Wall clock time and date at job start Tue Mar 31 2020 20:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.99174 * 2 1 4 4 C 1.54318 * 109.88365 * 121.09038 * 2 1 3 5 5 H 1.08994 * 110.72133 * 23.07367 * 4 2 1 6 6 N 1.46901 * 110.72149 * 259.97561 * 4 2 1 7 7 C 1.46905 * 110.99870 * 155.00119 * 6 4 2 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 4 9 9 C 1.39870 * 126.03977 * 90.02620 * 8 7 6 10 10 N 1.30840 * 108.20524 * 179.97438 * 9 8 7 11 11 N 1.40088 * 108.20200 * 359.97438 * 10 9 8 12 12 C 1.46494 * 126.03314 * 180.02562 * 11 10 9 13 13 C 1.34948 * 107.92454 * 359.76060 * 11 10 9 14 14 C 1.55158 * 102.94002 * 141.61451 * 4 2 1 15 15 C 1.54904 * 101.58056 * 324.49848 * 14 4 2 16 16 N 1.47019 * 109.88582 * 238.90456 * 2 1 3 17 17 C 1.34777 * 125.64917 * 61.60046 * 16 2 1 18 18 O 1.21291 * 119.99819 * 359.97438 * 17 16 2 19 19 C 1.50694 * 120.00286 * 180.02562 * 17 16 2 20 20 S 1.80993 * 109.47577 * 180.02562 * 19 17 16 21 21 C 1.76195 * 100.00435 * 179.97438 * 20 19 17 22 22 H 1.08007 * 120.00101 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00434 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99590 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00184 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46933 * 60.00036 * 25 23 21 27 27 H 1.48498 * 109.46879 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46916 * 300.00118 * 25 23 21 29 29 H 1.09003 * 109.47587 * 298.90030 * 1 2 3 30 30 H 1.09002 * 109.47638 * 58.91162 * 1 2 3 31 31 H 1.09007 * 109.47001 * 178.90787 * 1 2 3 32 32 H 1.00901 * 111.00067 * 278.95294 * 6 4 2 33 33 H 1.09001 * 109.46798 * 300.00327 * 7 6 4 34 34 H 1.08998 * 109.46961 * 60.00043 * 7 6 4 35 35 H 1.08000 * 125.89807 * 359.97438 * 9 8 7 36 36 H 1.09001 * 109.47513 * 90.02815 * 12 11 10 37 37 H 1.09002 * 109.46735 * 210.02481 * 12 11 10 38 38 H 1.08996 * 109.47623 * 330.02368 * 12 11 10 39 39 H 1.08007 * 126.12544 * 180.24130 * 13 11 10 40 40 H 1.08997 * 111.00454 * 82.57341 * 14 4 2 41 41 H 1.09007 * 111.00421 * 206.42307 * 14 4 2 42 42 H 1.08999 * 110.36706 * 278.16849 * 15 14 4 43 43 H 1.09004 * 110.45835 * 155.89790 * 15 14 4 44 44 H 1.08999 * 109.47069 * 300.00050 * 19 17 16 45 45 H 1.09001 * 109.47535 * 59.99679 * 19 17 16 46 46 H 0.96999 * 119.99738 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2427 5 1 1.3040 -1.4435 1.6201 6 7 2.4565 0.1989 2.2903 7 6 2.3872 -0.4240 3.6190 8 6 2.8048 0.5768 4.6654 9 6 1.9590 1.4629 5.3405 10 7 2.6845 2.1694 6.1690 11 7 4.0168 1.7540 6.0475 12 6 5.1574 2.2870 6.7966 13 6 4.0631 0.7723 5.1228 14 6 3.2877 -1.5140 0.6924 15 6 2.8146 -1.8793 -0.7367 16 7 2.0301 -0.7140 -1.1839 17 6 1.8074 -0.3621 -2.4657 18 8 1.1427 0.6206 -2.7180 19 6 2.3833 -1.1900 -3.5854 20 16 1.9125 -0.4652 -5.1756 21 6 2.6966 -1.5991 -6.2729 22 1 3.2570 -2.4335 -5.8775 23 6 2.5931 -1.4209 -7.6455 24 7 1.9097 -0.4044 -8.1275 25 14 3.4238 -2.6235 -8.8088 26 1 2.8805 -3.9869 -8.5821 27 1 3.1644 -2.2138 -10.2124 28 1 4.8872 -2.6255 -8.5565 29 1 -0.3634 0.4967 0.8997 30 1 -0.3634 0.5306 -0.8800 31 1 -0.3633 -1.0276 -0.0196 32 1 3.3789 0.5664 2.1110 33 1 1.3654 -0.7492 3.8149 34 1 3.0550 -1.2848 3.6519 35 1 0.8914 1.5491 5.2019 36 1 5.2881 1.7151 7.7152 37 1 6.0591 2.2097 6.1891 38 1 4.9737 3.3328 7.0428 39 1 4.9468 0.2400 4.8029 40 1 4.1654 -0.8686 0.6604 41 1 3.4854 -2.4108 1.2797 42 1 2.1888 -2.7714 -0.7127 43 1 3.6706 -2.0348 -1.3933 44 1 3.4700 -1.2079 -3.5022 45 1 1.9973 -2.2073 -3.5208 46 1 1.8377 -0.2796 -9.0867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331857801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:45 Heat of formation + Delta-G solvation = 25.110195 kcal Electronic energy + Delta-G solvation = -26013.335382 eV Core-core repulsion = 22257.985989 eV Total energy + Delta-G solvation = -3755.349393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05418 -41.21777 -38.94291 -36.24431 -34.58391 -34.07122 -32.89649 -32.09984 -30.96029 -29.67983 -28.07560 -27.64476 -26.21604 -24.47932 -23.81836 -22.08328 -21.81737 -21.09558 -20.29684 -19.42827 -18.06189 -17.85902 -17.32318 -16.87768 -16.52600 -16.38839 -15.97432 -15.87315 -15.51861 -15.19188 -15.15972 -14.58538 -14.56011 -14.42734 -14.01444 -13.80328 -13.69605 -13.58063 -13.44454 -13.21981 -13.16177 -13.12439 -12.87654 -12.83889 -12.65454 -12.48645 -12.34355 -11.97955 -11.76584 -11.64445 -11.45384 -11.12498 -10.84031 -10.32939 -10.27578 -9.65719 -9.41973 -9.10794 -8.67608 -8.33938 -6.12890 1.01103 1.24742 1.44395 1.45412 1.55420 1.61822 1.75095 1.84572 2.12983 2.28125 2.99902 3.25453 3.34369 3.57014 3.64217 3.77758 3.98075 4.04416 4.12040 4.24072 4.28951 4.35559 4.37663 4.42591 4.44209 4.45634 4.46602 4.62060 4.68196 4.71372 4.77601 4.81740 4.94901 4.97007 5.05091 5.12120 5.18601 5.26635 5.32006 5.41338 5.52015 5.74817 6.16590 6.19765 6.22884 6.46879 6.52988 6.80120 7.06679 7.18740 8.75120 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027121 B = 0.001819 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.159258 B =15386.759373 C =15677.634733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 H 0.057 0.943 4 C 0.099 3.901 5 H 0.111 0.889 6 N -0.684 5.684 7 C 0.148 3.852 8 C -0.247 4.247 9 C 0.052 3.948 10 N -0.347 5.347 11 N -0.384 5.384 12 C 0.093 3.907 13 C 0.065 3.935 14 C -0.148 4.148 15 C 0.090 3.910 16 N -0.614 5.614 17 C 0.545 3.455 18 O -0.565 6.565 19 C -0.119 4.119 20 S -0.152 6.152 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.261 1.261 29 H 0.082 0.918 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.346 0.654 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.189 0.811 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.205 0.795 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.895 -5.354 32.459 34.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.036 3.964 3 H 0.075 0.925 4 C -0.012 4.012 5 H 0.129 0.871 6 N -0.315 5.315 7 C 0.019 3.981 8 C -0.259 4.259 9 C -0.133 4.133 10 N -0.169 5.169 11 N -0.166 5.166 12 C -0.047 4.047 13 C -0.083 4.083 14 C -0.187 4.187 15 C -0.032 4.032 16 N -0.349 5.349 17 C 0.333 3.667 18 O -0.444 6.444 19 C -0.270 4.270 20 S 0.075 5.925 21 C -0.695 4.695 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.186 1.186 27 H -0.204 1.204 28 H -0.186 1.186 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.205 0.795 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.222 0.778 40 H 0.099 0.901 41 H 0.134 0.866 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.355 -2.497 32.939 33.843 hybrid contribution 1.536 -2.217 -1.485 3.078 sum 8.891 -4.713 31.454 33.025 Atomic orbital electron populations 1.21999 0.95087 1.01976 1.01856 1.21579 0.94377 0.96094 0.84345 0.92505 1.22494 0.97185 0.92091 0.89428 0.87148 1.60299 1.34032 1.35983 1.01185 1.20104 1.01608 0.92304 0.84053 1.20139 0.92653 1.06604 1.06533 1.24091 1.00996 0.94162 0.94061 1.77327 0.88817 1.25070 1.25678 1.48799 1.06726 1.28925 1.32151 1.22144 0.84675 1.00864 0.97045 1.22919 1.00396 0.92701 0.92263 1.23492 0.98096 1.02772 0.94351 1.22596 0.95629 0.88156 0.96834 1.48532 1.52991 1.29649 1.03758 1.19757 0.79708 0.84393 0.82886 1.90681 1.40960 1.29071 1.83642 1.23301 1.04548 1.02815 0.96318 1.85613 1.70874 1.40138 0.95883 1.23163 1.38386 1.14234 0.93676 0.89877 1.26153 0.95736 0.97967 0.99314 1.70186 1.40086 1.30335 1.14173 0.84990 0.78780 0.77925 0.76211 1.18565 1.20404 1.18570 0.89923 0.95189 0.92032 0.83501 0.90014 0.92469 0.79452 0.89610 0.86831 0.89771 0.77835 0.90077 0.86577 0.89645 0.90066 0.87701 0.87666 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.09 71.98 0.65 -3.25 16 2 C 0.14 3.38 3.21 45.34 0.15 3.53 16 3 H 0.06 1.65 8.03 -2.39 -0.02 1.64 16 4 C 0.10 1.36 2.81 46.10 0.13 1.49 16 5 H 0.11 1.25 7.53 -2.39 -0.02 1.24 16 6 N -0.68 -8.72 6.30 -489.45 -3.08 -11.81 16 7 C 0.15 1.39 6.03 85.55 0.52 1.91 16 8 C -0.25 -3.20 5.61 -20.15 -0.11 -3.31 16 9 C 0.05 0.91 11.96 85.24 1.02 1.93 16 10 N -0.35 -7.03 12.58 -57.02 -0.72 -7.75 16 11 N -0.38 -5.32 4.01 -369.58 -1.48 -6.80 16 12 C 0.09 0.53 11.47 127.77 1.47 2.00 16 13 C 0.06 0.68 11.40 83.54 0.95 1.63 16 14 C -0.15 -1.56 6.67 31.98 0.21 -1.35 16 15 C 0.09 1.59 6.69 86.85 0.58 2.17 16 16 N -0.61 -17.23 3.06 -788.09 -2.42 -19.64 16 17 C 0.54 21.67 7.66 87.66 0.67 22.34 16 18 O -0.56 -27.92 14.91 -3.06 -0.05 -27.97 16 19 C -0.12 -4.92 5.16 71.23 0.37 -4.55 16 20 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 21 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.75 5.49 84.86 0.47 1.21 16 24 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 25 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 26 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.03 1.02 6.90 -2.39 -0.02 1.00 16 31 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.35 4.28 8.20 -89.69 -0.74 3.55 16 33 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 34 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 39 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.08 0.86 7.77 -2.39 -0.02 0.85 16 41 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.42 7.47 -2.39 -0.02 1.41 16 44 H 0.10 3.94 7.85 -2.40 -0.02 3.92 16 45 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 46 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -85.52 395.63 1.37 -84.15 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.24 Total: 15.48 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 7.72 Total: -5.19 kcal Atomic # 7 Polarization: -94.91 SS G_CDS: -7.41 Total: -102.32 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.05 Total: -27.97 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -85.52 1.37 -84.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331857801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.261 kcal (2) G-P(sol) polarization free energy of solvation -85.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds