Wall clock time and date at job start Tue Mar 31 2020 20:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.78187 * 2 1 4 4 C 1.54324 * 110.72149 * 236.76239 * 2 1 3 5 5 N 1.47025 * 107.27093 * 263.83221 * 4 2 1 6 6 C 1.34781 * 125.64868 * 181.02266 * 5 4 2 7 7 O 1.21275 * 119.99689 * 180.02562 * 6 5 4 8 8 C 1.50693 * 120.00098 * 0.02562 * 6 5 4 9 9 C 1.50696 * 109.47485 * 180.02562 * 8 6 5 10 10 C 1.38420 * 120.02571 * 89.99609 * 9 8 6 11 11 F 1.35093 * 120.01717 * 359.95616 * 10 9 8 12 12 C 1.38473 * 119.97025 * 179.97438 * 10 9 8 13 13 C 1.38212 * 120.02990 * 359.97438 * 12 10 9 14 14 C 1.38204 * 120.04557 * 0.26306 * 13 12 10 15 15 C 1.38423 * 120.02378 * 269.97996 * 9 8 6 16 16 F 1.35100 * 120.00804 * 0.03803 * 15 9 8 17 17 C 1.47420 * 108.70181 * 1.28288 * 5 4 2 18 18 C 1.55127 * 104.72252 * 335.55642 * 17 5 4 19 19 H 1.09002 * 111.22516 * 279.17310 * 18 17 5 20 20 C 1.53001 * 110.90781 * 155.27690 * 18 17 5 21 21 N 1.46498 * 109.47263 * 72.97448 * 20 18 17 22 22 C 1.36940 * 119.99806 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00104 * 359.97438 * 22 21 20 24 24 C 1.38817 * 119.99784 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00125 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00033 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47121 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47249 * 120.00090 * 26 24 22 29 29 H 1.48496 * 109.47239 * 240.00091 * 26 24 22 30 30 H 1.08999 * 109.47286 * 181.78751 * 1 2 3 31 31 H 1.08997 * 109.46871 * 301.78841 * 1 2 3 32 32 H 1.09000 * 109.46850 * 61.78634 * 1 2 3 33 33 H 1.08997 * 109.88613 * 144.41284 * 4 2 1 34 34 H 1.09005 * 109.88491 * 23.24437 * 4 2 1 35 35 H 1.08993 * 109.47430 * 59.99885 * 8 6 5 36 36 H 1.09011 * 109.47179 * 300.00286 * 8 6 5 37 37 H 1.08007 * 119.98669 * 179.97438 * 12 10 9 38 38 H 1.08002 * 119.97395 * 179.97438 * 13 12 10 39 39 H 1.08008 * 119.98557 * 179.72231 * 14 13 12 40 40 H 1.09002 * 110.36677 * 94.48411 * 17 5 4 41 41 H 1.09003 * 110.36864 * 216.80659 * 17 5 4 42 42 H 1.09003 * 109.47395 * 192.97472 * 20 18 17 43 43 H 1.09001 * 109.47126 * 312.97514 * 20 18 17 44 44 H 0.97003 * 120.00139 * 0.02562 * 21 20 18 45 45 H 0.96998 * 120.00021 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7911 -1.2073 5 7 2.3716 -2.1532 -0.7390 6 6 2.8850 -3.1478 -1.4898 7 8 3.0883 -4.2368 -0.9964 8 6 3.2062 -2.9067 -2.9422 9 6 3.7628 -4.1685 -3.5498 10 6 2.9107 -5.0916 -4.1311 11 9 1.5796 -4.8625 -4.1532 12 6 3.4234 -6.2504 -4.6895 13 6 4.7853 -6.4852 -4.6672 14 6 5.6364 -5.5664 -4.0828 15 6 5.1265 -4.4050 -3.5274 16 9 5.9591 -3.5049 -2.9601 17 6 2.0075 -2.2525 0.6860 18 6 2.0790 -0.7955 1.2137 19 1 3.1059 -0.5069 1.4379 20 6 1.1816 -0.6141 2.4395 21 7 1.7914 -1.2787 3.5939 22 6 1.1638 -1.2503 4.8107 23 1 0.2195 -0.7377 4.9194 24 6 1.7414 -1.8806 5.9044 25 7 2.8925 -2.5049 5.7720 26 14 0.8857 -1.8414 7.5644 27 1 -0.3837 -1.0795 7.4490 28 1 0.5924 -3.2294 8.0030 29 1 1.7684 -1.1834 8.5609 30 1 -0.3634 -1.0271 0.0321 31 1 -0.3633 0.5414 0.8735 32 1 -0.3633 0.4858 -0.9056 33 1 2.9868 -0.3207 -1.5776 34 1 1.3263 -0.8255 -1.9978 35 1 3.9434 -2.1080 -3.0236 36 1 2.2983 -2.6184 -3.4722 37 1 2.7588 -6.9711 -5.1427 38 1 5.1841 -7.3894 -5.1027 39 1 6.7000 -5.7529 -4.0620 40 1 0.9974 -2.6479 0.7928 41 1 2.7207 -2.8831 1.2168 42 1 1.0663 0.4490 2.6514 43 1 0.2037 -1.0533 2.2422 44 1 2.6398 -1.7388 3.4963 45 1 3.2959 -2.9456 6.5361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325552796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:12 Heat of formation + Delta-G solvation = -111.575037 kcal Electronic energy + Delta-G solvation = -29225.916799 eV Core-core repulsion = 24878.507152 eV Total energy + Delta-G solvation = -4347.409647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.08987 -50.08438 -41.43619 -39.95017 -39.03927 -36.47651 -34.47452 -33.92438 -32.84455 -31.28740 -30.73153 -29.04849 -27.50798 -26.88545 -24.97644 -23.91453 -23.45191 -22.86233 -20.56804 -20.37405 -19.21964 -19.05153 -18.48095 -18.31827 -17.41353 -17.08352 -16.86548 -16.67387 -16.60713 -16.35811 -16.23565 -15.87470 -15.49565 -15.35873 -15.32636 -14.76338 -14.55473 -14.23786 -14.11471 -13.81027 -13.76284 -13.44244 -13.35758 -13.08368 -13.01261 -12.95307 -12.80398 -12.65922 -12.64999 -12.36686 -12.12646 -11.90860 -11.66638 -11.55185 -11.45727 -11.12640 -10.94372 -9.93481 -9.77429 -9.74295 -9.01457 -7.96291 -5.25789 -0.08424 -0.03836 1.45442 1.46946 1.47739 1.56975 1.86239 2.38117 2.54597 2.86726 3.27236 3.33327 3.38389 3.39320 3.51693 3.59978 3.77941 3.82909 3.86816 4.12401 4.19862 4.21351 4.30492 4.31744 4.33408 4.52985 4.55252 4.65922 4.76623 4.79723 4.80319 4.82247 4.91728 5.00481 5.02072 5.02956 5.11396 5.18176 5.20614 5.25574 5.31345 5.48858 5.50945 5.75708 6.25500 6.43855 7.00940 7.31116 8.07461 8.29050 9.27718 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015100 B = 0.002553 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.909579 B =10966.363138 C =11742.697759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 H 0.117 0.883 4 C 0.099 3.901 5 N -0.615 5.615 6 C 0.520 3.480 7 O -0.587 6.587 8 C -0.088 4.088 9 C -0.158 4.158 10 C 0.117 3.883 11 F -0.139 7.139 12 C -0.162 4.162 13 C -0.052 4.052 14 C -0.163 4.163 15 C 0.115 3.885 16 F -0.140 7.140 17 C 0.123 3.877 18 C -0.095 4.095 19 H 0.075 0.925 20 C 0.167 3.833 21 N -0.750 5.750 22 C -0.242 4.242 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.975 3.025 27 H -0.262 1.262 28 H -0.296 1.296 29 H -0.292 1.292 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.167 0.833 38 H 0.184 0.816 39 H 0.165 0.835 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.027 0.973 44 H 0.370 0.630 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 0.179 -29.970 30.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 H 0.135 0.865 4 C -0.022 4.022 5 N -0.348 5.348 6 C 0.310 3.690 7 O -0.467 6.467 8 C -0.127 4.127 9 C -0.160 4.160 10 C 0.098 3.902 11 F -0.117 7.117 12 C -0.180 4.180 13 C -0.069 4.069 14 C -0.182 4.182 15 C 0.096 3.904 16 F -0.119 7.119 17 C 0.000 4.000 18 C -0.114 4.114 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.392 5.392 22 C -0.374 4.374 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.804 3.196 27 H -0.186 1.186 28 H -0.223 1.223 29 H -0.220 1.220 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.185 0.815 38 H 0.202 0.798 39 H 0.183 0.817 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.202 0.798 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.359 -0.316 -29.645 29.677 hybrid contribution -0.011 -0.260 1.758 1.777 sum 1.347 -0.576 -27.887 27.926 Atomic orbital electron populations 1.21847 0.93380 1.01592 1.03218 1.22229 0.97087 0.99894 0.91173 0.86462 1.22520 1.02171 0.79859 0.97698 1.48619 1.62263 1.13057 1.10892 1.20757 0.76330 0.82876 0.89012 1.90709 1.55101 1.26003 1.74882 1.20491 1.05245 0.96743 0.90242 1.19454 0.92792 0.99081 1.04697 1.17479 0.76970 0.95613 1.00154 1.91486 1.30959 1.94666 1.94605 1.21586 0.97881 0.96271 1.02299 1.21334 0.91150 0.99331 0.95101 1.21583 1.03323 0.92620 1.00633 1.17526 0.86486 0.89361 0.97056 1.91491 1.70963 1.66633 1.82805 1.22074 0.99091 0.97996 0.80872 1.22496 1.00165 0.93496 0.95255 0.90640 1.20788 0.94537 0.95589 0.85044 1.42679 1.25272 1.64889 1.06352 1.19698 1.03031 1.27036 0.87605 0.90229 1.25633 0.98273 1.01277 1.02029 1.69847 1.19966 1.41677 1.30855 0.85043 0.78013 0.76871 0.79664 1.18639 1.22338 1.21953 0.94101 0.92146 0.89622 0.88751 0.88329 0.85259 0.84977 0.81539 0.79846 0.81728 0.92426 0.94395 0.94773 0.95488 0.79848 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 7.91 71.98 0.57 -2.20 16 2 C -0.08 -1.73 3.47 -9.61 -0.03 -1.77 16 3 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 4 C 0.10 1.81 6.07 86.73 0.53 2.34 16 5 N -0.62 -17.78 3.32 -811.36 -2.70 -20.47 16 6 C 0.52 16.45 7.84 87.65 0.69 17.13 16 7 O -0.59 -24.65 16.29 -3.01 -0.05 -24.70 16 8 C -0.09 -1.90 4.67 29.10 0.14 -1.77 16 9 C -0.16 -3.69 4.39 -19.78 -0.09 -3.78 16 10 C 0.12 2.55 7.24 22.37 0.16 2.71 16 11 F -0.14 -3.25 16.48 44.97 0.74 -2.51 16 12 C -0.16 -2.47 10.02 22.32 0.22 -2.25 16 13 C -0.05 -0.61 10.04 22.26 0.22 -0.39 16 14 C -0.16 -2.59 10.02 22.32 0.22 -2.36 16 15 C 0.12 2.58 7.24 22.37 0.16 2.75 16 16 F -0.14 -3.50 16.48 44.97 0.74 -2.76 16 17 C 0.12 4.41 6.00 86.93 0.52 4.93 16 18 C -0.09 -3.00 2.93 -9.33 -0.03 -3.02 16 19 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 20 C 0.17 6.51 4.54 86.38 0.39 6.90 16 21 N -0.75 -39.18 5.55 -343.45 -1.91 -41.09 16 22 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 23 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 25 N -0.97 -62.05 13.06 21.65 0.28 -61.77 16 26 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 27 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 29 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 30 H 0.04 0.94 7.32 -2.39 -0.02 0.92 16 31 H 0.06 1.27 7.12 -2.39 -0.02 1.25 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.10 1.30 7.84 -2.38 -0.02 1.28 16 35 H 0.13 2.22 7.64 -2.39 -0.02 2.20 16 36 H 0.13 2.17 7.64 -2.38 -0.02 2.15 16 37 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 38 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 39 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.06 2.18 7.46 -2.39 -0.02 2.16 16 41 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 42 H 0.03 1.29 8.05 -2.39 -0.02 1.27 16 43 H 0.03 1.06 6.94 -2.39 -0.02 1.05 16 44 H 0.37 21.08 7.67 -92.71 -0.71 20.37 16 45 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -80.59 378.52 4.43 -76.16 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.31 Total: 25.77 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 4.99 Total: 1.97 kcal Atomic # 7 Polarization: -119.01 SS G_CDS: -4.32 Total: -123.33 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.05 Total: -24.70 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 1.48 Total: -5.27 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -80.59 4.43 -76.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325552796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.413 kcal (2) G-P(sol) polarization free energy of solvation -80.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds