Wall clock time and date at job start Tue Mar 31 2020 21:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46861 * 2 1 4 4 C 1.50696 * 109.47228 * 240.00174 * 2 1 3 5 5 C 1.38389 * 120.00109 * 84.99999 * 4 2 1 6 6 N 1.32125 * 119.99621 * 179.97438 * 5 4 2 7 7 C 1.32159 * 120.00136 * 0.02562 * 6 5 4 8 8 C 1.38340 * 119.99920 * 359.97438 * 7 6 5 9 9 N 1.32127 * 119.99906 * 264.72486 * 4 2 1 10 10 N 1.46906 * 109.47160 * 119.99993 * 2 1 3 11 11 C 1.46893 * 111.00136 * 176.04576 * 10 2 1 12 12 C 1.46901 * 110.99853 * 300.00271 * 10 2 1 13 13 C 1.53000 * 109.46769 * 170.00087 * 12 10 2 14 14 N 1.46499 * 109.46840 * 180.02562 * 13 12 10 15 15 C 1.46504 * 120.00381 * 90.00024 * 14 13 12 16 16 C 1.34781 * 119.99786 * 269.99584 * 14 13 12 17 17 O 1.21281 * 120.00142 * 0.02562 * 16 14 13 18 18 C 1.50703 * 120.00021 * 180.02562 * 16 14 13 19 19 S 1.80999 * 109.47324 * 180.02562 * 18 16 14 20 20 C 1.76197 * 100.00030 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00038 * 0.02562 * 20 19 18 22 22 C 1.38796 * 119.99974 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99810 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47085 * 60.00426 * 24 22 20 26 26 H 1.48501 * 109.47035 * 180.02562 * 24 22 20 27 27 H 1.48493 * 109.47268 * 300.00100 * 24 22 20 28 28 H 1.09002 * 109.47327 * 60.00180 * 1 2 3 29 29 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47233 * 299.99961 * 1 2 3 31 31 H 1.07997 * 120.00126 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.99855 * 180.02562 * 7 6 5 33 33 H 1.07999 * 119.99530 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47439 * 183.95618 * 11 10 2 35 35 H 1.08997 * 109.47257 * 303.95746 * 11 10 2 36 36 H 1.09006 * 109.46808 * 63.95302 * 11 10 2 37 37 H 1.09002 * 109.47401 * 49.99794 * 12 10 2 38 38 H 1.09001 * 109.46874 * 289.99807 * 12 10 2 39 39 H 1.09001 * 109.47194 * 299.99524 * 13 12 10 40 40 H 1.08992 * 109.47399 * 59.99697 * 13 12 10 41 41 H 1.08996 * 109.47253 * 89.99251 * 15 14 13 42 42 H 1.08999 * 109.47380 * 210.00276 * 15 14 13 43 43 H 1.09001 * 109.46721 * 329.99669 * 15 14 13 44 44 H 1.08997 * 109.47209 * 300.00559 * 18 16 14 45 45 H 1.09001 * 109.47189 * 59.99732 * 18 16 14 46 46 H 0.97002 * 119.99530 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 6 2.1645 -0.0200 -2.4225 6 7 2.6054 -0.6427 -3.5011 7 6 2.9197 -1.9250 -3.4418 8 6 2.7876 -2.6151 -2.2501 9 7 2.3517 -1.9910 -1.1698 10 7 2.0197 -0.6925 1.1995 11 6 3.4850 -0.7946 1.1871 12 6 1.5486 -0.0264 2.4211 13 6 1.8626 -0.9044 3.6341 14 7 1.3923 -0.2404 4.8524 15 6 0.0314 -0.4806 5.3388 16 6 2.2116 0.5914 5.5257 17 8 3.3381 0.7906 5.1228 18 6 1.7281 1.2741 6.7792 19 16 3.0482 2.3178 7.4455 20 6 2.2330 2.9747 8.8627 21 1 1.2143 2.6895 9.0803 22 6 2.9004 3.8578 9.7000 23 7 4.1422 4.2050 9.4351 24 14 2.0359 4.5548 11.2021 25 1 1.6324 3.4438 12.1010 26 1 2.9581 5.4670 11.9251 27 1 0.8300 5.3082 10.7741 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.9073 1.0278 -2.4711 32 1 3.2805 -2.4340 -4.3234 33 1 3.0440 -3.6631 -2.2017 34 1 3.8163 -1.3722 2.0500 35 1 3.8069 -1.2915 0.2720 36 1 3.9191 0.2044 1.2301 37 1 0.4721 0.1324 2.3564 38 1 2.0518 0.9346 2.5280 39 1 1.3594 -1.8653 3.5272 40 1 2.9390 -1.0632 3.6988 41 1 0.0343 -1.3303 6.0214 42 1 -0.3289 0.4050 5.8624 43 1 -0.6236 -0.6951 4.4945 44 1 0.8605 1.8911 6.5453 45 1 1.4505 0.5225 7.5182 46 1 4.6084 4.8225 10.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319979279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:07 Heat of formation + Delta-G solvation = 10.131875 kcal Electronic energy + Delta-G solvation = -26344.480148 eV Core-core repulsion = 22588.481247 eV Total energy + Delta-G solvation = -3755.998901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.16840 -40.90756 -39.07945 -36.64660 -35.11431 -34.58361 -33.87417 -31.73253 -31.05483 -29.57917 -27.69253 -27.59254 -26.15207 -25.91317 -25.39122 -23.33733 -21.40003 -20.60233 -19.53145 -18.64844 -18.09173 -17.87776 -17.34238 -17.18858 -16.87804 -16.65435 -16.47367 -16.14778 -15.83367 -15.41878 -15.20138 -14.81515 -14.53037 -14.38074 -14.22944 -14.04572 -13.85126 -13.54066 -13.33154 -13.18310 -13.15685 -12.98572 -12.87554 -12.82949 -12.62529 -12.55955 -12.44069 -12.37307 -11.91521 -11.75941 -11.63662 -11.12695 -10.90336 -10.26808 -10.21025 -9.96367 -9.72598 -9.38212 -8.67582 -8.34371 -6.12947 -0.18961 0.18976 1.25788 1.44111 1.45942 1.55463 1.57664 2.06966 2.27878 2.71634 2.83782 2.99596 3.02791 3.27693 3.38307 3.61832 3.71487 3.73971 3.94609 4.09073 4.14543 4.20799 4.23145 4.35540 4.36395 4.38488 4.42845 4.49429 4.50898 4.53133 4.59232 4.70693 4.75067 4.83621 4.85488 4.95581 4.97666 5.07379 5.24392 5.41485 5.42762 5.53260 5.93863 5.96367 6.19576 6.28885 6.37425 6.86740 7.06579 7.15267 8.74584 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027237 B = 0.001921 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.752536 B =14572.627613 C =14825.075480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.130 3.870 3 H 0.062 0.938 4 C 0.078 3.922 5 C 0.044 3.956 6 N -0.461 5.461 7 C 0.043 3.957 8 C 0.047 3.953 9 N -0.431 5.431 10 N -0.513 5.513 11 C 0.032 3.968 12 C 0.045 3.955 13 C 0.125 3.875 14 N -0.610 5.610 15 C 0.071 3.929 16 C 0.529 3.471 17 O -0.566 6.566 18 C -0.122 4.122 19 S -0.156 6.156 20 C -0.545 4.545 21 H 0.084 0.916 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 0.999 3.001 25 H -0.261 1.261 26 H -0.280 1.280 27 H -0.261 1.261 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.182 0.818 32 H 0.199 0.801 33 H 0.198 0.802 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.008 0.992 37 H 0.102 0.898 38 H 0.011 0.989 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 -14.738 -23.670 30.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.020 3.980 3 H 0.079 0.921 4 C -0.062 4.062 5 C -0.115 4.115 6 N -0.176 5.176 7 C -0.117 4.117 8 C -0.113 4.113 9 N -0.146 5.146 10 N -0.238 5.238 11 C -0.117 4.117 12 C -0.084 4.084 13 C 0.002 3.998 14 N -0.344 5.344 15 C -0.071 4.071 16 C 0.317 3.683 17 O -0.444 6.444 18 C -0.274 4.274 19 S 0.072 5.928 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.199 0.801 32 H 0.216 0.784 33 H 0.214 0.786 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.026 0.974 37 H 0.120 0.880 38 H 0.029 0.971 39 H 0.129 0.871 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.205 -14.836 -24.231 30.189 hybrid contribution -0.680 1.193 1.343 1.921 sum -10.885 -13.643 -22.888 28.783 Atomic orbital electron populations 1.21850 0.90903 1.03161 1.03405 1.20572 0.97380 0.94196 0.85850 0.92063 1.22137 0.96523 0.91571 0.95925 1.23760 0.96653 1.02345 0.88732 1.68514 1.08290 1.10812 1.29946 1.24328 0.96193 0.90705 1.00488 1.24398 0.95199 1.02967 0.88741 1.68414 1.06979 1.08803 1.30438 1.61890 1.10145 1.51058 1.00669 1.22355 0.87460 0.99056 1.02814 1.22493 1.01826 0.94756 0.89300 1.21383 1.00445 0.96069 0.81904 1.47837 1.15283 1.45321 1.25921 1.22125 0.80475 1.02794 1.01701 1.20194 0.84832 0.78826 0.84492 1.90676 1.21284 1.63193 1.69261 1.23372 1.03631 1.02461 0.97892 1.85598 1.20226 1.55650 1.31370 1.23163 1.02370 1.32298 1.11479 0.89816 1.26150 0.95641 0.95818 1.01633 1.70189 1.12068 1.33342 1.39227 0.84997 0.78003 0.78226 0.76733 1.18600 1.20480 1.18551 0.90429 0.91824 0.90666 0.80119 0.78417 0.78569 0.91516 0.91022 0.97386 0.87951 0.97079 0.87142 0.92413 0.91074 0.90588 0.87929 0.87279 0.87499 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 8.97 71.98 0.65 -1.11 16 2 C 0.13 2.23 2.34 44.17 0.10 2.33 16 3 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 4 C 0.08 1.37 4.89 42.55 0.21 1.58 16 5 C 0.04 0.71 10.90 84.68 0.92 1.63 16 6 N -0.46 -7.77 10.50 -195.22 -2.05 -9.82 16 7 C 0.04 0.51 11.22 84.67 0.95 1.46 16 8 C 0.05 0.59 11.22 84.67 0.95 1.54 16 9 N -0.43 -7.83 8.22 -183.30 -1.51 -9.33 16 10 N -0.51 -10.62 4.34 -901.48 -3.91 -14.53 16 11 C 0.03 0.75 8.90 127.69 1.14 1.88 16 12 C 0.05 0.99 5.10 86.30 0.44 1.43 16 13 C 0.12 2.97 5.33 86.38 0.46 3.43 16 14 N -0.61 -16.09 2.87 -846.75 -2.43 -18.53 16 15 C 0.07 1.19 10.24 127.77 1.31 2.49 16 16 C 0.53 20.08 7.69 87.66 0.67 20.75 16 17 O -0.57 -26.82 15.44 -3.03 -0.05 -26.87 16 18 C -0.12 -4.91 4.71 71.24 0.34 -4.57 16 19 S -0.16 -8.73 20.57 -56.49 -1.16 -9.89 16 20 C -0.55 -31.17 9.50 67.95 0.65 -30.52 16 21 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 22 C 0.01 0.70 5.49 84.86 0.47 1.16 16 23 N -0.91 -56.32 13.22 21.65 0.29 -56.03 16 24 Si 1.00 43.49 29.55 68.60 2.03 45.51 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.89 6.20 -2.39 -0.01 0.88 16 31 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.20 1.14 8.06 -2.91 -0.02 1.12 16 34 H 0.07 1.66 6.47 -2.39 -0.02 1.64 16 35 H 0.07 1.63 5.72 -2.39 -0.01 1.62 16 36 H 0.01 0.20 8.14 -2.38 -0.02 0.18 16 37 H 0.10 1.77 5.83 -2.39 -0.01 1.76 16 38 H 0.01 0.31 8.12 -2.39 -0.02 0.29 16 39 H 0.11 2.03 8.07 -2.39 -0.02 2.02 16 40 H 0.06 1.71 5.83 -2.39 -0.01 1.70 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.30 6.44 -2.39 -0.02 1.29 16 43 H 0.10 1.09 8.07 -2.39 -0.02 1.07 16 44 H 0.11 3.91 7.40 -2.40 -0.02 3.90 16 45 H 0.11 3.89 8.11 -2.39 -0.02 3.87 16 46 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -81.53 389.79 1.43 -80.10 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.98 Total: 15.90 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 9.25 Total: 3.49 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -9.61 Total: -108.24 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -81.53 1.43 -80.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319979279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.229 kcal (2) G-P(sol) polarization free energy of solvation -81.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds