Wall clock time and date at job start Tue Mar 31 2020 20:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 116.99793 * 2 1 4 4 O 1.20826 * 120.00292 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00009 * 179.97438 * 3 2 1 6 6 H 1.08993 * 110.91489 * 297.56051 * 5 3 2 7 7 C 1.55167 * 111.00217 * 61.45535 * 5 3 2 8 8 C 1.54319 * 103.10248 * 153.66202 * 7 5 3 9 9 N 1.47021 * 107.27347 * 337.72192 * 8 7 5 10 10 C 1.34779 * 125.64919 * 178.89835 * 9 8 7 11 11 O 1.21347 * 119.99773 * 180.02562 * 10 9 8 12 12 C 1.49444 * 119.99861 * 0.03056 * 10 9 8 13 13 O 1.21356 * 120.00282 * 354.78698 * 12 10 9 14 14 N 1.34781 * 119.99953 * 174.79037 * 12 10 9 15 15 C 1.46504 * 119.99820 * 185.05333 * 14 12 10 16 16 C 1.53004 * 109.46638 * 185.00692 * 15 14 12 17 17 C 1.50695 * 115.55097 * 269.59057 * 16 15 14 18 18 H 1.08007 * 119.99989 * 95.23395 * 17 16 15 19 19 C 1.37875 * 120.00322 * 275.23618 * 17 16 15 20 20 N 1.31514 * 119.99981 * 5.14345 * 19 17 16 21 21 Si 1.86798 * 120.00019 * 185.13726 * 19 17 16 22 22 H 1.48503 * 109.47530 * 60.00117 * 21 19 17 23 23 H 1.48505 * 109.47028 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47656 * 300.00041 * 21 19 17 25 25 C 1.53003 * 117.49375 * 123.88823 * 16 15 14 26 26 C 1.52999 * 117.49944 * 55.26627 * 16 15 14 27 27 C 1.47422 * 108.70197 * 358.93662 * 9 8 7 28 28 H 1.08997 * 110.37121 * 265.18101 * 27 9 8 29 29 C 1.53006 * 110.36800 * 142.96864 * 27 9 8 30 30 H 1.08994 * 109.46998 * 59.99787 * 1 2 3 31 31 H 1.08999 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46819 * 299.99701 * 1 2 3 33 33 H 1.09004 * 110.71758 * 35.21308 * 7 5 3 34 34 H 1.08999 * 110.72110 * 272.12335 * 7 5 3 35 35 H 1.09003 * 109.87839 * 97.13984 * 8 7 5 36 36 H 1.08997 * 109.88553 * 218.29945 * 8 7 5 37 37 H 0.96993 * 119.99979 * 5.06176 * 14 12 10 38 38 H 1.08994 * 109.47525 * 305.01268 * 15 14 12 39 39 H 1.09002 * 109.46762 * 65.01552 * 15 14 12 40 40 H 0.96999 * 119.99602 * 185.00341 * 20 19 17 41 41 H 1.08992 * 117.50084 * 359.97438 * 25 16 15 42 42 H 1.08999 * 117.49601 * 145.02184 * 25 16 15 43 43 H 1.08995 * 117.50057 * 214.97774 * 26 16 15 44 44 H 1.09004 * 117.49888 * 359.97438 * 26 16 15 45 45 H 1.08991 * 109.47175 * 61.45207 * 29 27 9 46 46 H 1.08995 * 109.47204 * 181.45809 * 29 27 9 47 47 H 1.09012 * 109.46600 * 301.45401 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9792 0.8251 0.9034 7 6 4.1585 0.6126 -1.2715 8 6 5.5050 1.3444 -1.4526 9 7 5.4009 2.6307 -0.7482 10 6 6.3772 3.5549 -0.6520 11 8 6.1792 4.5853 -0.0424 12 6 7.7034 3.3106 -1.2960 13 8 7.9340 2.2425 -1.8241 14 7 8.6434 4.2764 -1.2903 15 6 9.9007 4.0791 -2.0160 16 6 10.8352 5.2606 -1.7476 17 6 10.7215 6.4117 -2.7134 18 1 10.0922 7.2566 -2.4749 19 6 11.4205 6.3865 -3.9015 20 7 12.1059 5.3159 -4.2386 21 14 11.3940 7.8730 -5.0325 22 1 11.9470 9.0503 -4.3159 23 1 12.2177 7.5938 -6.2362 24 1 9.9959 8.1564 -5.4449 25 6 12.2209 4.9499 -1.1780 26 6 11.1543 5.5916 -0.2883 27 6 4.0520 2.7418 -0.1638 28 1 3.3910 3.2885 -0.8362 29 6 4.1172 3.4362 1.1981 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.5097 0.7804 -2.1313 34 1 4.3175 -0.4540 -1.1126 35 1 6.3108 0.7500 -1.0219 36 1 5.6940 1.5163 -2.5122 37 1 8.4876 5.1020 -0.8057 38 1 10.3743 3.1573 -1.6786 39 1 9.6968 4.0128 -3.0847 40 1 12.6558 5.3238 -5.0376 41 1 12.4666 3.9041 -0.9942 42 1 13.0505 5.5783 -1.5019 43 1 11.2822 6.6419 -0.0268 44 1 10.6981 4.9679 0.4806 45 1 4.5111 4.4447 1.0732 46 1 3.1169 3.4874 1.6281 47 1 4.7701 2.8708 1.8632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324173110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:06 Heat of formation + Delta-G solvation = -120.840956 kcal Electronic energy + Delta-G solvation = -29695.038614 eV Core-core repulsion = 25458.314683 eV Total energy + Delta-G solvation = -4236.723932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31104 -40.39122 -38.75593 -37.55147 -36.82698 -36.70446 -33.54636 -32.28722 -31.96837 -31.67419 -28.55995 -27.17892 -26.40714 -25.50130 -24.30044 -22.79489 -22.03372 -21.23987 -20.53245 -19.57622 -19.12237 -18.24014 -17.49423 -17.34320 -16.65644 -16.35229 -16.15487 -15.77217 -15.11897 -15.04252 -14.67273 -14.37737 -14.27263 -14.03296 -13.93382 -13.64282 -13.52847 -13.24630 -13.03332 -12.62550 -12.55224 -12.32955 -12.15160 -11.87688 -11.85129 -11.57851 -11.46582 -11.26445 -11.19646 -11.04987 -10.93598 -10.91622 -10.68676 -10.56157 -10.29864 -9.69948 -9.19451 -9.03281 -8.86312 -8.51692 -8.38368 -8.25782 -6.10917 -4.19023 1.70966 1.75750 2.07481 2.59321 3.28171 3.33447 3.36090 3.52398 3.62914 3.98210 4.07952 4.35121 4.35661 4.63343 4.69266 4.76409 4.79552 4.83712 4.92003 5.10007 5.11576 5.18178 5.27214 5.28818 5.40702 5.56418 5.72951 5.76208 5.84432 5.91938 5.94357 6.01807 6.29222 6.32366 6.34842 6.50947 6.62839 6.71161 6.96212 7.03914 7.16026 7.30526 7.36805 7.43291 7.68376 7.80198 8.07901 8.31121 8.45800 8.83519 9.48450 10.97602 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002279 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.872640 B =12285.083135 C =12414.054250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.476 3.524 4 O -0.499 6.499 5 C -0.099 4.099 6 H 0.127 0.873 7 C -0.122 4.122 8 C 0.108 3.892 9 N -0.596 5.596 10 C 0.527 3.473 11 O -0.514 6.514 12 C 0.498 3.502 13 O -0.532 6.532 14 N -0.674 5.674 15 C 0.160 3.840 16 C 0.025 3.975 17 C -0.500 4.500 18 H 0.061 0.939 19 C 0.072 3.928 20 N -0.876 5.876 21 Si 0.891 3.109 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.145 4.145 26 C -0.209 4.209 27 C 0.153 3.847 28 H 0.093 0.907 29 C -0.167 4.167 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.410 0.590 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.066 0.934 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.917 -12.534 8.641 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.318 3.682 4 O -0.385 6.385 5 C -0.119 4.119 6 H 0.145 0.855 7 C -0.160 4.160 8 C -0.014 4.014 9 N -0.332 5.332 10 C 0.310 3.690 11 O -0.390 6.390 12 C 0.277 3.723 13 O -0.410 6.410 14 N -0.325 5.325 15 C 0.038 3.962 16 C 0.025 3.975 17 C -0.537 4.537 18 H 0.079 0.921 19 C -0.132 4.132 20 N -0.512 5.512 21 Si 0.718 3.282 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.183 4.183 26 C -0.246 4.246 27 C 0.051 3.949 28 H 0.111 0.889 29 C -0.225 4.225 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.085 0.915 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.911 -12.460 8.366 24.143 hybrid contribution -0.222 1.086 -0.487 1.211 sum -19.132 -11.374 7.880 23.611 Atomic orbital electron populations 1.23310 0.75994 1.03871 1.02730 1.86507 1.23620 1.33083 1.83992 1.23217 0.91164 0.81524 0.72298 1.90706 1.66924 1.36246 1.44662 1.22365 0.87869 0.98799 1.02824 0.85521 1.22755 0.96380 1.01080 0.95747 1.22203 0.96956 0.83435 0.98809 1.48246 1.12469 1.19343 1.53160 1.20222 0.84883 0.82787 0.81067 1.90698 1.81129 1.25706 1.41421 1.19820 0.85094 0.85385 0.81965 1.90708 1.80194 1.24510 1.45595 1.46094 1.17075 1.18872 1.50417 1.21391 0.81047 0.97572 0.96171 1.19064 0.93331 0.94652 0.90499 1.20390 1.29198 1.02760 1.01373 0.92058 1.24982 0.95385 0.95658 0.97148 1.69996 1.28711 1.26889 1.25566 0.86681 0.78211 0.83154 0.80115 1.20196 1.21250 1.20137 1.22540 0.94035 0.98466 1.03281 1.22989 1.06788 1.00071 0.94764 1.21820 0.83121 0.92924 0.97070 0.88941 1.22219 1.02321 1.03679 0.94250 0.91736 0.87910 0.91767 0.89940 0.88231 0.89319 0.89700 0.75373 0.93100 0.90360 0.92778 0.91602 0.89711 0.90074 0.91485 0.88687 0.91508 0.92402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.83 10.55 -39.25 -0.41 -3.24 16 3 C 0.48 4.46 7.27 36.01 0.26 4.72 16 4 O -0.50 -5.99 15.44 -18.75 -0.29 -6.28 16 5 C -0.10 -0.84 2.98 -89.36 -0.27 -1.10 16 6 H 0.13 0.88 8.06 -51.93 -0.42 0.46 16 7 C -0.12 -0.91 6.38 -24.89 -0.16 -1.07 16 8 C 0.11 1.16 5.50 -3.07 -0.02 1.15 16 9 N -0.60 -7.78 3.24 -163.26 -0.53 -8.31 16 10 C 0.53 8.50 7.69 -11.59 -0.09 8.41 16 11 O -0.51 -9.02 14.14 5.50 0.08 -8.94 16 12 C 0.50 9.02 7.84 -11.59 -0.09 8.92 16 13 O -0.53 -10.20 14.13 5.49 0.08 -10.12 16 14 N -0.67 -12.98 5.40 -60.73 -0.33 -13.31 16 15 C 0.16 3.53 5.71 -4.04 -0.02 3.50 16 16 C 0.03 0.59 1.46 -155.66 -0.23 0.36 16 17 C -0.50 -12.99 8.77 -34.44 -0.30 -13.29 16 18 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 19 C 0.07 1.91 5.40 -17.82 -0.10 1.82 16 20 N -0.88 -23.97 12.91 55.43 0.72 -23.26 16 21 Si 0.89 20.65 29.54 -169.99 -5.02 15.62 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 C -0.15 -3.24 9.38 -26.73 -0.25 -3.49 16 26 C -0.21 -4.28 9.50 -26.73 -0.25 -4.53 16 27 C 0.15 1.74 2.85 -66.16 -0.19 1.55 16 28 H 0.09 1.14 7.54 -51.93 -0.39 0.75 16 29 C -0.17 -1.92 8.71 37.16 0.32 -1.60 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 0.98 7.47 -51.93 -0.39 0.59 16 36 H 0.08 0.99 7.81 -51.93 -0.41 0.58 16 37 H 0.41 7.68 7.70 -40.82 -0.31 7.37 16 38 H 0.05 1.11 7.83 -51.93 -0.41 0.71 16 39 H 0.08 1.94 8.04 -51.93 -0.42 1.52 16 40 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 41 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 42 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 43 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 44 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.09 1.31 5.89 -51.93 -0.31 1.01 16 46 H 0.07 0.70 8.00 -51.93 -0.42 0.29 16 47 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -30.29 392.33 -7.33 -37.62 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.22 Total: 7.70 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.31 Total: 6.60 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.14 Total: -44.88 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.55 Total: -28.58 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.29 -7.33 -37.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324173110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.219 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds