Wall clock time and date at job start Tue Mar 31 2020 20:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54328 * 109.88457 * 238.98761 * 2 1 3 5 5 H 1.09006 * 110.71536 * 336.74991 * 4 2 1 6 6 N 1.46899 * 110.72191 * 100.02319 * 4 2 1 7 7 C 1.46897 * 111.00076 * 205.00323 * 6 4 2 8 8 C 1.52997 * 109.47243 * 180.02562 * 7 6 4 9 9 N 1.46506 * 109.47060 * 179.97438 * 8 7 6 10 10 C 1.34942 * 126.03462 * 124.71562 * 9 8 7 11 11 C 1.35319 * 107.74703 * 179.84092 * 10 9 8 12 12 C 1.39873 * 107.91457 * 0.42202 * 11 10 9 13 13 N 1.30831 * 108.20764 * 359.73889 * 12 11 10 14 14 C 1.55403 * 102.82774 * 218.48319 * 4 2 1 15 15 C 1.54903 * 101.66790 * 35.33394 * 14 4 2 16 16 N 1.47022 * 109.88675 * 121.01761 * 2 1 3 17 17 C 1.34778 * 125.64817 * 298.32564 * 16 2 1 18 18 O 1.21283 * 119.99580 * 359.97438 * 17 16 2 19 19 C 1.50693 * 120.00059 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.46932 * 179.97438 * 19 17 16 21 21 C 1.76207 * 99.99996 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99271 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99940 * 179.97438 * 21 20 19 24 24 N 1.31632 * 120.00156 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99856 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47192 * 59.99818 * 25 23 21 27 27 H 1.48494 * 109.47305 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46941 * 300.00140 * 25 23 21 29 29 H 1.09002 * 109.47153 * 300.69831 * 1 2 3 30 30 H 1.09001 * 109.46832 * 180.70022 * 1 2 3 31 31 H 1.09004 * 109.47261 * 60.70003 * 1 2 3 32 32 H 1.00903 * 110.99997 * 81.04925 * 6 4 2 33 33 H 1.09008 * 109.47130 * 300.00379 * 7 6 4 34 34 H 1.08997 * 109.47522 * 59.99750 * 7 6 4 35 35 H 1.08998 * 109.47181 * 299.99650 * 8 7 6 36 36 H 1.08997 * 109.47291 * 59.99967 * 8 7 6 37 37 H 1.08008 * 126.12997 * 359.97438 * 10 9 8 38 38 H 1.08001 * 126.04511 * 180.16580 * 11 10 9 39 39 H 1.07999 * 125.89705 * 179.72020 * 12 11 10 40 40 H 1.08998 * 110.88682 * 277.25916 * 14 4 2 41 41 H 1.09002 * 111.06681 * 153.49006 * 14 4 2 42 42 H 1.09002 * 110.36788 * 204.23581 * 15 14 4 43 43 H 1.09000 * 110.46282 * 81.96139 * 15 14 4 44 44 H 1.09001 * 109.47183 * 299.99774 * 19 17 16 45 45 H 1.08997 * 109.46978 * 59.99800 * 19 17 16 46 46 H 0.96996 * 119.99579 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 -1.2438 5 1 1.3051 -1.4437 -1.6203 6 7 2.4566 0.2019 -2.2901 7 6 2.3871 -0.4191 -3.6196 8 6 2.8123 0.5981 -4.6804 9 7 2.7436 -0.0215 -6.0063 10 6 2.0485 0.4440 -7.0650 11 6 2.2472 -0.4092 -8.0964 12 6 3.0849 -1.4365 -7.6497 13 7 3.3831 -1.2051 -6.3970 14 6 3.2876 -1.5152 -0.6903 15 6 2.8146 -1.8784 0.7393 16 7 2.0301 -0.7124 1.1849 17 6 1.8086 -0.3579 2.4662 18 8 1.1459 0.6263 2.7171 19 6 2.3844 -1.1845 3.5869 20 16 1.9153 -0.4562 5.1762 21 6 2.6989 -1.5890 6.2751 22 1 3.2581 -2.4245 5.8807 23 6 2.5973 -1.4075 7.6474 24 7 1.9152 -0.3894 8.1280 25 14 3.4274 -2.6088 8.8124 26 1 4.8905 -2.6138 8.5584 27 1 3.1694 -2.1963 10.2153 28 1 2.8817 -3.9718 8.5893 29 1 -0.3633 0.5246 0.8837 30 1 -0.3633 -1.0276 0.0126 31 1 -0.3634 0.5029 -0.8962 32 1 3.3790 0.5692 -2.1103 33 1 3.0549 -1.2800 -3.6538 34 1 1.3654 -0.7440 -3.8160 35 1 2.1448 1.4591 -4.6464 36 1 3.8341 0.9225 -4.4839 37 1 1.4438 1.3387 -7.0863 38 1 1.8291 -0.3161 -9.0878 39 1 3.4263 -2.2758 -8.2373 40 1 4.1654 -0.8697 -0.6593 41 1 3.4859 -2.4127 -1.2762 42 1 3.6717 -2.0319 1.3950 43 1 2.1892 -2.7708 0.7185 44 1 1.9971 -2.2014 3.5244 45 1 3.4710 -1.2036 3.5031 46 1 1.8440 -0.2628 9.0870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331858973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:14 Heat of formation + Delta-G solvation = 51.425701 kcal Electronic energy + Delta-G solvation = -25878.050589 eV Core-core repulsion = 22123.842322 eV Total energy + Delta-G solvation = -3754.208267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50079 -40.17386 -37.92732 -35.99600 -33.51142 -32.43014 -31.71736 -30.96092 -30.38503 -28.78431 -27.71392 -25.48442 -25.06789 -23.22777 -22.81214 -21.48921 -21.37375 -20.75746 -18.92888 -17.77122 -17.60783 -16.77740 -16.49186 -15.99848 -15.75746 -15.05401 -14.88912 -14.80224 -14.48819 -14.22669 -13.97298 -13.89844 -13.86785 -13.48839 -13.20685 -12.88701 -12.74736 -12.68270 -12.54449 -12.45899 -12.20342 -11.88070 -11.72543 -11.62509 -11.20978 -11.04623 -11.04079 -11.02797 -10.88424 -10.76511 -9.84340 -9.82123 -9.34546 -9.06006 -9.01042 -8.90602 -8.49733 -8.23593 -6.50113 -6.21525 -3.92260 1.49344 2.03577 2.46831 2.86642 3.08657 3.23188 3.24784 3.28699 3.53834 3.70042 4.10648 4.20367 4.23005 4.34511 4.39908 4.45314 4.63487 4.69821 4.78159 4.95663 5.03006 5.06475 5.12611 5.13451 5.25320 5.33667 5.35648 5.38332 5.45070 5.47918 5.56731 5.61718 5.63274 5.72621 5.76311 5.90859 6.03803 6.13505 6.24386 6.30569 6.43463 6.56078 6.61595 6.83953 7.30106 7.58987 7.69632 8.34879 8.58909 9.23526 10.85832 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034864 B = 0.001714 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.928246 B =16331.449153 C =16885.326823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 H 0.081 0.919 4 C 0.085 3.915 5 H 0.095 0.905 6 N -0.676 5.676 7 C 0.051 3.949 8 C 0.134 3.866 9 N -0.371 5.371 10 C 0.056 3.944 11 C -0.277 4.277 12 C 0.043 3.957 13 N -0.297 5.297 14 C -0.163 4.163 15 C 0.104 3.896 16 N -0.624 5.624 17 C 0.550 3.450 18 O -0.512 6.512 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.347 0.653 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.174 0.826 38 H 0.147 0.853 39 H 0.182 0.818 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 -1.238 -31.693 31.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.099 0.901 4 C -0.026 4.026 5 H 0.113 0.887 6 N -0.307 5.307 7 C -0.079 4.079 8 C 0.013 3.987 9 N -0.154 5.154 10 C -0.090 4.090 11 C -0.307 4.307 12 C -0.143 4.143 13 N -0.119 5.119 14 C -0.203 4.203 15 C -0.020 4.020 16 N -0.362 5.362 17 C 0.338 3.662 18 O -0.386 6.386 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.191 0.809 38 H 0.165 0.835 39 H 0.199 0.801 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.952 0.323 -29.941 29.958 hybrid contribution 1.660 -2.289 -0.306 2.844 sum 2.612 -1.966 -30.247 30.423 Atomic orbital electron populations 1.22086 0.94539 1.01928 1.03068 1.21345 0.94682 0.96560 0.83137 0.90053 1.22702 0.96632 0.92379 0.90876 0.88693 1.60273 1.33743 1.36064 1.00633 1.22149 1.02284 0.95713 0.87790 1.21650 1.03662 0.95560 0.77862 1.48676 1.37326 1.19204 1.10171 1.22628 0.97982 1.00617 0.87787 1.21543 1.09341 0.98710 1.01076 1.23919 0.97961 0.99781 0.92609 1.77360 1.19678 1.00096 1.14717 1.23540 0.98593 1.01640 0.96535 1.22180 0.95766 0.89273 0.94762 1.48585 1.53986 1.28691 1.04952 1.19981 0.79815 0.85036 0.81325 1.90697 1.38548 1.26813 1.82543 1.23516 1.03589 1.02657 1.00021 1.85391 1.69712 1.37602 0.90567 1.22823 1.38437 1.14072 0.93129 0.91018 1.24983 0.95231 0.95969 0.97327 1.70009 1.38465 1.28010 1.13767 0.86230 0.79630 0.80547 0.79125 1.19951 1.20784 1.19949 0.90827 0.92997 0.91772 0.83359 0.93286 0.90310 0.87530 0.89733 0.80875 0.83544 0.80100 0.90260 0.89934 0.90186 0.91333 0.89390 0.89423 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.10 37.16 0.34 -1.64 16 2 C 0.15 1.78 3.20 -66.95 -0.21 1.56 16 3 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 4 C 0.08 0.71 2.81 -65.74 -0.19 0.53 16 5 H 0.09 0.79 7.54 -51.93 -0.39 0.40 16 6 N -0.68 -4.64 6.31 -104.65 -0.66 -5.31 16 7 C 0.05 0.32 5.74 -3.83 -0.02 0.30 16 8 C 0.13 0.74 6.77 -4.04 -0.03 0.71 16 9 N -0.37 -2.80 3.68 -61.36 -0.23 -3.02 16 10 C 0.06 0.35 11.45 -17.22 -0.20 0.15 16 11 C -0.28 -1.78 10.80 -40.01 -0.43 -2.21 16 12 C 0.04 0.33 12.02 -17.37 -0.21 0.12 16 13 N -0.30 -2.80 12.42 30.62 0.38 -2.42 16 14 C -0.16 -1.29 6.68 -24.45 -0.16 -1.45 16 15 C 0.10 1.10 6.69 -2.53 -0.02 1.09 16 16 N -0.62 -8.94 3.06 -163.02 -0.50 -9.44 16 17 C 0.55 10.62 7.66 -10.99 -0.08 10.54 16 18 O -0.51 -11.80 14.91 5.56 0.08 -11.71 16 19 C -0.15 -3.04 5.16 36.00 0.19 -2.85 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 25 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.07 1.16 6.89 -51.93 -0.36 0.80 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.35 2.13 8.21 -39.29 -0.32 1.80 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.08 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.11 0.42 8.07 -51.93 -0.42 0.01 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.17 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.18 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.08 0.61 7.77 -51.93 -0.40 0.20 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.84 7.48 -51.93 -0.39 0.46 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 45 H 0.09 1.68 7.84 -51.92 -0.41 1.27 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 395.35 15.07 5.96 5.96 Total: -1.00 -35.90 395.35 -9.60 -45.50 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.30 Total: -0.46 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -0.83 Total: -6.19 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.27 Total: -45.67 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.90 -9.60 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331858973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.924 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds