Wall clock time and date at job start Tue Mar 31 2020 20:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34228 * 116.99793 * 2 1 4 4 O 1.20826 * 120.00292 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00009 * 179.97438 * 3 2 1 6 6 H 1.08993 * 110.91489 * 297.56051 * 5 3 2 7 7 C 1.55167 * 111.00217 * 61.45535 * 5 3 2 8 8 C 1.54319 * 103.10248 * 153.66202 * 7 5 3 9 9 N 1.47021 * 107.27347 * 337.72192 * 8 7 5 10 10 C 1.34779 * 125.64919 * 178.89835 * 9 8 7 11 11 O 1.21347 * 119.99773 * 180.02562 * 10 9 8 12 12 C 1.49444 * 119.99861 * 0.03056 * 10 9 8 13 13 O 1.21356 * 120.00282 * 354.78698 * 12 10 9 14 14 N 1.34781 * 119.99953 * 174.79037 * 12 10 9 15 15 C 1.46504 * 119.99820 * 185.05333 * 14 12 10 16 16 C 1.53004 * 109.46638 * 185.00692 * 15 14 12 17 17 C 1.50695 * 115.55097 * 269.59057 * 16 15 14 18 18 H 1.08007 * 119.99989 * 95.23395 * 17 16 15 19 19 C 1.37875 * 120.00322 * 275.23618 * 17 16 15 20 20 N 1.31514 * 119.99981 * 5.14345 * 19 17 16 21 21 Si 1.86798 * 120.00019 * 185.13726 * 19 17 16 22 22 H 1.48503 * 109.47530 * 60.00117 * 21 19 17 23 23 H 1.48505 * 109.47028 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47656 * 300.00041 * 21 19 17 25 25 C 1.53003 * 117.49375 * 123.88823 * 16 15 14 26 26 C 1.52999 * 117.49944 * 55.26627 * 16 15 14 27 27 C 1.47422 * 108.70197 * 358.93662 * 9 8 7 28 28 H 1.08997 * 110.37121 * 265.18101 * 27 9 8 29 29 C 1.53006 * 110.36800 * 142.96864 * 27 9 8 30 30 H 1.08994 * 109.46998 * 59.99787 * 1 2 3 31 31 H 1.08999 * 109.47112 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46819 * 299.99701 * 1 2 3 33 33 H 1.09004 * 110.71758 * 35.21308 * 7 5 3 34 34 H 1.08999 * 110.72110 * 272.12335 * 7 5 3 35 35 H 1.09003 * 109.87839 * 97.13984 * 8 7 5 36 36 H 1.08997 * 109.88553 * 218.29945 * 8 7 5 37 37 H 0.96993 * 119.99979 * 5.06176 * 14 12 10 38 38 H 1.08994 * 109.47525 * 305.01268 * 15 14 12 39 39 H 1.09002 * 109.46762 * 65.01552 * 15 14 12 40 40 H 0.96999 * 119.99602 * 185.00341 * 20 19 17 41 41 H 1.08992 * 117.50084 * 359.97438 * 25 16 15 42 42 H 1.08999 * 117.49601 * 145.02184 * 25 16 15 43 43 H 1.08995 * 117.50057 * 214.97774 * 26 16 15 44 44 H 1.09004 * 117.49888 * 359.97438 * 26 16 15 45 45 H 1.08991 * 109.47175 * 61.45207 * 29 27 9 46 46 H 1.08995 * 109.47204 * 181.45809 * 29 27 9 47 47 H 1.09012 * 109.46600 * 301.45401 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9792 0.8251 0.9034 7 6 4.1585 0.6126 -1.2715 8 6 5.5050 1.3444 -1.4526 9 7 5.4009 2.6307 -0.7482 10 6 6.3772 3.5549 -0.6520 11 8 6.1792 4.5853 -0.0424 12 6 7.7034 3.3106 -1.2960 13 8 7.9340 2.2425 -1.8241 14 7 8.6434 4.2764 -1.2903 15 6 9.9007 4.0791 -2.0160 16 6 10.8352 5.2606 -1.7476 17 6 10.7215 6.4117 -2.7134 18 1 10.0922 7.2566 -2.4749 19 6 11.4205 6.3865 -3.9015 20 7 12.1059 5.3159 -4.2386 21 14 11.3940 7.8730 -5.0325 22 1 11.9470 9.0503 -4.3159 23 1 12.2177 7.5938 -6.2362 24 1 9.9959 8.1564 -5.4449 25 6 12.2209 4.9499 -1.1780 26 6 11.1543 5.5916 -0.2883 27 6 4.0520 2.7418 -0.1638 28 1 3.3910 3.2885 -0.8362 29 6 4.1172 3.4362 1.1981 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.5097 0.7804 -2.1313 34 1 4.3175 -0.4540 -1.1126 35 1 6.3108 0.7500 -1.0219 36 1 5.6940 1.5163 -2.5122 37 1 8.4876 5.1020 -0.8057 38 1 10.3743 3.1573 -1.6786 39 1 9.6968 4.0128 -3.0847 40 1 12.6558 5.3238 -5.0376 41 1 12.4666 3.9041 -0.9942 42 1 13.0505 5.5783 -1.5019 43 1 11.2822 6.6419 -0.0268 44 1 10.6981 4.9679 0.4806 45 1 4.5111 4.4447 1.0732 46 1 3.1169 3.4874 1.6281 47 1 4.7701 2.8708 1.8632 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324173110.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:05 Heat of formation + Delta-G solvation = -139.606354 kcal Electronic energy + Delta-G solvation = -29695.852343 eV Core-core repulsion = 25458.314683 eV Total energy + Delta-G solvation = -4237.537660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.23138 -41.45999 -40.04051 -38.67186 -38.50188 -37.49482 -35.11869 -33.95644 -33.28930 -32.53852 -29.26580 -28.68437 -27.48780 -27.12871 -25.58291 -23.58467 -23.26321 -22.82885 -21.41620 -21.24944 -20.51243 -19.21063 -18.66976 -18.09500 -17.93695 -17.64676 -17.30656 -16.97440 -16.61209 -16.41728 -16.15306 -15.89108 -15.26526 -15.15083 -15.06571 -14.74241 -14.59389 -14.34413 -14.22363 -13.83874 -13.67687 -13.40818 -13.33061 -13.07421 -12.99656 -12.95497 -12.80398 -12.75814 -12.46522 -12.39771 -12.11523 -12.04046 -11.84571 -11.78943 -11.52595 -11.49536 -10.88659 -10.58372 -10.46832 -10.12031 -10.03289 -9.88444 -8.12622 -6.25099 0.35019 1.03820 1.09975 1.43089 1.44209 1.50987 1.70155 2.14714 2.42279 2.45783 3.05087 3.16481 3.27585 3.41691 3.55660 3.69043 3.95420 4.07105 4.13534 4.19049 4.22261 4.32790 4.35733 4.47867 4.53238 4.58060 4.58711 4.71515 4.74857 4.82166 4.87655 4.90668 4.95628 4.99987 5.01958 5.06685 5.25710 5.31124 5.34239 5.36525 5.59331 5.63827 5.75791 5.98998 6.28591 6.35590 6.62016 6.68597 6.81724 6.98710 7.44513 8.95359 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002279 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.872640 B =12285.083135 C =12414.054250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.482 3.518 4 O -0.530 6.530 5 C -0.089 4.089 6 H 0.150 0.850 7 C -0.107 4.107 8 C 0.102 3.898 9 N -0.588 5.588 10 C 0.528 3.472 11 O -0.533 6.533 12 C 0.499 3.501 13 O -0.543 6.543 14 N -0.676 5.676 15 C 0.180 3.820 16 C 0.000 4.000 17 C -0.511 4.511 18 H 0.055 0.945 19 C 0.028 3.972 20 N -0.902 5.902 21 Si 0.947 3.053 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.150 4.150 26 C -0.179 4.179 27 C 0.148 3.852 28 H 0.082 0.918 29 C -0.160 4.160 30 H 0.061 0.939 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.408 -13.910 9.575 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.325 3.675 4 O -0.419 6.419 5 C -0.109 4.109 6 H 0.167 0.833 7 C -0.145 4.145 8 C -0.020 4.020 9 N -0.323 5.323 10 C 0.311 3.689 11 O -0.410 6.410 12 C 0.279 3.721 13 O -0.421 6.421 14 N -0.327 5.327 15 C 0.057 3.943 16 C -0.001 4.001 17 C -0.549 4.549 18 H 0.073 0.927 19 C -0.173 4.173 20 N -0.540 5.540 21 Si 0.773 3.227 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.188 4.188 26 C -0.216 4.216 27 C 0.046 3.954 28 H 0.099 0.901 29 C -0.218 4.218 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.436 -13.871 9.308 26.394 hybrid contribution 0.145 1.447 -0.771 1.646 sum -20.291 -12.424 8.537 25.278 Atomic orbital electron populations 1.23587 0.74551 1.05853 1.02581 1.86497 1.24993 1.31994 1.83437 1.23259 0.91286 0.81500 0.71423 1.90705 1.67611 1.37346 1.46282 1.22300 0.87626 0.96566 1.04359 0.83266 1.22753 0.94111 1.02200 0.95428 1.22379 0.99165 0.82556 0.97878 1.48302 1.12360 1.19300 1.52317 1.19741 0.84664 0.83282 0.81245 1.90703 1.81358 1.26551 1.42413 1.20191 0.85645 0.84783 0.81448 1.90695 1.80599 1.24914 1.45934 1.45942 1.16685 1.19461 1.50592 1.20890 0.82002 0.97064 0.94394 1.19086 0.94320 0.94656 0.92041 1.20675 1.28763 1.03368 1.02079 0.92660 1.25635 0.95372 0.97864 0.98470 1.70092 1.29556 1.28288 1.26023 0.85796 0.77993 0.80478 0.78444 1.19650 1.21115 1.20122 1.22478 0.93273 0.98940 1.04139 1.22971 1.04473 1.00540 0.93613 1.21913 0.81788 0.95162 0.96571 0.90052 1.22119 1.02810 1.02313 0.94551 0.92010 0.84894 0.91883 0.89349 0.85131 0.89301 0.90785 0.75008 0.93153 0.93815 0.92969 0.90531 0.91653 0.89739 0.89121 0.91229 0.90587 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.35 -4.61 10.55 -51.40 -0.54 -5.16 16 3 C 0.48 7.95 7.27 71.24 0.52 8.47 16 4 O -0.53 -12.07 15.44 21.96 0.34 -11.73 16 5 C -0.09 -1.27 2.98 -9.98 -0.03 -1.30 16 6 H 0.15 1.52 8.06 -2.39 -0.02 1.51 16 7 C -0.11 -1.29 6.38 31.78 0.20 -1.09 16 8 C 0.10 2.02 5.50 86.73 0.48 2.50 16 9 N -0.59 -14.80 3.24 -788.81 -2.56 -17.36 16 10 C 0.53 16.88 7.69 87.27 0.67 17.55 16 11 O -0.53 -18.71 14.14 -3.24 -0.05 -18.75 16 12 C 0.50 18.03 7.84 87.27 0.68 18.71 16 13 O -0.54 -20.74 14.13 -3.26 -0.05 -20.79 16 14 N -0.68 -26.11 5.40 -464.39 -2.51 -28.62 16 15 C 0.18 8.01 5.71 86.38 0.49 8.51 16 16 C 0.00 -0.01 1.46 -52.93 -0.08 -0.09 16 17 C -0.51 -26.83 8.77 25.60 0.22 -26.61 16 18 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 19 C 0.03 1.48 5.40 84.65 0.46 1.94 16 20 N -0.90 -50.24 12.91 21.45 0.28 -49.96 16 21 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.15 -6.69 9.38 30.60 0.29 -6.40 16 26 C -0.18 -7.11 9.50 30.60 0.29 -6.82 16 27 C 0.15 3.17 2.85 45.64 0.13 3.30 16 28 H 0.08 1.96 7.54 -2.39 -0.02 1.95 16 29 C -0.16 -3.54 8.71 71.98 0.63 -2.91 16 30 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 31 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.57 8.13 -2.39 -0.02 0.55 16 33 H 0.09 1.01 8.03 -2.39 -0.02 0.99 16 34 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 1.81 7.47 -2.39 -0.02 1.79 16 36 H 0.07 1.66 7.81 -2.39 -0.02 1.64 16 37 H 0.41 15.45 7.70 -92.71 -0.71 14.73 16 38 H 0.05 2.22 7.83 -2.39 -0.02 2.20 16 39 H 0.04 2.23 8.04 -2.39 -0.02 2.21 16 40 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 41 H 0.08 3.19 8.03 -2.39 -0.02 3.17 16 42 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 45 H 0.07 1.92 5.89 -2.39 -0.01 1.91 16 46 H 0.08 1.52 8.00 -2.39 -0.02 1.50 16 47 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -65.83 392.33 3.37 -62.46 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.27 Total: 27.96 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.15 Total: 17.20 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -4.79 Total: -95.94 kcal Atomic # 8 Polarization: -56.13 SS G_CDS: -0.30 Total: -56.43 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -65.83 3.37 -62.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324173110.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.148 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds