Wall clock time and date at job start Tue Mar 31 2020 20:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.37117 * 2 1 4 4 C 1.54007 * 110.32465 * 122.19080 * 2 1 3 5 5 N 1.47485 * 107.08191 * 117.58802 * 4 2 1 6 6 C 1.34777 * 127.02864 * 205.41110 * 5 4 2 7 7 O 1.21280 * 120.00095 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00208 * 0.02562 * 6 5 4 9 9 C 1.50695 * 109.47075 * 180.02562 * 8 6 5 10 10 C 1.38212 * 120.00078 * 99.99987 * 9 8 6 11 11 C 1.38430 * 120.00102 * 179.97438 * 10 9 8 12 12 F 1.35097 * 120.00074 * 179.97438 * 11 10 9 13 13 C 1.38477 * 120.00004 * 359.97438 * 11 10 9 14 14 C 1.38165 * 119.99544 * 0.04264 * 13 11 10 15 15 C 1.38426 * 119.99974 * 279.72143 * 9 8 6 16 16 F 1.35099 * 120.00025 * 0.02562 * 15 9 8 17 17 C 1.48114 * 105.93528 * 25.44416 * 5 4 2 18 18 C 1.54614 * 110.32524 * 237.80837 * 2 1 3 19 19 H 1.08994 * 110.74381 * 337.59806 * 18 2 1 20 20 C 1.53007 * 110.73891 * 100.92420 * 18 2 1 21 21 N 1.46502 * 109.47144 * 184.99818 * 20 18 2 22 22 C 1.36936 * 119.99634 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00368 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.99866 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99671 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00087 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47026 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46901 * 120.00241 * 26 24 22 29 29 H 1.48501 * 109.47091 * 239.99988 * 26 24 22 30 30 H 1.09005 * 109.47215 * 299.26658 * 1 2 3 31 31 H 1.09004 * 109.46696 * 59.26422 * 1 2 3 32 32 H 1.08994 * 109.47338 * 179.26151 * 1 2 3 33 33 H 1.09003 * 109.90984 * 236.94740 * 4 2 1 34 34 H 1.08996 * 109.91508 * 358.22351 * 4 2 1 35 35 H 1.09007 * 109.46705 * 299.99926 * 8 6 5 36 36 H 1.09000 * 109.47065 * 59.99829 * 8 6 5 37 37 H 1.07992 * 119.99819 * 359.95165 * 10 9 8 38 38 H 1.07990 * 120.00306 * 180.02562 * 13 11 10 39 39 H 1.08003 * 119.99659 * 179.97438 * 14 13 11 40 40 H 1.08998 * 110.66152 * 79.15179 * 17 5 4 41 41 H 1.08999 * 110.65867 * 202.09913 * 17 5 4 42 42 H 1.08995 * 109.46655 * 304.99964 * 20 18 2 43 43 H 1.09004 * 109.47090 * 64.99912 * 20 18 2 44 44 H 0.97000 * 119.99895 * 359.97438 * 21 20 18 45 45 H 0.97004 * 119.99961 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0649 -0.7694 1.2222 5 7 2.8276 -1.9224 0.7084 6 6 3.0623 -3.0881 1.3429 7 8 3.7107 -3.9557 0.7973 8 6 2.5191 -3.3134 2.7305 9 6 2.9200 -4.6846 3.2103 10 6 3.9926 -4.8297 4.0697 11 6 4.3606 -6.0892 4.5109 12 9 5.4094 -6.2311 5.3505 13 6 3.6536 -7.2036 4.0916 14 6 2.5815 -7.0584 3.2322 15 6 2.2103 -5.7981 2.7949 16 9 1.1587 -5.6557 1.9589 17 6 3.2835 -1.5370 -0.6471 18 6 2.0671 -0.7724 -1.2270 19 1 1.3175 -1.4684 -1.6034 20 6 2.5095 0.1961 -2.3258 21 7 2.9004 -0.5622 -3.5168 22 6 3.3354 0.0967 -4.6356 23 1 3.3908 1.1752 -4.6399 24 6 3.7062 -0.6218 -5.7640 25 7 3.6391 -1.9363 -5.7586 26 14 4.2990 0.2770 -7.2905 27 1 4.2813 1.7407 -7.0412 28 1 5.6835 -0.1533 -7.6118 29 1 3.4040 -0.0422 -8.4317 30 1 -0.3634 0.5024 0.8965 31 1 -0.3633 0.5253 -0.8834 32 1 -0.3634 -1.0275 -0.0132 33 1 2.7180 -0.1244 1.8101 34 1 1.2334 -1.1175 1.8348 35 1 2.9239 -2.5597 3.4060 36 1 1.4319 -3.2381 2.7117 37 1 4.5440 -3.9606 4.3967 38 1 3.9403 -8.1861 4.4361 39 1 2.0303 -7.9276 2.9049 40 1 4.1553 -0.8853 -0.5888 41 1 3.5054 -2.4215 -1.2442 42 1 1.6851 0.8642 -2.5747 43 1 3.3584 0.7821 -1.9734 44 1 2.8516 -1.5310 -3.5126 45 1 3.8979 -2.4384 -6.5472 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325553784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:23 Heat of formation + Delta-G solvation = -112.521438 kcal Electronic energy + Delta-G solvation = -28874.752475 eV Core-core repulsion = 24527.301789 eV Total energy + Delta-G solvation = -4347.450686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -50.00710 -49.96102 -41.33874 -39.97905 -38.90396 -36.45691 -34.37746 -33.89600 -33.03898 -31.29367 -30.79210 -29.04675 -27.23329 -26.84939 -25.00435 -24.07406 -23.19593 -22.46798 -21.12928 -20.37532 -19.12263 -18.67378 -18.31584 -18.24137 -18.13488 -17.27234 -16.87067 -16.53902 -16.44621 -16.32182 -15.68237 -15.43229 -15.40322 -15.31236 -15.17675 -14.85105 -14.55026 -14.35018 -14.10846 -13.96164 -13.71908 -13.65394 -13.37135 -13.13681 -12.97416 -12.87756 -12.81084 -12.76898 -12.42205 -12.09345 -12.07740 -11.96401 -11.73732 -11.53382 -11.43682 -11.06077 -10.95307 -10.16738 -9.72766 -9.57607 -9.01281 -7.95693 -5.25367 -0.13136 -0.01862 1.45936 1.47378 1.55415 1.57462 1.87240 2.36189 2.55093 3.07704 3.17283 3.35646 3.38193 3.43469 3.58919 3.60311 3.80864 3.86417 3.97420 4.07842 4.19305 4.26466 4.31000 4.38782 4.42284 4.53698 4.57266 4.66561 4.73865 4.80744 4.87460 4.90329 4.90956 4.95769 4.98650 5.05930 5.07917 5.09297 5.22945 5.27060 5.37109 5.48842 5.56512 5.73827 6.25797 6.53964 7.08313 7.31492 8.07971 8.29459 9.28238 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014609 B = 0.002428 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.210499 B =11527.252334 C =12388.802709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.104 0.896 4 C 0.102 3.898 5 N -0.620 5.620 6 C 0.523 3.477 7 O -0.589 6.589 8 C -0.088 4.088 9 C -0.085 4.085 10 C -0.117 4.117 11 C 0.077 3.923 12 F -0.140 7.140 13 C -0.120 4.120 14 C -0.126 4.126 15 C 0.082 3.918 16 F -0.144 7.144 17 C 0.118 3.882 18 C -0.093 4.093 19 H 0.063 0.937 20 C 0.164 3.836 21 N -0.749 5.749 22 C -0.241 4.241 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.975 3.025 27 H -0.261 1.261 28 H -0.296 1.296 29 H -0.294 1.294 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.166 0.834 40 H 0.073 0.927 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.370 0.630 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 -2.194 28.622 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.122 0.878 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.313 3.687 7 O -0.469 6.469 8 C -0.127 4.127 9 C -0.086 4.086 10 C -0.135 4.135 11 C 0.057 3.943 12 F -0.118 7.118 13 C -0.139 4.139 14 C -0.145 4.145 15 C 0.063 3.937 16 F -0.123 7.123 17 C -0.005 4.005 18 C -0.113 4.113 19 H 0.081 0.919 20 C 0.038 3.962 21 N -0.391 5.391 22 C -0.373 4.373 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.804 3.196 27 H -0.186 1.186 28 H -0.223 1.223 29 H -0.221 1.221 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.047 0.953 44 H 0.201 0.799 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.861 -2.543 28.323 29.035 hybrid contribution 0.558 -0.411 -1.687 1.823 sum -5.304 -2.953 26.637 27.320 Atomic orbital electron populations 1.21828 0.92850 1.01848 1.03056 1.22107 0.97369 0.99974 0.91653 0.87773 1.22570 0.96533 0.86299 0.96560 1.48927 1.53496 1.15629 1.17211 1.20813 0.79617 0.79856 0.88381 1.90739 1.42748 1.44213 1.69189 1.20661 1.04634 0.95083 0.92344 1.19332 0.96391 0.94486 0.98408 1.21081 0.96634 0.97743 0.98057 1.17789 0.87719 0.94802 0.93959 1.91509 1.54879 1.96618 1.68816 1.21279 0.94972 0.99662 0.97954 1.21245 0.98433 0.96421 0.98401 1.17900 0.87655 0.95152 0.93042 1.91487 1.54706 1.96669 1.69447 1.22301 0.97296 0.98113 0.82838 1.22391 0.96178 0.97198 0.95529 0.91900 1.20812 0.96765 0.93173 0.85460 1.42667 1.79229 1.05697 1.11556 1.19704 1.34192 0.91858 0.91543 0.90137 1.25642 1.03669 0.96260 1.01718 1.69858 1.56346 1.06256 1.29937 0.85040 0.76892 0.78338 0.79300 1.18554 1.22311 1.22105 0.89396 0.92992 0.93368 0.88408 0.87667 0.83322 0.85327 0.81845 0.81153 0.81673 0.90927 0.94121 0.95112 0.95303 0.79865 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.89 71.98 0.64 -1.65 16 2 C -0.09 -1.77 3.17 -9.90 -0.03 -1.81 16 3 H 0.10 1.75 7.85 -2.39 -0.02 1.73 16 4 C 0.10 1.60 6.42 86.53 0.56 2.15 16 5 N -0.62 -16.14 3.29 -809.40 -2.66 -18.81 16 6 C 0.52 14.76 7.88 87.66 0.69 15.45 16 7 O -0.59 -23.27 16.16 -3.03 -0.05 -23.32 16 8 C -0.09 -1.49 4.64 29.10 0.13 -1.36 16 9 C -0.08 -1.71 4.42 -19.83 -0.09 -1.80 16 10 C -0.12 -2.07 9.65 22.31 0.22 -1.85 16 11 C 0.08 1.39 7.30 22.37 0.16 1.55 16 12 F -0.14 -2.64 17.27 44.97 0.78 -1.86 16 13 C -0.12 -1.88 10.02 22.31 0.22 -1.65 16 14 C -0.13 -2.22 10.02 22.31 0.22 -2.00 16 15 C 0.08 1.83 7.14 22.37 0.16 1.99 16 16 F -0.14 -3.74 16.66 44.97 0.75 -2.99 16 17 C 0.12 3.97 6.45 86.73 0.56 4.53 16 18 C -0.09 -2.89 2.62 -9.58 -0.03 -2.92 16 19 H 0.06 2.22 7.86 -2.39 -0.02 2.20 16 20 C 0.16 6.30 5.58 86.38 0.48 6.78 16 21 N -0.75 -38.80 5.52 -343.44 -1.90 -40.70 16 22 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 23 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 24 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 25 N -0.97 -61.97 13.06 21.65 0.28 -61.69 16 26 Si 0.98 47.09 29.55 68.60 2.03 49.11 16 27 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.11 1.05 7.08 -2.39 -0.02 1.03 16 35 H 0.15 1.31 8.00 -2.38 -0.02 1.29 16 36 H 0.13 1.68 7.71 -2.39 -0.02 1.66 16 37 H 0.16 2.11 8.04 -2.91 -0.02 2.09 16 38 H 0.17 1.67 8.06 -2.92 -0.02 1.65 16 39 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.07 2.43 7.94 -2.39 -0.02 2.42 16 41 H 0.04 1.74 7.85 -2.39 -0.02 1.72 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.03 1.08 7.99 -2.38 -0.02 1.06 16 44 H 0.37 21.02 7.67 -92.71 -0.71 20.31 16 45 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -79.67 383.47 4.74 -74.93 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.30 Total: 25.02 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.21 Total: 0.31 kcal Atomic # 7 Polarization: -116.92 SS G_CDS: -4.28 Total: -121.19 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 1.53 Total: -4.85 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -79.67 4.74 -74.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325553784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.592 kcal (2) G-P(sol) polarization free energy of solvation -79.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds