Wall clock time and date at job start Tue Mar 31 2020 20:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.37117 * 2 1 4 4 C 1.54007 * 110.32465 * 122.19080 * 2 1 3 5 5 N 1.47485 * 107.08191 * 117.58802 * 4 2 1 6 6 C 1.34777 * 127.02864 * 205.41110 * 5 4 2 7 7 O 1.21280 * 120.00095 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00208 * 0.02562 * 6 5 4 9 9 C 1.50695 * 109.47075 * 180.02562 * 8 6 5 10 10 C 1.38212 * 120.00078 * 99.99987 * 9 8 6 11 11 C 1.38430 * 120.00102 * 179.97438 * 10 9 8 12 12 F 1.35097 * 120.00074 * 179.97438 * 11 10 9 13 13 C 1.38477 * 120.00004 * 359.97438 * 11 10 9 14 14 C 1.38165 * 119.99544 * 0.04264 * 13 11 10 15 15 C 1.38426 * 119.99974 * 279.72143 * 9 8 6 16 16 F 1.35099 * 120.00025 * 0.02562 * 15 9 8 17 17 C 1.48114 * 105.93528 * 25.44416 * 5 4 2 18 18 C 1.54614 * 110.32524 * 237.80837 * 2 1 3 19 19 H 1.08994 * 110.74381 * 337.59806 * 18 2 1 20 20 C 1.53007 * 110.73891 * 100.92420 * 18 2 1 21 21 N 1.46502 * 109.47144 * 184.99818 * 20 18 2 22 22 C 1.36936 * 119.99634 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00368 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99866 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99671 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00087 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47026 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46901 * 120.00241 * 26 24 22 29 29 H 1.48501 * 109.47091 * 239.99988 * 26 24 22 30 30 H 1.09005 * 109.47215 * 299.26658 * 1 2 3 31 31 H 1.09004 * 109.46696 * 59.26422 * 1 2 3 32 32 H 1.08994 * 109.47338 * 179.26151 * 1 2 3 33 33 H 1.09003 * 109.90984 * 236.94740 * 4 2 1 34 34 H 1.08996 * 109.91508 * 358.22351 * 4 2 1 35 35 H 1.09007 * 109.46705 * 299.99926 * 8 6 5 36 36 H 1.09000 * 109.47065 * 59.99829 * 8 6 5 37 37 H 1.07992 * 119.99819 * 359.95165 * 10 9 8 38 38 H 1.07990 * 120.00306 * 180.02562 * 13 11 10 39 39 H 1.08003 * 119.99659 * 179.97438 * 14 13 11 40 40 H 1.08998 * 110.66152 * 79.15179 * 17 5 4 41 41 H 1.08999 * 110.65867 * 202.09913 * 17 5 4 42 42 H 1.08995 * 109.46655 * 304.99964 * 20 18 2 43 43 H 1.09004 * 109.47090 * 64.99912 * 20 18 2 44 44 H 0.97000 * 119.99895 * 359.97438 * 21 20 18 45 45 H 0.97004 * 119.99961 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7694 1.2222 5 7 2.8276 -1.9224 0.7084 6 6 3.0623 -3.0881 1.3429 7 8 3.7107 -3.9557 0.7973 8 6 2.5191 -3.3134 2.7305 9 6 2.9200 -4.6846 3.2103 10 6 3.9926 -4.8297 4.0697 11 6 4.3606 -6.0892 4.5109 12 9 5.4094 -6.2311 5.3505 13 6 3.6536 -7.2036 4.0916 14 6 2.5815 -7.0584 3.2322 15 6 2.2103 -5.7981 2.7949 16 9 1.1587 -5.6557 1.9589 17 6 3.2835 -1.5370 -0.6471 18 6 2.0671 -0.7724 -1.2270 19 1 1.3175 -1.4684 -1.6034 20 6 2.5095 0.1961 -2.3258 21 7 2.9004 -0.5622 -3.5168 22 6 3.3354 0.0967 -4.6356 23 1 3.3908 1.1752 -4.6399 24 6 3.7062 -0.6218 -5.7640 25 7 3.6391 -1.9363 -5.7586 26 14 4.2990 0.2770 -7.2905 27 1 4.2813 1.7407 -7.0412 28 1 5.6835 -0.1533 -7.6118 29 1 3.4040 -0.0422 -8.4317 30 1 -0.3634 0.5024 0.8965 31 1 -0.3633 0.5253 -0.8834 32 1 -0.3634 -1.0275 -0.0132 33 1 2.7180 -0.1244 1.8101 34 1 1.2334 -1.1175 1.8348 35 1 2.9239 -2.5597 3.4060 36 1 1.4319 -3.2381 2.7117 37 1 4.5440 -3.9606 4.3967 38 1 3.9403 -8.1861 4.4361 39 1 2.0303 -7.9276 2.9049 40 1 4.1553 -0.8853 -0.5888 41 1 3.5054 -2.4215 -1.2442 42 1 1.6851 0.8642 -2.5747 43 1 3.3584 0.7821 -1.9734 44 1 2.8516 -1.5310 -3.5126 45 1 3.8979 -2.4384 -6.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325553784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:25 Heat of formation + Delta-G solvation = -91.451551 kcal Electronic energy + Delta-G solvation = -28873.838816 eV Core-core repulsion = 24527.301789 eV Total energy + Delta-G solvation = -4346.537027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.20934 -49.12888 -40.28660 -39.14403 -37.78267 -34.66196 -33.37877 -32.77604 -31.41036 -30.51475 -29.41161 -28.01441 -26.38522 -25.28448 -23.44945 -23.18772 -22.25486 -21.21797 -19.93850 -19.34413 -17.91361 -17.54844 -17.44903 -17.32148 -16.86625 -16.06700 -16.02553 -15.56418 -15.33349 -14.83095 -14.63651 -14.55601 -14.34058 -14.12227 -13.83641 -13.59636 -13.35899 -13.22144 -13.03754 -12.98313 -12.86042 -12.48065 -12.22527 -12.10918 -11.93498 -11.85596 -11.38527 -11.29662 -11.12665 -10.86582 -10.58180 -10.47764 -10.36361 -10.00121 -9.92788 -9.66701 -9.42226 -8.87842 -8.80234 -8.61780 -6.91623 -5.74549 -3.04125 0.62358 0.69214 2.61784 2.82570 3.17156 3.44558 3.49622 3.52371 3.80077 3.90561 4.10743 4.27794 4.41599 4.55386 4.59500 4.60882 4.74823 4.82766 4.90965 4.96071 5.09097 5.24497 5.33646 5.42407 5.49421 5.52328 5.58974 5.59370 5.65120 5.71818 5.76019 5.77135 5.80382 5.95961 6.06189 6.11254 6.18145 6.19292 6.39980 6.44759 6.48047 6.70924 6.83817 7.57681 7.71237 8.16016 8.43464 9.54739 10.11992 10.46161 11.48066 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.002428 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.210499 B =11527.252334 C =12388.802709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.532 3.468 7 O -0.530 6.530 8 C -0.099 4.099 9 C -0.071 4.071 10 C -0.114 4.114 11 C 0.089 3.911 12 F -0.136 7.136 13 C -0.125 4.125 14 C -0.124 4.124 15 C 0.110 3.890 16 F -0.129 7.129 17 C 0.115 3.885 18 C -0.102 4.102 19 H 0.084 0.916 20 C 0.165 3.835 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.550 -4.119 26.045 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.355 5.355 6 C 0.319 3.681 7 O -0.406 6.406 8 C -0.139 4.139 9 C -0.072 4.072 10 C -0.133 4.133 11 C 0.069 3.931 12 F -0.115 7.115 13 C -0.144 4.144 14 C -0.142 4.142 15 C 0.090 3.910 16 F -0.108 7.108 17 C -0.007 4.007 18 C -0.121 4.121 19 H 0.102 0.898 20 C 0.037 3.963 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.041 0.959 43 H 0.039 0.961 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.129 -4.544 25.691 26.589 hybrid contribution 0.337 0.189 -0.941 1.017 sum -4.792 -4.355 24.750 25.583 Atomic orbital electron populations 1.21837 0.94126 1.02001 1.01931 1.22089 0.96375 0.99753 0.93803 0.89376 1.22256 0.95322 0.87510 0.96913 1.48843 1.53590 1.14548 1.18522 1.19881 0.80549 0.80709 0.86920 1.90769 1.39999 1.42316 1.67481 1.20601 1.03586 0.94477 0.95229 1.19152 0.96000 0.94087 0.97990 1.20847 0.97024 0.96941 0.98502 1.17566 0.87581 0.94185 0.93753 1.91518 1.54687 1.96576 1.68684 1.20982 0.95824 0.98700 0.98874 1.20976 0.98212 0.96410 0.98652 1.17480 0.87291 0.93805 0.92410 1.91532 1.53949 1.96519 1.68779 1.22587 0.96763 1.00120 0.81201 1.22578 0.97039 0.97839 0.94674 0.89778 1.20626 0.96546 0.92729 0.86392 1.42387 1.79183 1.05993 1.10189 1.19243 1.35869 0.91276 0.90804 0.91133 1.24761 1.02378 0.95495 0.98341 1.69679 1.54327 1.04555 1.29351 0.86125 0.78113 0.78594 0.83396 1.20576 1.21872 1.21880 0.92745 0.91819 0.92604 0.91436 0.90897 0.87244 0.87287 0.83763 0.83697 0.83527 0.90725 0.89316 0.95908 0.96120 0.78198 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.89 37.16 0.33 -1.06 16 2 C -0.10 -1.12 3.17 -89.25 -0.28 -1.40 16 3 H 0.09 0.91 7.85 -51.93 -0.41 0.51 16 4 C 0.10 1.00 6.42 -2.98 -0.02 0.99 16 5 N -0.62 -8.39 3.29 -169.76 -0.56 -8.95 16 6 C 0.53 7.62 7.88 -10.98 -0.09 7.53 16 7 O -0.53 -10.03 16.16 5.56 0.09 -9.94 16 8 C -0.10 -0.96 4.64 -29.03 -0.13 -1.09 16 9 C -0.07 -0.76 4.42 -104.56 -0.46 -1.22 16 10 C -0.11 -1.10 9.65 -39.52 -0.38 -1.48 16 11 C 0.09 0.86 7.30 -39.42 -0.29 0.57 16 12 F -0.14 -1.38 17.27 2.25 0.04 -1.34 16 13 C -0.12 -1.06 10.02 -39.52 -0.40 -1.46 16 14 C -0.12 -1.14 10.02 -39.52 -0.40 -1.53 16 15 C 0.11 1.24 7.14 -39.43 -0.28 0.96 16 16 F -0.13 -1.65 16.66 2.25 0.04 -1.62 16 17 C 0.11 1.87 6.45 -2.13 -0.01 1.86 16 18 C -0.10 -1.57 2.62 -88.74 -0.23 -1.81 16 19 H 0.08 1.43 7.86 -51.93 -0.41 1.02 16 20 C 0.17 3.17 5.58 -4.04 -0.02 3.15 16 21 N -0.73 -18.46 5.52 -59.91 -0.33 -18.79 16 22 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 23 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 26 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.55 7.08 -51.93 -0.37 0.19 16 35 H 0.11 0.72 8.00 -51.93 -0.42 0.30 16 36 H 0.11 0.88 7.71 -51.93 -0.40 0.48 16 37 H 0.14 1.10 8.04 -52.49 -0.42 0.68 16 38 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.15 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 41 H 0.09 1.74 7.85 -51.93 -0.41 1.33 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.40 7.99 -51.93 -0.42 -0.02 16 44 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 45 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -34.42 383.47 -8.63 -43.05 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.47 Total: 5.49 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.91 Total: -3.36 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -0.16 Total: -55.63 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.42 -8.63 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325553784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.400 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds