Wall clock time and date at job start Tue Mar 31 2020 20:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.99174 * 2 1 4 4 C 1.54318 * 109.88365 * 121.09038 * 2 1 3 5 5 H 1.08994 * 110.72133 * 23.07367 * 4 2 1 6 6 N 1.46901 * 110.72149 * 259.97561 * 4 2 1 7 7 C 1.46905 * 110.99870 * 155.00119 * 6 4 2 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 4 9 9 C 1.39870 * 126.03977 * 90.02620 * 8 7 6 10 10 N 1.30840 * 108.20524 * 179.97438 * 9 8 7 11 11 N 1.40088 * 108.20200 * 359.97438 * 10 9 8 12 12 C 1.46494 * 126.03314 * 180.02562 * 11 10 9 13 13 C 1.34948 * 107.92454 * 359.76060 * 11 10 9 14 14 C 1.55158 * 102.94002 * 141.61451 * 4 2 1 15 15 C 1.54904 * 101.58056 * 324.49848 * 14 4 2 16 16 N 1.47019 * 109.88582 * 238.90456 * 2 1 3 17 17 C 1.34777 * 125.64917 * 61.60046 * 16 2 1 18 18 O 1.21291 * 119.99819 * 359.97438 * 17 16 2 19 19 C 1.50694 * 120.00286 * 180.02562 * 17 16 2 20 20 S 1.80993 * 109.47577 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00435 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00101 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00434 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99590 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00184 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46933 * 60.00036 * 25 23 21 27 27 H 1.48498 * 109.46879 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46916 * 300.00118 * 25 23 21 29 29 H 1.09003 * 109.47587 * 298.90030 * 1 2 3 30 30 H 1.09002 * 109.47638 * 58.91162 * 1 2 3 31 31 H 1.09007 * 109.47001 * 178.90787 * 1 2 3 32 32 H 1.00901 * 111.00067 * 278.95294 * 6 4 2 33 33 H 1.09001 * 109.46798 * 300.00327 * 7 6 4 34 34 H 1.08998 * 109.46961 * 60.00043 * 7 6 4 35 35 H 1.08000 * 125.89807 * 359.97438 * 9 8 7 36 36 H 1.09001 * 109.47513 * 90.02815 * 12 11 10 37 37 H 1.09002 * 109.46735 * 210.02481 * 12 11 10 38 38 H 1.08996 * 109.47623 * 330.02368 * 12 11 10 39 39 H 1.08007 * 126.12544 * 180.24130 * 13 11 10 40 40 H 1.08997 * 111.00454 * 82.57341 * 14 4 2 41 41 H 1.09007 * 111.00421 * 206.42307 * 14 4 2 42 42 H 1.08999 * 110.36706 * 278.16849 * 15 14 4 43 43 H 1.09004 * 110.45835 * 155.89790 * 15 14 4 44 44 H 1.08999 * 109.47069 * 300.00050 * 19 17 16 45 45 H 1.09001 * 109.47535 * 59.99679 * 19 17 16 46 46 H 0.96999 * 119.99738 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 1 1.3040 -1.4435 1.6201 6 7 2.4565 0.1989 2.2903 7 6 2.3872 -0.4240 3.6190 8 6 2.8048 0.5768 4.6654 9 6 1.9590 1.4629 5.3405 10 7 2.6845 2.1694 6.1690 11 7 4.0168 1.7540 6.0475 12 6 5.1574 2.2870 6.7966 13 6 4.0631 0.7723 5.1228 14 6 3.2877 -1.5140 0.6924 15 6 2.8146 -1.8793 -0.7367 16 7 2.0301 -0.7140 -1.1839 17 6 1.8074 -0.3621 -2.4657 18 8 1.1427 0.6206 -2.7180 19 6 2.3833 -1.1900 -3.5854 20 16 1.9125 -0.4652 -5.1756 21 6 2.6966 -1.5991 -6.2729 22 1 3.2570 -2.4335 -5.8775 23 6 2.5931 -1.4209 -7.6455 24 7 1.9097 -0.4044 -8.1275 25 14 3.4238 -2.6235 -8.8088 26 1 2.8805 -3.9869 -8.5821 27 1 3.1644 -2.2138 -10.2124 28 1 4.8872 -2.6255 -8.5565 29 1 -0.3634 0.4967 0.8997 30 1 -0.3634 0.5306 -0.8800 31 1 -0.3633 -1.0276 -0.0196 32 1 3.3789 0.5664 2.1110 33 1 1.3654 -0.7492 3.8149 34 1 3.0550 -1.2848 3.6519 35 1 0.8914 1.5491 5.2019 36 1 5.2881 1.7151 7.7152 37 1 6.0591 2.2097 6.1891 38 1 4.9737 3.3328 7.0428 39 1 4.9468 0.2400 4.8029 40 1 4.1654 -0.8686 0.6604 41 1 3.4854 -2.4108 1.2797 42 1 2.1888 -2.7714 -0.7127 43 1 3.6706 -2.0348 -1.3933 44 1 3.4700 -1.2079 -3.5022 45 1 1.9973 -2.2073 -3.5208 46 1 1.8377 -0.2796 -9.0867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331857801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:47 Heat of formation + Delta-G solvation = 51.553394 kcal Electronic energy + Delta-G solvation = -26012.188719 eV Core-core repulsion = 22257.985989 eV Total energy + Delta-G solvation = -3754.202730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.53291 -40.06996 -37.74037 -35.43752 -33.52572 -32.41300 -31.84932 -31.27722 -30.02831 -28.45082 -27.52632 -25.49693 -25.46134 -23.82942 -22.76301 -21.49309 -21.10039 -20.52026 -18.86101 -17.65590 -17.30787 -16.77050 -16.26789 -15.83500 -15.43577 -14.91703 -14.83525 -14.78372 -14.60352 -14.35388 -13.87310 -13.82530 -13.61937 -13.26945 -13.08432 -13.02284 -12.77748 -12.67964 -12.57961 -12.45392 -12.15932 -11.83414 -11.64983 -11.55436 -11.20358 -11.03223 -11.02091 -10.93531 -10.77218 -10.71624 -9.80394 -9.77689 -9.28311 -9.04369 -8.89705 -8.56964 -8.41726 -8.20690 -6.47729 -6.19692 -3.90121 1.50990 2.15185 2.41696 2.94547 3.14251 3.24182 3.26703 3.30026 3.63328 3.98458 4.13600 4.22122 4.35038 4.39911 4.46583 4.66635 4.72949 4.76885 4.84938 4.93748 5.01107 5.10218 5.13288 5.15165 5.20118 5.41446 5.41938 5.44771 5.51709 5.52639 5.65469 5.68945 5.75771 5.79955 5.86225 5.94989 6.16061 6.16904 6.29472 6.40193 6.58788 6.60783 6.80390 7.08910 7.35057 7.60646 7.76520 8.36593 8.64914 9.25230 10.87663 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.001819 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.159258 B =15386.759373 C =15677.634733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.080 0.920 4 C 0.083 3.917 5 H 0.095 0.905 6 N -0.674 5.674 7 C 0.140 3.860 8 C -0.234 4.234 9 C 0.069 3.931 10 N -0.301 5.301 11 N -0.378 5.378 12 C 0.101 3.899 13 C 0.059 3.941 14 C -0.163 4.163 15 C 0.104 3.896 16 N -0.624 5.624 17 C 0.549 3.451 18 O -0.513 6.513 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.344 0.656 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.184 0.816 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.171 0.829 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.437 -2.275 30.660 31.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 H 0.098 0.902 4 C -0.028 4.028 5 H 0.113 0.887 6 N -0.305 5.305 7 C 0.011 3.989 8 C -0.246 4.246 9 C -0.118 4.118 10 N -0.122 5.122 11 N -0.160 5.160 12 C -0.040 4.040 13 C -0.088 4.088 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.362 5.362 17 C 0.338 3.662 18 O -0.387 6.387 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.201 0.799 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.188 0.812 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.873 0.608 31.063 31.449 hybrid contribution 2.281 -3.216 -1.104 4.094 sum 7.155 -2.607 29.960 30.913 Atomic orbital electron populations 1.22075 0.94594 1.01842 1.03038 1.21378 0.94662 0.96559 0.83178 0.90180 1.22689 0.96375 0.92570 0.91213 0.88710 1.60404 1.33690 1.35689 1.00692 1.20128 1.00995 0.92243 0.85545 1.19953 0.92434 1.06236 1.05966 1.23812 1.00345 0.93780 0.93836 1.77404 0.87156 1.23479 1.24200 1.48464 1.06906 1.28774 1.31813 1.21854 0.84932 1.01042 0.96174 1.22348 0.99545 0.93493 0.93431 1.23506 0.98829 1.01518 0.96465 1.22174 0.95678 0.89287 0.94867 1.48588 1.53924 1.28696 1.04993 1.19966 0.79875 0.85037 0.81371 1.90699 1.38489 1.26936 1.82527 1.23511 1.03550 1.02630 1.00060 1.85399 1.69611 1.37691 0.90588 1.22823 1.38331 1.14127 0.93135 0.91039 1.24986 0.95252 0.95983 0.97328 1.70009 1.38441 1.28093 1.13701 0.86234 0.79619 0.80564 0.79133 1.19951 1.20803 1.19974 0.91658 0.91010 0.93044 0.83711 0.90095 0.94641 0.79940 0.90816 0.89472 0.89235 0.81215 0.90436 0.90065 0.91419 0.90379 0.89487 0.89422 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.09 37.16 0.34 -1.70 16 2 C 0.15 1.84 3.21 -66.96 -0.22 1.62 16 3 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 4 C 0.08 0.70 2.81 -65.88 -0.18 0.51 16 5 H 0.09 0.75 7.53 -51.93 -0.39 0.36 16 6 N -0.67 -5.25 6.30 -106.06 -0.67 -5.92 16 7 C 0.14 0.90 6.03 -4.97 -0.03 0.87 16 8 C -0.23 -1.76 5.61 -105.06 -0.59 -2.35 16 9 C 0.07 0.61 11.96 -17.36 -0.21 0.40 16 10 N -0.30 -3.09 12.58 30.63 0.39 -2.70 16 11 N -0.38 -2.91 4.01 -68.17 -0.27 -3.18 16 12 C 0.10 0.38 11.47 59.84 0.69 1.07 16 13 C 0.06 0.39 11.40 -17.22 -0.20 0.19 16 14 C -0.16 -1.23 6.67 -24.58 -0.16 -1.40 16 15 C 0.10 1.09 6.69 -2.54 -0.02 1.07 16 16 N -0.62 -9.09 3.06 -163.03 -0.50 -9.59 16 17 C 0.55 10.76 7.66 -10.99 -0.08 10.68 16 18 O -0.51 -12.02 14.91 5.55 0.08 -11.93 16 19 C -0.15 -3.05 5.16 36.00 0.19 -2.87 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 22 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 25 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.17 6.90 -51.93 -0.36 0.81 16 31 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.34 2.63 8.20 -39.29 -0.32 2.31 16 33 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.17 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.08 0.58 7.77 -51.93 -0.40 0.18 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16 44 H 0.09 1.68 7.85 -51.92 -0.41 1.27 16 45 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -36.81 395.63 -9.10 -45.91 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.30 Total: -0.61 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.28 Total: -4.95 kcal Atomic # 7 Polarization: -46.63 SS G_CDS: -0.32 Total: -46.95 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.81 -9.10 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331857801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.463 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds