Wall clock time and date at job start Tue Mar 31 2020 21:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46861 * 2 1 4 4 C 1.50696 * 109.47228 * 240.00174 * 2 1 3 5 5 C 1.38389 * 120.00109 * 84.99999 * 4 2 1 6 6 N 1.32125 * 119.99621 * 179.97438 * 5 4 2 7 7 C 1.32159 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.38340 * 119.99920 * 359.97438 * 7 6 5 9 9 N 1.32127 * 119.99906 * 264.72486 * 4 2 1 10 10 N 1.46906 * 109.47160 * 119.99993 * 2 1 3 11 11 C 1.46893 * 111.00136 * 176.04576 * 10 2 1 12 12 C 1.46901 * 110.99853 * 300.00271 * 10 2 1 13 13 C 1.53000 * 109.46769 * 170.00087 * 12 10 2 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 10 15 15 C 1.46504 * 120.00381 * 90.00024 * 14 13 12 16 16 C 1.34781 * 119.99786 * 269.99584 * 14 13 12 17 17 O 1.21281 * 120.00142 * 0.02562 * 16 14 13 18 18 C 1.50703 * 120.00021 * 180.02562 * 16 14 13 19 19 S 1.80999 * 109.47324 * 180.02562 * 18 16 14 20 20 C 1.76197 * 100.00030 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00038 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99974 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99810 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47085 * 60.00426 * 24 22 20 26 26 H 1.48501 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47268 * 300.00100 * 24 22 20 28 28 H 1.09002 * 109.47327 * 60.00180 * 1 2 3 29 29 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47233 * 299.99961 * 1 2 3 31 31 H 1.07997 * 120.00126 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.99855 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.99530 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47439 * 183.95618 * 11 10 2 35 35 H 1.08997 * 109.47257 * 303.95746 * 11 10 2 36 36 H 1.09006 * 109.46808 * 63.95302 * 11 10 2 37 37 H 1.09002 * 109.47401 * 49.99794 * 12 10 2 38 38 H 1.09001 * 109.46874 * 289.99807 * 12 10 2 39 39 H 1.09001 * 109.47194 * 299.99524 * 13 12 10 40 40 H 1.08992 * 109.47399 * 59.99697 * 13 12 10 41 41 H 1.08996 * 109.47253 * 89.99251 * 15 14 13 42 42 H 1.08999 * 109.47380 * 210.00276 * 15 14 13 43 43 H 1.09001 * 109.46721 * 329.99669 * 15 14 13 44 44 H 1.08997 * 109.47209 * 300.00559 * 18 16 14 45 45 H 1.09001 * 109.47189 * 59.99732 * 18 16 14 46 46 H 0.97002 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 2.1645 -0.0200 -2.4225 6 7 2.6054 -0.6427 -3.5011 7 6 2.9197 -1.9250 -3.4418 8 6 2.7876 -2.6151 -2.2501 9 7 2.3517 -1.9910 -1.1698 10 7 2.0197 -0.6925 1.1995 11 6 3.4850 -0.7946 1.1871 12 6 1.5486 -0.0264 2.4211 13 6 1.8626 -0.9044 3.6341 14 7 1.3923 -0.2404 4.8524 15 6 0.0314 -0.4806 5.3388 16 6 2.2116 0.5914 5.5257 17 8 3.3381 0.7906 5.1228 18 6 1.7281 1.2741 6.7792 19 16 3.0482 2.3178 7.4455 20 6 2.2330 2.9747 8.8627 21 1 1.2143 2.6895 9.0803 22 6 2.9004 3.8578 9.7000 23 7 4.1422 4.2050 9.4351 24 14 2.0359 4.5548 11.2021 25 1 1.6324 3.4438 12.1010 26 1 2.9581 5.4670 11.9251 27 1 0.8300 5.3082 10.7741 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9073 1.0278 -2.4711 32 1 3.2805 -2.4340 -4.3234 33 1 3.0440 -3.6631 -2.2017 34 1 3.8163 -1.3722 2.0500 35 1 3.8069 -1.2915 0.2720 36 1 3.9191 0.2044 1.2301 37 1 0.4721 0.1324 2.3564 38 1 2.0518 0.9346 2.5280 39 1 1.3594 -1.8653 3.5272 40 1 2.9390 -1.0632 3.6988 41 1 0.0343 -1.3303 6.0214 42 1 -0.3289 0.4050 5.8624 43 1 -0.6236 -0.6951 4.4945 44 1 0.8605 1.8911 6.5453 45 1 1.4505 0.5225 7.5182 46 1 4.6084 4.8225 10.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319979279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:08 Heat of formation + Delta-G solvation = 35.691373 kcal Electronic energy + Delta-G solvation = -26343.371805 eV Core-core repulsion = 22588.481247 eV Total energy + Delta-G solvation = -3754.890558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.56674 -39.58683 -38.17816 -35.41703 -34.44751 -33.13108 -32.43069 -30.60213 -30.30280 -28.33086 -26.66114 -25.55070 -25.34288 -25.13328 -24.70590 -22.42897 -20.60423 -19.16470 -18.00165 -17.66494 -17.34040 -16.76044 -16.52442 -16.05630 -15.59539 -15.43492 -15.34991 -14.80810 -14.66251 -14.44954 -13.96827 -13.77967 -13.53309 -13.21093 -13.15891 -12.84092 -12.60118 -12.56889 -12.37574 -12.25004 -12.10441 -11.92773 -11.79092 -11.72962 -11.59541 -11.18563 -11.04666 -11.04283 -10.79582 -10.71233 -9.81665 -9.63550 -9.39604 -9.33063 -9.06176 -8.62845 -8.42249 -8.23186 -6.50435 -6.21736 -3.92447 0.37315 0.79060 2.88375 3.05501 3.23036 3.23922 3.28307 3.31409 3.50441 3.59969 3.75655 3.90957 4.20225 4.20491 4.31658 4.71430 4.78405 4.79028 4.91715 4.95869 4.99610 5.06257 5.13000 5.14957 5.15743 5.27739 5.33651 5.44156 5.47918 5.48922 5.56898 5.58588 5.71550 5.80293 5.86437 5.87079 5.91611 5.97747 6.05638 6.13632 6.58119 6.74674 6.89528 6.97956 7.45016 7.54522 7.59129 8.34716 8.56619 9.23341 10.85605 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.001921 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.752536 B =14572.627613 C =14825.075480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.063 0.937 4 C 0.091 3.909 5 C 0.052 3.948 6 N -0.437 5.437 7 C 0.040 3.960 8 C 0.049 3.951 9 N -0.405 5.405 10 N -0.517 5.517 11 C 0.024 3.976 12 C 0.034 3.966 13 C 0.124 3.876 14 N -0.625 5.625 15 C 0.081 3.919 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.150 4.150 19 S -0.062 6.062 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.167 0.833 32 H 0.168 0.832 33 H 0.170 0.830 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.891 -13.467 -23.204 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 H 0.081 0.919 4 C -0.050 4.050 5 C -0.109 4.109 6 N -0.152 5.152 7 C -0.120 4.120 8 C -0.111 4.111 9 N -0.120 5.120 10 N -0.242 5.242 11 C -0.124 4.124 12 C -0.094 4.094 13 C 0.000 4.000 14 N -0.361 5.361 15 C -0.063 4.063 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.301 4.301 19 S 0.164 5.836 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.184 0.816 32 H 0.185 0.815 33 H 0.187 0.813 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.238 -13.539 -23.744 28.275 hybrid contribution -1.553 0.952 1.361 2.274 sum -8.792 -12.587 -22.383 27.143 Atomic orbital electron populations 1.21893 0.92385 1.03324 1.02448 1.20472 0.96234 0.94427 0.86582 0.91934 1.22167 0.95668 0.91384 0.95799 1.23540 0.96740 1.01604 0.88992 1.68472 1.07458 1.09647 1.29581 1.23793 0.97490 0.91294 0.99426 1.23911 0.96142 1.01790 0.89291 1.68461 1.06068 1.08394 1.29044 1.61865 1.11000 1.51018 1.00270 1.22467 0.86629 1.00222 1.03097 1.22615 1.00942 0.96579 0.89296 1.21281 1.01539 0.94883 0.82284 1.47854 1.14454 1.47444 1.26347 1.21772 0.82577 1.02072 0.99847 1.20370 0.84955 0.78101 0.84584 1.90690 1.19063 1.61136 1.68101 1.23556 1.06239 1.03179 0.97076 1.85389 1.15044 1.53125 1.30019 1.22817 1.01932 1.32138 1.11468 0.90992 1.24993 0.94943 0.95601 0.98054 1.70014 1.10123 1.32472 1.37681 0.86226 0.79128 0.78815 0.81342 1.19927 1.20815 1.19949 0.91930 0.91235 0.91076 0.81581 0.81480 0.81324 0.90673 0.91356 0.95671 0.90220 0.93922 0.90019 0.89827 0.92653 0.90720 0.91353 0.89292 0.89260 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.97 37.16 0.33 -0.72 16 2 C 0.13 1.19 2.34 -68.87 -0.16 1.02 16 3 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 4 C 0.09 0.82 4.89 -82.41 -0.40 0.42 16 5 C 0.05 0.43 10.90 -17.37 -0.19 0.24 16 6 N -0.44 -3.94 10.50 -13.06 -0.14 -4.07 16 7 C 0.04 0.27 11.22 -17.37 -0.20 0.08 16 8 C 0.05 0.35 11.22 -17.38 -0.20 0.15 16 9 N -0.40 -3.88 8.22 -9.29 -0.08 -3.96 16 10 N -0.52 -5.46 4.34 -236.29 -1.03 -6.49 16 11 C 0.02 0.27 8.90 60.06 0.53 0.81 16 12 C 0.03 0.39 5.10 -3.82 -0.02 0.37 16 13 C 0.12 1.53 5.33 -4.04 -0.02 1.51 16 14 N -0.62 -8.73 2.87 -181.57 -0.52 -9.25 16 15 C 0.08 0.82 10.24 59.85 0.61 1.43 16 16 C 0.53 10.07 7.69 -10.98 -0.08 9.98 16 17 O -0.52 -11.71 15.44 5.56 0.09 -11.62 16 18 C -0.15 -3.04 4.71 36.01 0.17 -2.87 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 24 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.50 6.20 -51.93 -0.32 0.18 16 31 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 33 H 0.17 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 35 H 0.07 0.76 5.72 -51.93 -0.30 0.47 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.78 5.83 -51.93 -0.30 0.48 16 38 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 39 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 40 H 0.08 1.21 5.83 -51.93 -0.30 0.91 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.77 6.44 -51.93 -0.33 0.43 16 43 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 44 H 0.09 1.66 7.40 -51.92 -0.38 1.27 16 45 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -35.83 389.79 -8.61 -44.44 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.89 Total: -1.41 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 0.58 Total: -0.49 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -1.03 Total: -49.20 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.83 -8.61 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319979279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.135 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds