.97438 * 22 21 20 24 24 C 1.38843 * 120.21955 * 359.97438 * 22 21 20 25 25 F 1.35100 * 119.96448 * 180.02562 * 24 22 21 26 26 C 1.38059 * 120.07151 * 359.78262 * 24 22 21 27 27 C 1.46930 * 118.73738 * 306.38059 * 16 15 14 28 28 C 1.53041 * 109.45877 * 59.96650 * 13 2 1 29 29 H 1.09003 * 109.47034 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47244 * 60.00473 * 1 2 3 31 31 H 1.09001 * 109.47231 * 299.99921 * 1 2 3 32 32 H 0.97001 * 119.99947 * 95.00278 * 4 2 1 33 33 H 0.96995 * 119.99715 * 179.97438 * 8 7 5 34 34 H 1.09008 * 109.45865 * 300.00050 * 13 2 1 35 35 H 1.08995 * 109.49206 * 298.56580 * 14 13 2 36 36 H 1.09001 * 109.49431 * 58.65900 * 14 13 2 37 37 H 1.08998 * 109.59836 * 294.86552 * 15 14 13 38 38 H 1.08995 * 109.69951 * 174.50369 * 15 14 13 39 39 H 1.07995 * 120.03659 * 359.95065 * 20 19 17 40 40 H 1.07995 * 119.92791 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.07674 * 180.25625 * 26 24 22 42 42 H 1.08996 * 109.58776 * 293.82418 * 27 16 15 43 43 H 1.08994 * 109.58196 * 173.39411 * 27 16 15 44 44 H 1.08995 * 109.49929 * 301.34128 * 28 13 2 45 45 H 1.08998 * 109.49212 * 61.40725 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1490 -0.0074 2.3757 6 1 1.8918 1.0405 2.4243 7 6 2.6122 -0.6616 3.5090 8 7 2.9262 -1.9384 3.4498 9 14 2.7900 0.2702 5.1183 10 1 1.5224 0.1779 5.8864 11 1 3.8951 -0.3223 5.9139 12 1 3.0939 1.6957 4.8340 13 6 2.0400 -0.7212 -1.2492 14 6 3.5704 -0.7216 -1.2486 15 6 4.0774 -1.4749 -2.4825 16 7 3.4748 -0.8770 -3.6818 17 6 4.2483 -0.4575 -4.7026 18 8 3.7351 -0.0277 -5.7174 19 6 5.7199 -0.5197 -4.5882 20 6 6.3424 -1.7062 -4.1947 21 6 7.7158 -1.7603 -4.0898 22 6 8.4803 -0.6394 -4.3735 23 9 9.8258 -0.6980 -4.2685 24 6 7.8677 0.5434 -4.7653 25 9 8.6179 1.6326 -5.0411 26 6 6.4932 0.6062 -4.8782 27 6 2.0128 -0.7449 -3.7469 28 6 1.5291 -0.0001 -2.4986 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.2502 -2.3954 4.2416 34 1 1.6766 -1.7489 -1.2490 35 1 3.9344 0.3054 -1.2740 36 1 3.9337 -1.2147 -0.3469 37 1 3.7905 -2.5242 -2.4137 38 1 5.1629 -1.3959 -2.5409 39 1 5.7484 -2.5804 -3.9724 40 1 8.1972 -2.6777 -3.7850 41 1 6.0169 1.5250 -5.1869 42 1 1.5576 -1.7346 -3.7812 43 1 1.7362 -0.1820 -4.6383 44 1 0.4394 0.0205 -2.4868 45 1 1.9122 1.0203 -2.5118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317685200.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:53 Heat of formation + Delta-G solvation = -88.103030 kcal Electronic energy + Delta-G solvation = -29380.248636 eV Core-core repulsion = 25033.856811 eV Total energy + Delta-G solvation = -4346.391824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.83046 -48.90057 -40.83569 -38.82303 -37.81168 -35.52884 -33.08558 -31.78080 -31.48947 -30.85898 -30.31916 -28.29147 -25.77160 -24.50900 -23.70682 -23.35382 -22.76755 -21.29970 -19.94311 -19.48686 -18.24207 -18.08804 -17.53434 -17.15112 -16.71369 -16.37253 -16.06274 -15.33721 -15.28983 -15.00815 -14.85695 -14.59392 -14.34448 -14.04102 -13.92789 -13.76127 -13.64165 -13.15040 -13.12417 -12.86661 -12.61024 -12.43253 -12.20756 -12.11992 -11.79896 -11.65757 -11.22219 -11.04449 -10.89804 -10.76122 -10.39472 -10.31845 -10.22455 -10.06489 -9.83647 -9.62343 -9.56665 -9.10771 -8.94197 -8.72164 -6.98216 -5.80243 -3.08009 0.21652 0.53057 2.28795 2.65510 3.03926 3.33841 3.40742 3.46821 3.47582 3.91819 4.03414 4.13394 4.43052 4.55372 4.60143 4.81474 4.94409 5.00095 5.10882 5.19499 5.30118 5.31175 5.36744 5.43973 5.44866 5.50393 5.59993 5.65821 5.70550 5.86058 5.87257 5.94803 6.05920 6.14731 6.21614 6.27133 6.33784 6.43056 6.48275 6.61451 6.72781 6.90200 7.09006 7.18655 7.67837 7.87669 8.38914 9.50371 10.07994 10.42808 11.42433 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.003014 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.199850 B = 9287.871954 C =10925.520558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.178 3.822 3 H 0.045 0.955 4 N -0.723 5.723 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.013 4.013 8 N -0.934 5.934 9 Si 0.903 3.097 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.090 4.090 14 C -0.123 4.123 15 C 0.093 3.907 16 N -0.596 5.596 17 C 0.561 3.439 18 O -0.536 6.536 19 C -0.103 4.103 20 C -0.070 4.070 21 C -0.127 4.127 22 C 0.086 3.914 23 F -0.124 7.124 24 C 0.066 3.934 25 F -0.124 7.124 26 C -0.078 4.078 27 C 0.113 3.887 28 C -0.129 4.129 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.051 0.949 32 H 0.383 0.617 33 H 0.254 0.746 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.150 0.850 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.155 -0.605 -18.186 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.063 0.937 4 N -0.364 5.364 5 C -0.367 4.367 6 H 0.086 0.914 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.735 3.265 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.110 4.110 14 C -0.161 4.161 15 C -0.029 4.029 16 N -0.328 5.328 17 C 0.348 3.652 18 O -0.414 6.414 19 C -0.106 4.106 20 C -0.089 4.089 21 C -0.146 4.146 22 C 0.066 3.934 23 F -0.103 7.103 24 C 0.046 3.954 25 F -0.103 7.103 26 C -0.097 4.097 27 C -0.009 4.009 28 C -0.167 4.167 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.216 0.784 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.168 0.832 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.969 -0.213 -18.571 19.508 hybrid contribution 0.567 0.334 1.133 1.310 sum 6.537 0.121 -17.438 18.623 Atomic orbital electron populations 1.22497 0.99514 1.00763 0.99881 1.20212 0.91609 0.95331 0.86053 0.93736 1.42405 1.78114 1.10601 1.05281 1.19223 1.36209 0.93828 0.87405 0.91354 1.24691 1.02300 0.95947 0.97916 1.69645 1.51121 1.08654 1.28824 0.86247 0.77286 0.78854 0.84155 1.21817 1.21824 1.20831 1.21392 0.94897 0.99987 0.94684 1.21898 0.96086 1.01053 0.97074 1.22255 0.98701 0.97559 0.84404 1.48111 1.07423 1.59942 1.17347 1.18063 0.85866 0.77890 0.83346 1.90809 1.74545 1.46754 1.29257 1.19780 0.94048 0.94472 1.02315 1.21301 0.93900 0.97747 0.95948 1.21055 0.93742 0.97950 1.01828 1.17900 0.77973 0.94189 1.03380 1.91556 1.28373 1.96806 1.93520 1.17464 0.89402 0.83347 1.05177 1.91561 1.75766 1.51589 1.91357 1.21021 0.90502 1.00012 0.98200 1.21713 0.78250 1.01152 0.99773 1.22033 1.01339 0.99665 0.93702 0.93582 0.94289 0.93024 0.78356 0.93585 0.91289 0.91858 0.88752 0.90716 0.89374 0.83229 0.82732 0.82869 0.91181 0.89140 0.90156 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.80 9.14 37.15 0.34 -2.46 16 2 C 0.18 3.20 2.47 -67.93 -0.17 3.03 16 3 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 4 N -0.72 -16.64 4.41 -53.43 -0.24 -16.87 16 5 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 6 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 9 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C -0.09 -1.27 1.79 -90.58 -0.16 -1.43 16 14 C -0.12 -1.69 5.22 -26.61 -0.14 -1.83 16 15 C 0.09 0.97 5.38 -3.71 -0.02 0.95 16 16 N -0.60 -6.70 2.97 -173.92 -0.52 -7.21 16 17 C 0.56 6.87 7.23 -12.39 -0.09 6.78 16 18 O -0.54 -8.19 16.47 5.30 0.09 -8.10 16 19 C -0.10 -1.05 5.00 -104.97 -0.52 -1.57 16 20 C -0.07 -0.56 7.36 -39.20 -0.29 -0.85 16 21 C -0.13 -0.96 10.01 -39.59 -0.40 -1.36 16 22 C 0.09 0.83 7.31 -39.22 -0.29 0.55 16 23 F -0.12 -1.32 17.17 2.25 0.04 -1.28 16 24 C 0.07 0.69 7.30 -39.42 -0.29 0.41 16 25 F -0.12 -1.42 17.18 2.25 0.04 -1.38 16 26 C -0.08 -0.79 9.71 -39.13 -0.38 -1.17 16 27 C 0.11 1.24 6.42 -3.71 -0.02 1.21 16 28 C -0.13 -1.52 5.04 -26.61 -0.13 -1.65 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.38 9.32 7.58 -40.82 -0.31 9.01 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.54 7.41 -51.93 -0.38 1.16 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.82 4.55 -51.93 -0.24 0.58 16 39 H 0.15 0.90 7.08 -52.49 -0.37 0.53 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.04 7.02 -51.93 -0.36 0.68 16 44 H 0.08 0.88 6.36 -51.93 -0.33 0.55 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -30.66 370.67 -8.21 -38.86 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.10 Total: 6.03 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.81 Total: -6.20 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.03 Total: -50.30 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.08 Total: -2.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.66 -8.21 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317685200.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.238 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds