Wall clock time and date at job start Tue Mar 31 2020 20:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.78187 * 2 1 4 4 C 1.54324 * 110.72149 * 236.76239 * 2 1 3 5 5 N 1.47025 * 107.27093 * 263.83221 * 4 2 1 6 6 C 1.34781 * 125.64868 * 181.02266 * 5 4 2 7 7 O 1.21275 * 119.99689 * 180.02562 * 6 5 4 8 8 C 1.50693 * 120.00098 * 0.02562 * 6 5 4 9 9 C 1.50696 * 109.47485 * 180.02562 * 8 6 5 10 10 C 1.38420 * 120.02571 * 89.99609 * 9 8 6 11 11 F 1.35093 * 120.01717 * 359.95616 * 10 9 8 12 12 C 1.38473 * 119.97025 * 179.97438 * 10 9 8 13 13 C 1.38212 * 120.02990 * 359.97438 * 12 10 9 14 14 C 1.38204 * 120.04557 * 0.26306 * 13 12 10 15 15 C 1.38423 * 120.02378 * 269.97996 * 9 8 6 16 16 F 1.35100 * 120.00804 * 0.03803 * 15 9 8 17 17 C 1.47420 * 108.70181 * 1.28288 * 5 4 2 18 18 C 1.55127 * 104.72252 * 335.55642 * 17 5 4 19 19 H 1.09002 * 111.22516 * 279.17310 * 18 17 5 20 20 C 1.53001 * 110.90781 * 155.27690 * 18 17 5 21 21 N 1.46498 * 109.47263 * 72.97448 * 20 18 17 22 22 C 1.36940 * 119.99806 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00104 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99784 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00125 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00033 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47121 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47249 * 120.00090 * 26 24 22 29 29 H 1.48496 * 109.47239 * 240.00091 * 26 24 22 30 30 H 1.08999 * 109.47286 * 181.78751 * 1 2 3 31 31 H 1.08997 * 109.46871 * 301.78841 * 1 2 3 32 32 H 1.09000 * 109.46850 * 61.78634 * 1 2 3 33 33 H 1.08997 * 109.88613 * 144.41284 * 4 2 1 34 34 H 1.09005 * 109.88491 * 23.24437 * 4 2 1 35 35 H 1.08993 * 109.47430 * 59.99885 * 8 6 5 36 36 H 1.09011 * 109.47179 * 300.00286 * 8 6 5 37 37 H 1.08007 * 119.98669 * 179.97438 * 12 10 9 38 38 H 1.08002 * 119.97395 * 179.97438 * 13 12 10 39 39 H 1.08008 * 119.98557 * 179.72231 * 14 13 12 40 40 H 1.09002 * 110.36677 * 94.48411 * 17 5 4 41 41 H 1.09003 * 110.36864 * 216.80659 * 17 5 4 42 42 H 1.09003 * 109.47395 * 192.97472 * 20 18 17 43 43 H 1.09001 * 109.47126 * 312.97514 * 20 18 17 44 44 H 0.97003 * 120.00139 * 0.02562 * 21 20 18 45 45 H 0.96998 * 120.00021 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 2.3716 -2.1532 -0.7390 6 6 2.8850 -3.1478 -1.4898 7 8 3.0883 -4.2368 -0.9964 8 6 3.2062 -2.9067 -2.9422 9 6 3.7628 -4.1685 -3.5498 10 6 2.9107 -5.0916 -4.1311 11 9 1.5796 -4.8625 -4.1532 12 6 3.4234 -6.2504 -4.6895 13 6 4.7853 -6.4852 -4.6672 14 6 5.6364 -5.5664 -4.0828 15 6 5.1265 -4.4050 -3.5274 16 9 5.9591 -3.5049 -2.9601 17 6 2.0075 -2.2525 0.6860 18 6 2.0790 -0.7955 1.2137 19 1 3.1059 -0.5069 1.4379 20 6 1.1816 -0.6141 2.4395 21 7 1.7914 -1.2787 3.5939 22 6 1.1638 -1.2503 4.8107 23 1 0.2195 -0.7377 4.9194 24 6 1.7414 -1.8806 5.9044 25 7 2.8925 -2.5049 5.7720 26 14 0.8857 -1.8414 7.5644 27 1 -0.3837 -1.0795 7.4490 28 1 0.5924 -3.2294 8.0030 29 1 1.7684 -1.1834 8.5609 30 1 -0.3634 -1.0271 0.0321 31 1 -0.3633 0.5414 0.8735 32 1 -0.3633 0.4858 -0.9056 33 1 2.9868 -0.3207 -1.5776 34 1 1.3263 -0.8255 -1.9978 35 1 3.9434 -2.1080 -3.0236 36 1 2.2983 -2.6184 -3.4722 37 1 2.7588 -6.9711 -5.1427 38 1 5.1841 -7.3894 -5.1027 39 1 6.7000 -5.7529 -4.0620 40 1 0.9974 -2.6479 0.7928 41 1 2.7207 -2.8831 1.2168 42 1 1.0663 0.4490 2.6514 43 1 0.2037 -1.0533 2.2422 44 1 2.6398 -1.7388 3.4963 45 1 3.2959 -2.9456 6.5361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325552796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:13 Heat of formation + Delta-G solvation = -89.885858 kcal Electronic energy + Delta-G solvation = -29224.976286 eV Core-core repulsion = 24878.507152 eV Total energy + Delta-G solvation = -4346.469134 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.26157 -49.23764 -40.28133 -39.12389 -37.87628 -34.66755 -33.34959 -32.73897 -31.15159 -30.58852 -29.33797 -27.95762 -26.55948 -25.26081 -23.33980 -23.17657 -22.34220 -21.67862 -19.31656 -19.19232 -18.39886 -17.66863 -17.44189 -16.84234 -16.38777 -16.14823 -15.91311 -15.83033 -15.50510 -15.20185 -14.84998 -14.68632 -14.58537 -13.93333 -13.89564 -13.57076 -13.22307 -13.05537 -12.93407 -12.87270 -12.49129 -12.32805 -12.29672 -12.17081 -11.86311 -11.78207 -11.69908 -11.53417 -11.02012 -10.84251 -10.53323 -10.39673 -10.32208 -9.97527 -9.89340 -9.66482 -9.16381 -9.03713 -8.85808 -8.54528 -6.90325 -5.73787 -3.03097 0.64188 0.68593 2.65264 2.87966 3.18827 3.45294 3.50387 3.53063 3.61056 4.07962 4.10664 4.31508 4.41762 4.47140 4.54735 4.61638 4.82334 4.86829 4.89107 5.06623 5.09459 5.29344 5.41300 5.44853 5.49021 5.53233 5.56435 5.61268 5.61919 5.70984 5.80376 5.82805 5.87675 5.97861 6.06857 6.16519 6.21808 6.34475 6.39967 6.44154 6.48228 6.70490 6.84413 7.57418 7.72190 8.19314 8.44395 9.55610 10.13041 10.47119 11.48967 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.002553 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.909579 B =10966.363138 C =11742.697759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.089 0.911 4 C 0.102 3.898 5 N -0.616 5.616 6 C 0.529 3.471 7 O -0.531 6.531 8 C -0.099 4.099 9 C -0.136 4.136 10 C 0.142 3.858 11 F -0.129 7.129 12 C -0.164 4.164 13 C -0.062 4.062 14 C -0.164 4.164 15 C 0.143 3.857 16 F -0.127 7.127 17 C 0.117 3.883 18 C -0.102 4.102 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.734 5.734 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.025 0.975 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.116 -0.857 -27.520 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.350 5.350 6 C 0.317 3.683 7 O -0.407 6.407 8 C -0.138 4.138 9 C -0.138 4.138 10 C 0.123 3.877 11 F -0.107 7.107 12 C -0.183 4.183 13 C -0.080 4.080 14 C -0.182 4.182 15 C 0.123 3.877 16 F -0.106 7.106 17 C -0.004 4.004 18 C -0.121 4.121 19 H 0.104 0.896 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.106 -1.424 -27.145 27.264 hybrid contribution -0.215 0.098 1.072 1.098 sum 1.891 -1.326 -26.073 26.175 Atomic orbital electron populations 1.21841 0.94012 1.02424 1.01867 1.22187 0.96663 0.99156 0.93624 0.89224 1.22193 0.99947 0.82380 0.97547 1.48523 1.62896 1.11392 1.12230 1.19894 0.77392 0.83643 0.87384 1.90749 1.52786 1.23677 1.73506 1.20485 1.03705 0.95998 0.93634 1.19298 0.92303 0.98395 1.03840 1.17147 0.77310 0.94476 0.98816 1.91521 1.30315 1.94481 1.94370 1.21180 0.96767 0.96965 1.03395 1.20843 0.91934 0.98669 0.96586 1.21191 1.01814 0.93537 1.01701 1.17161 0.86440 0.88336 0.95717 1.91534 1.70695 1.66019 1.82326 1.22380 1.01225 0.97850 0.78965 1.22664 1.01175 0.93453 0.94829 0.89615 1.20633 0.94150 0.95936 0.85499 1.42402 1.25625 1.64523 1.05255 1.19246 1.03009 1.28310 0.86553 0.91129 1.24756 0.97316 1.00764 0.98148 1.69672 1.18126 1.40041 1.30134 0.86124 0.78517 0.77195 0.84392 1.20574 1.21868 1.21895 0.92325 0.91400 0.92885 0.91446 0.91366 0.87224 0.87281 0.83931 0.83846 0.83885 0.91105 0.89925 0.95875 0.95713 0.78263 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.91 37.16 0.29 -1.29 16 2 C -0.10 -1.12 3.47 -88.79 -0.31 -1.43 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.10 1.09 6.07 -3.06 -0.02 1.07 16 5 N -0.62 -8.91 3.32 -170.38 -0.57 -9.48 16 6 C 0.53 8.20 7.84 -10.99 -0.09 8.12 16 7 O -0.53 -10.53 16.29 5.56 0.09 -10.44 16 8 C -0.10 -1.11 4.67 -29.04 -0.14 -1.24 16 9 C -0.14 -1.61 4.39 -104.49 -0.46 -2.07 16 10 C 0.14 1.58 7.24 -39.43 -0.29 1.30 16 11 F -0.13 -1.53 16.48 2.25 0.04 -1.49 16 12 C -0.16 -1.41 10.02 -39.50 -0.40 -1.80 16 13 C -0.06 -0.45 10.04 -39.60 -0.40 -0.85 16 14 C -0.16 -1.43 10.02 -39.51 -0.40 -1.83 16 15 C 0.14 1.63 7.24 -39.43 -0.29 1.34 16 16 F -0.13 -1.57 16.48 2.25 0.04 -1.54 16 17 C 0.12 2.00 6.00 -2.41 -0.01 1.99 16 18 C -0.10 -1.61 2.93 -88.36 -0.26 -1.87 16 19 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 20 C 0.17 3.22 4.54 -4.04 -0.02 3.20 16 21 N -0.73 -18.63 5.55 -59.91 -0.33 -18.96 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 26 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H 0.06 0.72 7.32 -51.93 -0.38 0.33 16 31 H 0.07 0.79 7.12 -51.93 -0.37 0.42 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 35 H 0.11 1.03 7.64 -51.93 -0.40 0.63 16 36 H 0.11 1.00 7.64 -51.92 -0.40 0.60 16 37 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.07 1.26 7.46 -51.93 -0.39 0.87 16 41 H 0.08 1.66 8.03 -51.93 -0.42 1.24 16 42 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 43 H 0.03 0.49 6.94 -51.93 -0.36 0.13 16 44 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 45 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 378.52 15.07 5.70 5.70 Total: -1.00 -34.75 378.52 -8.69 -43.44 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.35 Total: 5.85 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -3.01 Total: -2.77 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.17 Total: -56.45 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.75 -8.69 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325552796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.444 kcal (2) G-P(sol) polarization free energy of solvation -34.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds